RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 FAM168BA1KXE4 195 aa6.6□□□□□ -1.35
COL6A3-214ENST00000493608 IGIPA6NJ69 53 aa6.6□□□□□ -1.35
COL6A3-214ENST00000493608 GAGE2EQ4V326 116 aa6.6□□□□□ -1.35
COL6A3-214ENST00000493608 Q6ZRP5 223 aa6.6□□□□□ -1.35
COL6A3-214ENST00000493608 AMELXQ99217 191 aa6.6□□□□□ -1.35
COL6A3-214ENST00000493608 GAGE2DQ9UEU5 116 aa6.6□□□□□ -1.35
COL6A3-214ENST00000493608 S100PP25815 95 aa6.59□□□□□ -1.35
COL6A3-214ENST00000493608 TOMM7Q9P0U1 55 aa6.59□□□□□ -1.35
COL6A3-214ENST00000493608 TRAV9-1A0A075B6T8 112 aa6.58□□□□□ -1.36
COL6A3-214ENST00000493608 F8WDY8 70 aa6.58□□□□□ -1.36
COL6A3-214ENST00000493608 K7EMI3 77 aa6.58□□□□□ -1.36
COL6A3-214ENST00000493608 TOMM6Q96B49 74 aa6.58□□□□□ -1.36
COL6A3-214ENST00000493608 GNB1LQ9BYB4 327 aa6.58□□□□□ -1.36
COL6A3-214ENST00000493608 RPS10P5Q9NQ39 176 aa6.58□□□□□ -1.36
COL6A3-214ENST00000493608 PSORS1C2Q9UIG4 136 aa6.58□□□□□ -1.36
COL6A3-214ENST00000493608 MT-ND6P03923 174 aa6.57□□□□□ -1.36
COL6A3-214ENST00000493608 FABP9Q0Z7S8 132 aa6.57□□□□□ -1.36
COL6A3-214ENST00000493608 SRSF9Q13242 221 aaKnown RBP eCLIP6.57□□□□□ -1.36
COL6A3-214ENST00000493608 ODF1Q14990 250 aa6.57□□□□□ -1.36
COL6A3-214ENST00000493608 C10orf91Q5T1B1 145 aa6.57□□□□□ -1.36
COL6A3-214ENST00000493608 SPINK6Q6UWN8 80 aa6.57□□□□□ -1.36
COL6A3-214ENST00000493608 FAM19A5Q7Z5A7 132 aaPredicted RBP6.57□□□□□ -1.36
COL6A3-214ENST00000493608 SCGB3A1Q96QR1 104 aa6.57□□□□□ -1.36
COL6A3-214ENST00000493608 ALKBH7Q9BT30 221 aaPredicted RBP6.57□□□□□ -1.36
COL6A3-214ENST00000493608 PRSS2P07478 247 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 TLX1NBP0CAT3 122 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 C6orf226Q5I0X4 101 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 C1orf137Q5JT78 98 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 KRTAP11-1Q8IUC1 163 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 LINC01561Q8N1V8 128 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 PACRGQ96M98 296 aaPredicted RBP6.56□□□□□ -1.36
COL6A3-214ENST00000493608 LINC01600Q96MT4 127 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 TIMM17AQ99595 171 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 CDKN2A-AS1Q9UH64 79 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 TNXBP22105 4242 aa6.56□□□□□ -1.36
COL6A3-214ENST00000493608 TRBV30A0A0K0K1B3 111 aa6.55□□□□□ -1.36
COL6A3-214ENST00000493608 NPSP0C0P6 89 aa6.55□□□□□ -1.36
COL6A3-214ENST00000493608 G0S2P27469 103 aa6.55□□□□□ -1.36
COL6A3-214ENST00000493608 PAPPA-AS1Q5QFB9 102 aa6.55□□□□□ -1.36
COL6A3-214ENST00000493608 ERASQ7Z444 233 aa6.55□□□□□ -1.36
COL6A3-214ENST00000493608 FAM19A3Q7Z5A8 133 aa6.55□□□□□ -1.36
COL6A3-214ENST00000493608 GEMIN7Q9H840 131 aaKnown RBP6.55□□□□□ -1.36
COL6A3-214ENST00000493608 KRTAP23-1A1A580 65 aa6.54□□□□□ -1.36
COL6A3-214ENST00000493608 CKS1BP61024 79 aa6.54□□□□□ -1.36
COL6A3-214ENST00000493608 HERVK_113P63121 156 aa6.54□□□□□ -1.36
COL6A3-214ENST00000493608 C9orf129Q5T035 196 aaKnown RBP6.54□□□□□ -1.36
COL6A3-214ENST00000493608 KRTAP7-1Q8IUC3 87 aa6.54□□□□□ -1.36
COL6A3-214ENST00000493608 LINC00469Q8N7U9 141 aa6.54□□□□□ -1.36
COL6A3-214ENST00000493608 CARHSP1Q9Y2V2 147 aaKnown RBP6.54□□□□□ -1.36
COL6A3-214ENST00000493608 LINC01546A6NGU7 62 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 NDUFC2-KCTD14E9PQ53 114 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 SEC11AP67812 179 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 RHEBQ15382 184 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 COX19Q49B96 90 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 REG3GQ6UW15 175 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 FA2HQ7L5A8 372 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 Q8IZM0 81 aa6.53□□□□□ -1.36
COL6A3-214ENST00000493608 APOC3P02656 99 aa6.52□□□□□ -1.37
COL6A3-214ENST00000493608 KRTAP10-8P60410 259 aa6.52□□□□□ -1.37
COL6A3-214ENST00000493608 CST9LQ9H4G1 147 aa6.52□□□□□ -1.37
COL6A3-214ENST00000493608 SMCO4Q9NRQ5 59 aa6.52□□□□□ -1.37
COL6A3-214ENST00000493608 TINCRA0A1B0GVN0 87 aa6.51□□□□□ -1.37
COL6A3-214ENST00000493608 M0QXV9 152 aa6.51□□□□□ -1.37
COL6A3-214ENST00000493608 UBE2BP63146 152 aa6.51□□□□□ -1.37
COL6A3-214ENST00000493608 XAGE1AQ9HD64 81 aa6.51□□□□□ -1.37
COL6A3-214ENST00000493608 TRAPPC1Q9Y5R8 145 aa6.51□□□□□ -1.37
COL6A3-214ENST00000493608 SMIM1B2RUZ4 78 aa6.5□□□□□ -1.37
COL6A3-214ENST00000493608 IGLV7-43P04211 117 aa6.5□□□□□ -1.37
COL6A3-214ENST00000493608 SPINK8P0C7L1 97 aa6.5□□□□□ -1.37
COL6A3-214ENST00000493608 NDUFA6P56556 154 aa6.5□□□□□ -1.37
COL6A3-214ENST00000493608 URB1-AS1Q96HZ7 61 aa6.5□□□□□ -1.37
COL6A3-214ENST00000493608 HMCN2Q8NDA2 5059 aa6.5□□□□□ -1.37
COL6A3-214ENST00000493608 F8VRH5 84 aa6.49□□□□□ -1.37
COL6A3-214ENST00000493608 PMVKQ15126 192 aa6.49□□□□□ -1.37
COL6A3-214ENST00000493608 PMCHL1Q16048 86 aa6.49□□□□□ -1.37
COL6A3-214ENST00000493608 C18orf32Q8TCD1 76 aa6.49□□□□□ -1.37
COL6A3-214ENST00000493608 COX7B2Q8TF08 81 aa6.49□□□□□ -1.37
COL6A3-214ENST00000493608 A0A096LNJ9 63 aa6.48□□□□□ -1.37
COL6A3-214ENST00000493608 LINC01549A6NIU2 74 aa6.48□□□□□ -1.37
COL6A3-214ENST00000493608 RAB5BP61020 215 aa6.48□□□□□ -1.37
COL6A3-214ENST00000493608 PDZD11Q5EBL8 140 aa6.48□□□□□ -1.37
COL6A3-214ENST00000493608 C22orf24Q9Y442 160 aa6.48□□□□□ -1.37
COL6A3-214ENST00000493608 IGLV5-45A0A087WSX0 123 aa6.47□□□□□ -1.37
COL6A3-214ENST00000493608 LINC00614P0C842 121 aa6.47□□□□□ -1.37
COL6A3-214ENST00000493608 SNAPINO95295 136 aa6.46□□□□□ -1.38
COL6A3-214ENST00000493608 CXCL5P42830 114 aa6.46□□□□□ -1.38
COL6A3-214ENST00000493608 NDUFA5Q16718 116 aa6.46□□□□□ -1.38
COL6A3-214ENST00000493608 SVBPQ8N300 66 aa6.46□□□□□ -1.38
COL6A3-214ENST00000493608 DIRC1Q969H9 104 aa6.46□□□□□ -1.38
COL6A3-214ENST00000493608 KRTAP15-1Q3LI76 137 aa6.45□□□□□ -1.38
COL6A3-214ENST00000493608 PRR26Q8N8Z3 221 aa6.45□□□□□ -1.38
COL6A3-214ENST00000493608 H0Y9J4 135 aa6.44□□□□□ -1.38
COL6A3-214ENST00000493608 H3BRM9 83 aa6.44□□□□□ -1.38
COL6A3-214ENST00000493608 HBDP02042 147 aa6.44□□□□□ -1.38
COL6A3-214ENST00000493608 IGLC3P0DOY3 106 aa6.44□□□□□ -1.38
COL6A3-214ENST00000493608 KRTAP9-8Q9BYQ0 159 aa6.44□□□□□ -1.38
COL6A3-214ENST00000493608 GAGE10A6NGK3 116 aa6.43□□□□□ -1.38
COL6A3-214ENST00000493608 RPL37AP8A6NKH3 93 aa6.43□□□□□ -1.38
COL6A3-214ENST00000493608 ZNF22P17026 224 aaPredicted RBP6.43□□□□□ -1.38
COL6A3-214ENST00000493608 LBHQ53QV2 105 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms