RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 A0A096LNJ9 63 aa13.1□□□□□ -0.31
LIME1-207ENST00000489212 MT1HL1P0DM35 61 aa13.1□□□□□ -0.31
LIME1-207ENST00000489212 PHF5AQ7RTV0 110 aaKnown RBP13.1□□□□□ -0.31
LIME1-207ENST00000489212 CST9LQ9H4G1 147 aa13.1□□□□□ -0.31
LIME1-207ENST00000489212 PRSS2P07478 247 aa13.09□□□□□ -0.31
LIME1-207ENST00000489212 Q8IZM0 81 aa13.09□□□□□ -0.31
LIME1-207ENST00000489212 PACRGQ96M98 296 aaPredicted RBP13.09□□□□□ -0.31
LIME1-207ENST00000489212 YPEL4Q96NS1 127 aa13.09□□□□□ -0.31
LIME1-207ENST00000489212 TINCRA0A1B0GVN0 87 aa13.08□□□□□ -0.32
LIME1-207ENST00000489212 C6orf226Q5I0X4 101 aa13.08□□□□□ -0.32
LIME1-207ENST00000489212 LINC00469Q8N7U9 141 aa13.08□□□□□ -0.32
LIME1-207ENST00000489212 NDUFC2-KCTD14E9PQ53 114 aa13.07□□□□□ -0.32
LIME1-207ENST00000489212 KRTAP7-1Q8IUC3 87 aa13.07□□□□□ -0.32
LIME1-207ENST00000489212 IGLV5-45A0A087WSX0 123 aa13.06□□□□□ -0.32
LIME1-207ENST00000489212 SMIM1B2RUZ4 78 aa13.06□□□□□ -0.32
LIME1-207ENST00000489212 LINC00614P0C842 121 aa13.06□□□□□ -0.32
LIME1-207ENST00000489212 CKS1BP61024 79 aa13.06□□□□□ -0.32
LIME1-207ENST00000489212 PMVKQ15126 192 aa13.06□□□□□ -0.32
LIME1-207ENST00000489212 PSORS1C2Q9UIG4 136 aa13.06□□□□□ -0.32
LIME1-207ENST00000489212 HMCN2Q8NDA2 5059 aa13.06□□□□□ -0.32
LIME1-207ENST00000489212 SRSF9Q13242 221 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIME1-207ENST00000489212 FAM19A5Q7Z5A7 132 aaPredicted RBP13.05□□□□□ -0.32
LIME1-207ENST00000489212 PMCHL1Q16048 86 aa13.04□□□□□ -0.32
LIME1-207ENST00000489212 C9orf129Q5T035 196 aaKnown RBP13.04□□□□□ -0.32
LIME1-207ENST00000489212 SPINK6Q6UWN8 80 aa13.03□□□□□ -0.32
LIME1-207ENST00000489212 KRTAP11-1Q8IUC1 163 aa13.03□□□□□ -0.32
LIME1-207ENST00000489212 PDZD11Q5EBL8 140 aa13.02□□□□□ -0.33
LIME1-207ENST00000489212 F8VRH5 84 aa13.01□□□□□ -0.33
LIME1-207ENST00000489212 HBDP02042 147 aa13.01□□□□□ -0.33
LIME1-207ENST00000489212 SPINK8P0C7L1 97 aa13□□□□□ -0.33
LIME1-207ENST00000489212 CBLN2Q8IUK8 224 aa13□□□□□ -0.33
LIME1-207ENST00000489212 COX7B2Q8TF08 81 aa13□□□□□ -0.33
LIME1-207ENST00000489212 IGLC3P0DOY3 106 aa12.99□□□□□ -0.33
LIME1-207ENST00000489212 C1orf137Q5JT78 98 aa12.99□□□□□ -0.33
LIME1-207ENST00000489212 CXCL5P42830 114 aa12.98□□□□□ -0.33
LIME1-207ENST00000489212 NDUFA6P56556 154 aa12.98□□□□□ -0.33
LIME1-207ENST00000489212 SERTAD4-AS1Q5TG53 156 aa12.98□□□□□ -0.33
LIME1-207ENST00000489212 LINC01600Q96MT4 127 aa12.98□□□□□ -0.33
LIME1-207ENST00000489212 M0QXV9 152 aa12.97□□□□□ -0.33
LIME1-207ENST00000489212 RAB5BP61020 215 aa12.97□□□□□ -0.33
LIME1-207ENST00000489212 SLC7A5P1Q8MH63 180 aa12.96□□□□□ -0.33
LIME1-207ENST00000489212 XAGE1AQ9HD64 81 aa12.96□□□□□ -0.33
LIME1-207ENST00000489212 H3BRM9 83 aa12.94□□□□□ -0.34
LIME1-207ENST00000489212 ZNF22P17026 224 aaPredicted RBP12.94□□□□□ -0.34
LIME1-207ENST00000489212 ATP5LO75964 103 aa12.93□□□□□ -0.34
LIME1-207ENST00000489212 REG3GQ6UW15 175 aa12.93□□□□□ -0.34
LIME1-207ENST00000489212 IGLV5-39A0A0G2JS06 123 aa12.92□□□□□ -0.34
LIME1-207ENST00000489212 IGLV7-43P04211 117 aa12.92□□□□□ -0.34
LIME1-207ENST00000489212 BAGE3Q86Y29 109 aa12.92□□□□□ -0.34
LIME1-207ENST00000489212 UBE2BP63146 152 aa12.91□□□□□ -0.34
LIME1-207ENST00000489212 CHCHD1Q96BP2 118 aaKnown RBP12.91□□□□□ -0.34
LIME1-207ENST00000489212 C11orf86A6NJI1 115 aa12.9□□□□□ -0.34
LIME1-207ENST00000489212 C22orf24Q9Y442 160 aa12.9□□□□□ -0.34
LIME1-207ENST00000489212 KRTAP10-8P60410 259 aa12.89□□□□□ -0.35
LIME1-207ENST00000489212 ODF1Q14990 250 aa12.88□□□□□ -0.35
LIME1-207ENST00000489212 TRGC2P03986 189 aa12.87□□□□□ -0.35
LIME1-207ENST00000489212 PLA2G2DQ9UNK4 145 aa12.87□□□□□ -0.35
LIME1-207ENST00000489212 IFI27L1Q96BM0 104 aa12.85□□□□□ -0.35
LIME1-207ENST00000489212 CHTOPQ9Y3Y2 248 aaKnown RBP12.85□□□□□ -0.35
LIME1-207ENST00000489212 TMEM170BQ5T4T1 132 aa12.84□□□□□ -0.35
LIME1-207ENST00000489212 FAM19A2Q8N3H0 131 aa12.84□□□□□ -0.35
LIME1-207ENST00000489212 DIRC1Q969H9 104 aa12.83□□□□□ -0.36
LIME1-207ENST00000489212 TP73-AS1Q9UF72 201 aa12.83□□□□□ -0.36
LIME1-207ENST00000489212 TRAV12-1A0A0B4J245 112 aa12.82□□□□□ -0.36
LIME1-207ENST00000489212 LINC00310P59036 64 aa12.82□□□□□ -0.36
LIME1-207ENST00000489212 LBHQ53QV2 105 aaPredicted RBP12.82□□□□□ -0.36
LIME1-207ENST00000489212 MRPL55Q7Z7F7 128 aaKnown RBP12.82□□□□□ -0.36
LIME1-207ENST00000489212 H0Y9J4 135 aa12.81□□□□□ -0.36
LIME1-207ENST00000489212 HSBP1O75506 76 aa12.81□□□□□ -0.36
LIME1-207ENST00000489212 PFN2P35080 140 aa12.81□□□□□ -0.36
LIME1-207ENST00000489212 COLCA2A8K830 154 aa12.8□□□□□ -0.36
LIME1-207ENST00000489212 ZNF625Q96I27 306 aaPredicted RBP12.79□□□□□ -0.36
LIME1-207ENST00000489212 TMEM223A0PJW6 202 aa12.78□□□□□ -0.36
LIME1-207ENST00000489212 SERF1AO75920 110 aa12.78□□□□□ -0.36
LIME1-207ENST00000489212 LINC00167Q96N53 147 aa12.78□□□□□ -0.36
LIME1-207ENST00000489212 ERG28Q9UKR5 140 aa12.78□□□□□ -0.36
LIME1-207ENST00000489212 IGLV5-37A0A075B6J1 123 aa12.77□□□□□ -0.37
LIME1-207ENST00000489212 UBR4Q5T4S7 5183 aa12.76□□□□□ -0.37
LIME1-207ENST00000489212 GAGE10A6NGK3 116 aa12.76□□□□□ -0.37
LIME1-207ENST00000489212 RPL37AP8A6NKH3 93 aa12.76□□□□□ -0.37
LIME1-207ENST00000489212 NUPR1O60356 82 aa12.76□□□□□ -0.37
LIME1-207ENST00000489212 KRTAP1-4P0C5Y4 121 aa12.75□□□□□ -0.37
LIME1-207ENST00000489212 SND1-IT1Q9HBX3 110 aa12.75□□□□□ -0.37
LIME1-207ENST00000489212 ZNF861PO60384 105 aa12.74□□□□□ -0.37
LIME1-207ENST00000489212 SCO1O75880 301 aa12.74□□□□□ -0.37
LIME1-207ENST00000489212 PRR26Q8N8Z3 221 aa12.74□□□□□ -0.37
LIME1-207ENST00000489212 COX17Q14061 63 aa12.73□□□□□ -0.37
LIME1-207ENST00000489212 H0Y8G0 127 aa12.72□□□□□ -0.37
LIME1-207ENST00000489212 LEPROTL1O95214 131 aa12.72□□□□□ -0.37
LIME1-207ENST00000489212 SFTA2Q6UW10 78 aa12.72□□□□□ -0.37
LIME1-207ENST00000489212 NKAPP1Q8N9T2 125 aa12.72□□□□□ -0.37
LIME1-207ENST00000489212 BCE1O60756 84 aa12.71□□□□□ -0.37
LIME1-207ENST00000489212 VPREB1P12018 145 aa12.71□□□□□ -0.37
LIME1-207ENST00000489212 Q8NDZ9 215 aa12.71□□□□□ -0.37
LIME1-207ENST00000489212 LRP2P98164 4655 aa12.69□□□□□ -0.38
LIME1-207ENST00000489212 FABP4P15090 132 aa12.67□□□□□ -0.38
LIME1-207ENST00000489212 LINC00158P58513 81 aa12.67□□□□□ -0.38
LIME1-207ENST00000489212 IGKV2-28A0A075B6P5 120 aa12.66□□□□□ -0.38
LIME1-207ENST00000489212 A0A0U1RRA0 63 aa12.66□□□□□ -0.38
LIME1-207ENST00000489212 IGKV2D-28P01615 120 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms