RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF580Q9UK33 172 aa7.82□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 CRYGDP07320 174 aa7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 RPS28P62857 69 aaKnown RBP7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 LOC100131303A0A0U1RQF7 123 aa7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 COX8CQ7Z4L0 72 aa7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 TRBV27A0A0K0K1C4 114 aa7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 LINC01546A6NGU7 62 aa7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 OXLD1Q5BKU9 147 aa7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 ENHOQ6UWT2 76 aa7.81□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 DPH3Q96FX2 82 aa7.8□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 KLLNB2CW77 178 aa7.8□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 CRYGAP11844 174 aa7.8□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.8□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 NCR3O14931 201 aa7.8□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 UPK3BQ9BT76 320 aa7.79□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 DAD1P61803 113 aa7.79□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 ADAMTSL4-AS1Q5T5F5 129 aa7.79□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 C5orf38Q86SI9 138 aa7.79□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 POM121L12Q8N7R1 296 aa7.79□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 PIK3CD-AS1Q5SR53 167 aa7.79□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 MIR7-3HGQ8N6C7 128 aa7.79□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 SLPIP03973 132 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 JMJD7-PLA2G4BH0Y9G9 81 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 XCL1P47992 114 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 HILS1P60008 231 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 SNURFQ9Y675 71 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 TMEM89A2RUT3 159 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 NDUFC2-KCTD14E9PQ53 114 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 WFDC9Q8NEX5 89 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 PRO0628Q9UI54 55 aa7.78□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 A0A096LNT2 108 aa7.77□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 TSHBP01222 138 aa7.77□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 GYPEP15421 78 aa7.77□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 PYGO1Q9Y3Y4 419 aa7.77□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 M0QY20 66 aa7.77□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 Q6JHZ5 121 aa7.77□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 SMIM26A0A096LP01 95 aa7.77□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 Q6ZSN1 163 aa7.76□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 LINC00467Q9BRT7 94 aa7.76□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 TRBV6-5A0A0K0K1A5 114 aa7.75□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 NDUFA1O15239 70 aa7.75□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 TIMM17BO60830 172 aa7.75□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 ANGP03950 147 aaKnown RBP7.74□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 COX7B2Q8TF08 81 aa7.74□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 SERP1Q9Y6X1 66 aa7.74□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 FAM222AQ5U5X8 452 aa7.73□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 OTOGQ6ZRI0 2925 aa7.73□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 ATP5EP2Q5VTU8 51 aa7.73□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 K7EQD1 137 aa7.72□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 SEC61GP60059 68 aa7.72□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 MRPS36P82909 103 aaKnown RBP7.72□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 C1orf158Q8N1D5 194 aa7.72□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 KRTAP1-3Q8IUG1 177 aa7.72□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 CR1P17927 2039 aa7.71□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 LINC00846Q9NV44 126 aa7.71□□□□□ -1.17
MSH5-SAPCD1-207ENST00000493662 F8WEM9 126 aa7.71□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 TMEM256-PLSCR3K7ERE1 68 aa7.71□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 RETNQ9HD89 108 aa7.71□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 FBN1P35555 2871 aaKnown RBP7.71□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 CMC4P56277 68 aaPredicted RBP7.71□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 C9orf66Q5T8R8 295 aa7.71□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 C9orf85Q96MD7 179 aa7.7□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 SOSTDC1Q6X4U4 206 aa7.69□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 C16orf74Q96GX8 76 aa7.69□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 SMCR5Q8TEV8 140 aa7.69□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 SS18Q15532 418 aa7.68□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 FAM19A4Q96LR4 140 aa7.68□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 APOC4P55056 127 aa7.68□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 SCXQ7RTU7 201 aa7.68□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 FAM19A1Q7Z5A9 133 aa7.68□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 SMIM11BQ8TCY0 68 aa7.68□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 TENM1Q9UKZ4 2725 aa7.67□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 SPATA3Q8NHX4 192 aa7.67□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 VWFP04275 2813 aa7.67□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 FSHBP01225 129 aa7.67□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 KMT2BQ9UMN6 2715 aaPredicted RBP7.66□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 IGLV1-51P01701 117 aa7.66□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 TRAV7A0A075B6U4 112 aa7.66□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 FUSP35637 526 aaKnown RBP eCLIP7.65□□□□□ -1.183e-6■□□□□ 9.4
MSH5-SAPCD1-207ENST00000493662 KLK12Q9UKR0 248 aa7.65□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 NDUFC1O43677 76 aa7.65□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 MRPL55Q7Z7F7 128 aaKnown RBP7.65□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 Q8N2B8 174 aa7.65□□□□□ -1.18
MSH5-SAPCD1-207ENST00000493662 A0A087WYN8 130 aa7.64□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 LINC00315P59091 139 aa7.64□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 UBE2D4Q9Y2X8 147 aa7.64□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 WIPF1O43516 503 aa7.64□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 KIF25-AS1Q9Y6Z4 181 aa7.64□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 CCKP06307 115 aa7.64□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 AMELXQ99217 191 aa7.64□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 RPL28P46779 137 aaKnown RBP7.63□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 ZNF575Q86XF7 245 aa7.63□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 IGHV4-28A0A0C4DH34 117 aa7.63□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 IGHV4-30-4P0DP06 118 aa7.63□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 RMI2Q96E14 147 aa7.63□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 ATP5EP56381 51 aaPredicted RBP7.62□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 LINC00336Q6ZUF6 198 aa7.62□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 LINC00269Q8N2A0 174 aa7.62□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 SPART-AS1P0CW21 52 aa7.62□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 KRTAP1-1Q07627 177 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms