RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 A0A087WVE0 104 aa11.75□□□□□ -0.53
COL7A1-210ENST00000487017 PRR3P79522 188 aaKnown RBP11.75□□□□□ -0.53
COL7A1-210ENST00000487017 Q6ZVQ6 151 aa11.73□□□□□ -0.53
COL7A1-210ENST00000487017 HIVEP3Q5T1R4 2406 aa11.73□□□□□ -0.53
COL7A1-210ENST00000487017 RETNLBQ9BQ08 111 aa11.73□□□□□ -0.53
COL7A1-210ENST00000487017 KIF25-AS1Q9Y6Z4 181 aa11.72□□□□□ -0.53
COL7A1-210ENST00000487017 C10orf25Q5T742 122 aa11.72□□□□□ -0.53
COL7A1-210ENST00000487017 ESRGQ1W209 222 aa11.71□□□□□ -0.53
COL7A1-210ENST00000487017 SOSTDC1Q6X4U4 206 aa11.71□□□□□ -0.54
COL7A1-210ENST00000487017 KRTAP10-9P60411 292 aa11.7□□□□□ -0.54
COL7A1-210ENST00000487017 CIRBP-AS1Q8TBR5 109 aa11.7□□□□□ -0.54
COL7A1-210ENST00000487017 SMR3AQ99954 134 aa11.68□□□□□ -0.54
COL7A1-210ENST00000487017 A0A1B0GUV1 79 aa11.68□□□□□ -0.54
COL7A1-210ENST00000487017 C1orf137Q5JT78 98 aa11.68□□□□□ -0.54
COL7A1-210ENST00000487017 PIEZO2Q9H5I5 2752 aa11.67□□□□□ -0.54
COL7A1-210ENST00000487017 LINC00208Q96KT6 92 aa11.67□□□□□ -0.54
COL7A1-210ENST00000487017 LINC00474Q9P2X8 69 aa11.67□□□□□ -0.54
COL7A1-210ENST00000487017 X6R8D5 127 aa11.67□□□□□ -0.54
COL7A1-210ENST00000487017 PMAIP1Q13794 54 aa11.67□□□□□ -0.54
COL7A1-210ENST00000487017 C6orf223Q8N319 242 aa11.67□□□□□ -0.54
COL7A1-210ENST00000487017 C16orf95Q9H693 158 aa11.66□□□□□ -0.54
COL7A1-210ENST00000487017 IGHV6-1A0A0B4J1U7 121 aa11.66□□□□□ -0.54
COL7A1-210ENST00000487017 ADAMTS20P59510 1910 aa11.66□□□□□ -0.54
COL7A1-210ENST00000487017 LINC01561Q8N1V8 128 aa11.65□□□□□ -0.54
COL7A1-210ENST00000487017 CDIP1Q9H305 208 aa11.65□□□□□ -0.54
COL7A1-210ENST00000487017 MYO18BQ8IUG5 2567 aa11.65□□□□□ -0.54
COL7A1-210ENST00000487017 DOPEY1Q5JWR5 2465 aa11.64□□□□□ -0.55
COL7A1-210ENST00000487017 Q8N3U1 123 aa11.64□□□□□ -0.55
COL7A1-210ENST00000487017 EP400Q96L91 3159 aa11.63□□□□□ -0.55
COL7A1-210ENST00000487017 REG3GQ6UW15 175 aa11.63□□□□□ -0.55
COL7A1-210ENST00000487017 IGF2RP11717 2491 aa11.63□□□□□ -0.55
COL7A1-210ENST00000487017 LINC00337Q8N6G1 96 aa11.63□□□□□ -0.55
COL7A1-210ENST00000487017 CCDC168Q8NDH2 2452 aa11.62□□□□□ -0.55
COL7A1-210ENST00000487017 TET2Q6N021 2002 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-210ENST00000487017 LINC00315P59091 139 aa11.62□□□□□ -0.55
COL7A1-210ENST00000487017 SPINK1P00995 79 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 LINC00575Q6W349 94 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 LINC00846Q9NV44 126 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 IGLV5-39A0A0G2JS06 123 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 PCOTHQ58A44 107 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 FAM19A4Q96LR4 140 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 TRBV7-6A0A0J9YX20 115 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 PRRC2AP48634 2157 aaKnown RBP11.61□□□□□ -0.55
COL7A1-210ENST00000487017 PRYO14603 147 aa11.61□□□□□ -0.55
COL7A1-210ENST00000487017 C11orf72Q8NBR9 251 aa11.6□□□□□ -0.55
COL7A1-210ENST00000487017 F8WDY8 70 aa11.6□□□□□ -0.55
COL7A1-210ENST00000487017 LINC01547P58512 204 aaPredicted RBP11.6□□□□□ -0.55
COL7A1-210ENST00000487017 NUPR2A6NF83 97 aa11.6□□□□□ -0.55
COL7A1-210ENST00000487017 TRBV7-7A0A0K0K1E9 115 aa11.59□□□□□ -0.55
COL7A1-210ENST00000487017 DEFB116Q30KQ4 102 aa11.59□□□□□ -0.55
COL7A1-210ENST00000487017 Q6ZTC4 211 aa11.59□□□□□ -0.55
COL7A1-210ENST00000487017 PLA2G2AP14555 144 aa11.59□□□□□ -0.55
COL7A1-210ENST00000487017 C2orf48Q96LS8 159 aa11.59□□□□□ -0.55
COL7A1-210ENST00000487017 ABCA2Q9BZC7 2435 aa11.58□□□□□ -0.56
COL7A1-210ENST00000487017 IGLV5-52A0A0A0MRZ9 124 aa11.58□□□□□ -0.56
COL7A1-210ENST00000487017 LINC01556Q5JQF7 62 aa11.57□□□□□ -0.56
COL7A1-210ENST00000487017 NCOR2Q9Y618 2525 aa11.57□□□□□ -0.56
COL7A1-210ENST00000487017 LYPD5Q6UWN5 251 aa11.56□□□□□ -0.56
COL7A1-210ENST00000487017 SMCPP49901 116 aaPredicted RBP11.55□□□□□ -0.56
COL7A1-210ENST00000487017 Q9BRP9 147 aa11.55□□□□□ -0.56
COL7A1-210ENST00000487017 A8MTW9 85 aa11.55□□□□□ -0.56
COL7A1-210ENST00000487017 TLN1Q9Y490 2541 aaKnown RBP11.54□□□□□ -0.56
COL7A1-210ENST00000487017 PSPHP1O15172 72 aa11.54□□□□□ -0.56
COL7A1-210ENST00000487017 MYO9AB2RTY4 2548 aa11.53□□□□□ -0.56
COL7A1-210ENST00000487017 AGRNO00468 2067 aa11.53□□□□□ -0.56
COL7A1-210ENST00000487017 A0A087WSZ3 146 aa11.52□□□□□ -0.56
COL7A1-210ENST00000487017 PRO0461Q9UI25 63 aa11.52□□□□□ -0.56
COL7A1-210ENST00000487017 WDR87Q6ZQQ6 2873 aa11.52□□□□□ -0.57
COL7A1-210ENST00000487017 IGHV3OR16-9A0A0B4J2B5 98 aa11.51□□□□□ -0.57
COL7A1-210ENST00000487017 Q8N2B8 174 aa11.51□□□□□ -0.57
COL7A1-210ENST00000487017 Q6ZRU5 148 aa11.51□□□□□ -0.57
COL7A1-210ENST00000487017 TMEM254Q8TBM7 123 aa11.5□□□□□ -0.57
COL7A1-210ENST00000487017 IGLV5-45A0A087WSX0 123 aa11.5□□□□□ -0.57
COL7A1-210ENST00000487017 CXCL6P80162 114 aa11.49□□□□□ -0.57
COL7A1-210ENST00000487017 SBSPONQ8IVN8 264 aa11.49□□□□□ -0.57
COL7A1-210ENST00000487017 H0Y9P7 68 aa11.48□□□□□ -0.57
COL7A1-210ENST00000487017 PRO0628Q9UI54 55 aa11.46□□□□□ -0.57
COL7A1-210ENST00000487017 CRYGAP11844 174 aa11.45□□□□□ -0.58
COL7A1-210ENST00000487017 PRLHP81277 87 aa11.44□□□□□ -0.58
COL7A1-210ENST00000487017 HCG22E2RYF7 251 aa11.44□□□□□ -0.58
COL7A1-210ENST00000487017 FAM218AQ96MZ4 157 aa11.43□□□□□ -0.58
COL7A1-210ENST00000487017 PTPRBP23467 1997 aa11.42□□□□□ -0.58
COL7A1-210ENST00000487017 SPATA3Q8NHX4 192 aa11.41□□□□□ -0.58
COL7A1-210ENST00000487017 PIEZO1Q92508 2521 aa11.41□□□□□ -0.58
COL7A1-210ENST00000487017 C1orf134Q5TEV5 83 aa11.4□□□□□ -0.58
COL7A1-210ENST00000487017 Q9UF83 564 aa11.4□□□□□ -0.58
COL7A1-210ENST00000487017 C22orf24Q9Y442 160 aa11.39□□□□□ -0.59
COL7A1-210ENST00000487017 COL4A2P08572 1712 aa11.39□□□□□ -0.59
COL7A1-210ENST00000487017 C4orf26Q17RF5 130 aa11.38□□□□□ -0.59
COL7A1-210ENST00000487017 KIAA0087Q14695 138 aa11.38□□□□□ -0.59
COL7A1-210ENST00000487017 FSHBP01225 129 aa11.37□□□□□ -0.59
COL7A1-210ENST00000487017 IGKV2D-30A0A075B6S6 120 aa11.37□□□□□ -0.59
COL7A1-210ENST00000487017 IGKV2-30P06310 120 aa11.37□□□□□ -0.59
COL7A1-210ENST00000487017 hDV103S1A0JD37 113 aa11.36□□□□□ -0.59
COL7A1-210ENST00000487017 FHL3Q13643 280 aa11.36□□□□□ -0.59
COL7A1-210ENST00000487017 C6orf48Q9UBA6 75 aa11.36□□□□□ -0.59
COL7A1-210ENST00000487017 COL27A1Q8IZC6 1860 aaPredicted RBP11.35□□□□□ -0.59
COL7A1-210ENST00000487017 SMCR5Q8TEV8 140 aa11.35□□□□□ -0.59
COL7A1-210ENST00000487017 BCE1O60756 84 aa11.35□□□□□ -0.59
COL7A1-210ENST00000487017 KLK9Q2XQG4 91 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms