RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ZNF561-AS1K7EIQ3 104 aa6.7□□□□□ -1.34
SYNE1-230ENST00000495090 HRCT1Q6UXD1 115 aa6.7□□□□□ -1.34
SYNE1-230ENST00000495090 LINC00482Q8N8I6 264 aa6.7□□□□□ -1.34
SYNE1-230ENST00000495090 WFDC9Q8NEX5 89 aa6.7□□□□□ -1.34
SYNE1-230ENST00000495090 PDE6GP18545 87 aa6.69□□□□□ -1.34
SYNE1-230ENST00000495090 KHDC1LQ5JSQ8 128 aa6.69□□□□□ -1.34
SYNE1-230ENST00000495090 LINC00575Q6W349 94 aa6.69□□□□□ -1.34
SYNE1-230ENST00000495090 C6orf223Q8N319 242 aa6.69□□□□□ -1.34
SYNE1-230ENST00000495090 MUC7Q8TAX7 377 aa6.69□□□□□ -1.34
SYNE1-230ENST00000495090 CSPG4Q6UVK1 2322 aa6.68□□□□□ -1.34
SYNE1-230ENST00000495090 IGHV4-28A0A0C4DH34 117 aa6.68□□□□□ -1.34
SYNE1-230ENST00000495090 RBM3P98179 157 aaKnown RBP6.68□□□□□ -1.34
SYNE1-230ENST00000495090 CXCL6P80162 114 aa6.68□□□□□ -1.34
SYNE1-230ENST00000495090 V9GYY9 64 aa6.68□□□□□ -1.34
SYNE1-230ENST00000495090 COL12A1Q99715 3063 aa6.67□□□□□ -1.34
SYNE1-230ENST00000495090 C9orf66Q5T8R8 295 aa6.67□□□□□ -1.34
SYNE1-230ENST00000495090 VPS13CQ709C8 3753 aa6.67□□□□□ -1.34
SYNE1-230ENST00000495090 LINC01547P58512 204 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-230ENST00000495090 KIAA0087Q14695 138 aa6.66□□□□□ -1.34
SYNE1-230ENST00000495090 C6orf99Q4VX62 202 aa6.66□□□□□ -1.34
SYNE1-230ENST00000495090 CSNK1G2-AS1Q8NCQ2 148 aa6.66□□□□□ -1.34
SYNE1-230ENST00000495090 C11orf68Q9H3H3 251 aaKnown RBP6.66□□□□□ -1.34
SYNE1-230ENST00000495090 NDUFC1O43677 76 aa6.66□□□□□ -1.34
SYNE1-230ENST00000495090 IGHV4-31P0DP07 118 aa6.66□□□□□ -1.34
SYNE1-230ENST00000495090 IGF2RP11717 2491 aa6.65□□□□□ -1.34
SYNE1-230ENST00000495090 ATP5EP56381 51 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-230ENST00000495090 Q6ZVQ6 151 aa6.65□□□□□ -1.34
SYNE1-230ENST00000495090 C1orf43Q9BWL3 253 aa6.65□□□□□ -1.34
SYNE1-230ENST00000495090 PRR3P79522 188 aaKnown RBP6.64□□□□□ -1.35
SYNE1-230ENST00000495090 CD164L2Q6UWJ8 174 aa6.64□□□□□ -1.35
SYNE1-230ENST00000495090 LINC00612Q8N6U2 182 aa6.64□□□□□ -1.35
SYNE1-230ENST00000495090 CRYBG3Q68DQ2 2970 aa6.64□□□□□ -1.35
SYNE1-230ENST00000495090 CCL24O00175 119 aa6.64□□□□□ -1.35
SYNE1-230ENST00000495090 SMIM26A0A096LP01 95 aa6.63□□□□□ -1.35
SYNE1-230ENST00000495090 C19orf73Q9NVV2 129 aa6.63□□□□□ -1.35
SYNE1-230ENST00000495090 PRO0628Q9UI54 55 aa6.63□□□□□ -1.35
SYNE1-230ENST00000495090 C4orf48Q5BLP8 95 aa6.62□□□□□ -1.35
SYNE1-230ENST00000495090 LAMTOR3Q9UHA4 124 aa6.62□□□□□ -1.35
SYNE1-230ENST00000495090 PLA2G2AP14555 144 aa6.62□□□□□ -1.35
SYNE1-230ENST00000495090 MAPK1IP1LQ8NDC0 245 aa6.62□□□□□ -1.35
SYNE1-230ENST00000495090 LOC100996750A0A140TA64 210 aa6.61□□□□□ -1.35
SYNE1-230ENST00000495090 IGLV6-57P01721 117 aa6.61□□□□□ -1.35
SYNE1-230ENST00000495090 RNASE1P07998 156 aaKnown RBP6.61□□□□□ -1.35
SYNE1-230ENST00000495090 GYPEP15421 78 aa6.61□□□□□ -1.35
SYNE1-230ENST00000495090 KRTAP4-6Q9BYQ5 205 aa6.61□□□□□ -1.35
SYNE1-230ENST00000495090 TRAV10A0A0B4J240 114 aa6.6□□□□□ -1.35
SYNE1-230ENST00000495090 ERC2-IT1O76042 136 aa6.6□□□□□ -1.35
SYNE1-230ENST00000495090 RPL35AP18077 110 aaKnown RBP6.6□□□□□ -1.35
SYNE1-230ENST00000495090 HAMPP81172 84 aa6.6□□□□□ -1.35
SYNE1-230ENST00000495090 Q8NDZ9 215 aa6.6□□□□□ -1.35
SYNE1-230ENST00000495090 TRBV7-4A0A0J9YYF1 115 aa6.6□□□□□ -1.35
SYNE1-230ENST00000495090 F8WEM9 126 aa6.59□□□□□ -1.35
SYNE1-230ENST00000495090 M0R2N4 97 aa6.59□□□□□ -1.35
SYNE1-230ENST00000495090 IGLV1-51P01701 117 aa6.59□□□□□ -1.35
SYNE1-230ENST00000495090 CHCHD10Q8WYQ3 142 aaPredicted RBP6.59□□□□□ -1.35
SYNE1-230ENST00000495090 C16orf95Q9H693 158 aa6.59□□□□□ -1.35
SYNE1-230ENST00000495090 PRO0255Q9UI72 69 aa6.59□□□□□ -1.35
SYNE1-230ENST00000495090 A0A0J9YWU9 116 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 IGHV4-30-4P0DP06 118 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-230ENST00000495090 Q8N3U1 123 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 RMI2Q96E14 147 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 PIEZO1Q92508 2521 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 CLPSL2Q6UWE3 100 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 Q6ZQY7 126 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 LINC00336Q6ZUF6 198 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 FP248Q71RG6 208 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-230ENST00000495090 ZNF843Q8N446 348 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 WFDC10AQ9H1F0 79 aa6.58□□□□□ -1.36
SYNE1-230ENST00000495090 TRBV7-6A0A0J9YX20 115 aa6.57□□□□□ -1.36
SYNE1-230ENST00000495090 C9orf116Q5BN46 136 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-230ENST00000495090 LINC00269Q8N2A0 174 aa6.57□□□□□ -1.36
SYNE1-230ENST00000495090 SPATA3Q8NHX4 192 aa6.57□□□□□ -1.36
SYNE1-230ENST00000495090 SNURFQ9Y675 71 aa6.57□□□□□ -1.36
SYNE1-230ENST00000495090 CELSR2Q9HCU4 2923 aa6.57□□□□□ -1.36
SYNE1-230ENST00000495090 C2CD3Q4AC94 2353 aa6.57□□□□□ -1.36
SYNE1-230ENST00000495090 SPG11Q96JI7 2443 aa6.56□□□□□ -1.36
SYNE1-230ENST00000495090 CR1P17927 2039 aa6.56□□□□□ -1.36
SYNE1-230ENST00000495090 GVQW2A0A096LPI5 108 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-230ENST00000495090 DEFB130BP0DP73 79 aa6.56□□□□□ -1.36
SYNE1-230ENST00000495090 DEFB130AP0DP74 79 aa6.56□□□□□ -1.36
SYNE1-230ENST00000495090 MIFP14174 115 aa6.56□□□□□ -1.36
SYNE1-230ENST00000495090 REG3AQ06141 175 aa6.56□□□□□ -1.36
SYNE1-230ENST00000495090 DIRC1Q969H9 104 aa6.56□□□□□ -1.36
SYNE1-230ENST00000495090 TM2D3Q9BRN9 247 aa6.55□□□□□ -1.36
SYNE1-230ENST00000495090 DOPEY1Q5JWR5 2465 aa6.54□□□□□ -1.36
SYNE1-230ENST00000495090 NREPQ16612 68 aa6.54□□□□□ -1.36
SYNE1-230ENST00000495090 NOTCH3Q9UM47 2321 aa6.54□□□□□ -1.36
SYNE1-230ENST00000495090 DNAJC9-AS1A6NH13 148 aa6.54□□□□□ -1.36
SYNE1-230ENST00000495090 ANGP03950 147 aaKnown RBP6.54□□□□□ -1.36
SYNE1-230ENST00000495090 SPAG11BQ08648 103 aa6.54□□□□□ -1.36
SYNE1-230ENST00000495090 LINC01006Q8NI28 216 aa6.54□□□□□ -1.36
SYNE1-230ENST00000495090 BBC3Q96PG8 261 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-230ENST00000495090 SPTBN4Q9H254 2564 aa6.54□□□□□ -1.36
SYNE1-230ENST00000495090 COX7BP24311 80 aa6.53□□□□□ -1.36
SYNE1-230ENST00000495090 ELOF1P60002 83 aaKnown RBP6.53□□□□□ -1.36
SYNE1-230ENST00000495090 TMEM254Q8TBM7 123 aa6.53□□□□□ -1.36
SYNE1-230ENST00000495090 MXRA5Q9NR99 2828 aa6.53□□□□□ -1.36
SYNE1-230ENST00000495090 LYRM9A8MSI8 78 aa6.52□□□□□ -1.37
SYNE1-230ENST00000495090 BPY2O14599 106 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms