RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 FAM19A1Q7Z5A9 133 aa9.74□□□□□ -0.85
USP42-206ENST00000479544 LRRC75A-AS1Q8N1F1 130 aa9.73□□□□□ -0.85
USP42-206ENST00000479544 C9orf116Q5BN46 136 aaPredicted RBP9.73□□□□□ -0.85
USP42-206ENST00000479544 LINC00337Q8N6G1 96 aa9.73□□□□□ -0.85
USP42-206ENST00000479544 TMEM89A2RUT3 159 aa9.72□□□□□ -0.85
USP42-206ENST00000479544 DEFB135Q30KP9 77 aa9.72□□□□□ -0.85
USP42-206ENST00000479544 FAM218AQ96MZ4 157 aa9.72□□□□□ -0.85
USP42-206ENST00000479544 NREPQ16612 68 aa9.72□□□□□ -0.85
USP42-206ENST00000479544 IBA57-AS1B1ANH7 110 aa9.72□□□□□ -0.85
USP42-206ENST00000479544 KIR2DL5BQ8NHK3 375 aa9.72□□□□□ -0.85
USP42-206ENST00000479544 A8MTW9 85 aa9.71□□□□□ -0.85
USP42-206ENST00000479544 SOSTDC1Q6X4U4 206 aa9.71□□□□□ -0.85
USP42-206ENST00000479544 NKAPP1Q8N9T2 125 aa9.71□□□□□ -0.85
USP42-206ENST00000479544 IGLV4-60A0A075B6I1 120 aa9.71□□□□□ -0.85
USP42-206ENST00000479544 Q6ZQY7 126 aa9.71□□□□□ -0.85
USP42-206ENST00000479544 TRBV6-8A0A0A6YYG3 113 aa9.71□□□□□ -0.86
USP42-206ENST00000479544 TMEM258P61165 79 aa9.71□□□□□ -0.86
USP42-206ENST00000479544 CSDC2Q9Y534 153 aaKnown RBP9.71□□□□□ -0.86
USP42-206ENST00000479544 HIGD2BQ4VC39 106 aa9.7□□□□□ -0.86
USP42-206ENST00000479544 CAMK2N2Q96S95 79 aa9.7□□□□□ -0.86
USP42-206ENST00000479544 DEFB113Q30KQ7 82 aa9.69□□□□□ -0.86
USP42-206ENST00000479544 ZNF575Q86XF7 245 aa9.69□□□□□ -0.86
USP42-206ENST00000479544 NBEAL2Q6ZNJ1 2754 aa9.69□□□□□ -0.86
USP42-206ENST00000479544 TRBV7-7A0A0K0K1E9 115 aa9.69□□□□□ -0.86
USP42-206ENST00000479544 CHCHD10Q8WYQ3 142 aaPredicted RBP9.68□□□□□ -0.86
USP42-206ENST00000479544 IGKV2D-24A0A075B6R9 120 aa9.68□□□□□ -0.86
USP42-206ENST00000479544 PRR4Q16378 134 aa9.67□□□□□ -0.86
USP42-206ENST00000479544 RPL28P46779 137 aaKnown RBP9.67□□□□□ -0.86
USP42-206ENST00000479544 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.66□□□□□ -0.86
USP42-206ENST00000479544 DIRC1Q969H9 104 aa9.66□□□□□ -0.86
USP42-206ENST00000479544 ODF3L2Q3SX64 289 aa9.66□□□□□ -0.86
USP42-206ENST00000479544 COL12A1Q99715 3063 aa9.66□□□□□ -0.86
USP42-206ENST00000479544 LRCOL1A6NCL2 159 aa9.66□□□□□ -0.86
USP42-206ENST00000479544 C3orf84H3BNL1 204 aa9.66□□□□□ -0.86
USP42-206ENST00000479544 LINC00959A0A1B0GUT2 108 aa9.65□□□□□ -0.86
USP42-206ENST00000479544 REG3AQ06141 175 aa9.65□□□□□ -0.86
USP42-206ENST00000479544 C4orf3Q8WVX3 66 aa9.65□□□□□ -0.86
USP42-206ENST00000479544 FAM222AQ5U5X8 452 aa9.65□□□□□ -0.86
USP42-206ENST00000479544 Q6JHZ5 121 aa9.65□□□□□ -0.86
USP42-206ENST00000479544 SMCR5Q8TEV8 140 aa9.65□□□□□ -0.86
USP42-206ENST00000479544 PRO0255Q9UI72 69 aa9.65□□□□□ -0.86
USP42-206ENST00000479544 F8WEM9 126 aa9.64□□□□□ -0.87
USP42-206ENST00000479544 LITAFQ99732 161 aa9.64□□□□□ -0.87
USP42-206ENST00000479544 ZNF702PQ9H963 129 aa9.64□□□□□ -0.87
USP42-206ENST00000479544 LINC00482Q8N8I6 264 aa9.64□□□□□ -0.87
USP42-206ENST00000479544 C1orf158Q8N1D5 194 aa9.63□□□□□ -0.87
USP42-206ENST00000479544 ITPR1Q14643 2758 aa9.63□□□□□ -0.87
USP42-206ENST00000479544 Q6YL49 198 aa9.63□□□□□ -0.87
USP42-206ENST00000479544 C4orf26Q17RF5 130 aa9.62□□□□□ -0.87
USP42-206ENST00000479544 FAM19A4Q96LR4 140 aa9.62□□□□□ -0.87
USP42-206ENST00000479544 NTM-AS1Q6ZSK4 140 aa9.61□□□□□ -0.87
USP42-206ENST00000479544 ZFHX4Q86UP3 3567 aa9.61□□□□□ -0.87
USP42-206ENST00000479544 COL27A1Q8IZC6 1860 aaPredicted RBP9.61□□□□□ -0.87
USP42-206ENST00000479544 TRBV6-4A0A1B0GX49 114 aa9.61□□□□□ -0.87
USP42-206ENST00000479544 NDUFC2O95298 119 aa9.61□□□□□ -0.87
USP42-206ENST00000479544 CCKP06307 115 aa9.61□□□□□ -0.87
USP42-206ENST00000479544 FLNAP21333 2647 aaKnown RBP9.61□□□□□ -0.87
USP42-206ENST00000479544 IGHV4-31P0DP07 118 aa9.61□□□□□ -0.87
USP42-206ENST00000479544 UNC79Q9P2D8 2635 aa9.61□□□□□ -0.87
USP42-206ENST00000479544 MGAM2Q2M2H8 2515 aa9.6□□□□□ -0.87
USP42-206ENST00000479544 BPY2O14599 106 aa9.6□□□□□ -0.87
USP42-206ENST00000479544 COX7BP24311 80 aa9.6□□□□□ -0.87
USP42-206ENST00000479544 FUSP35637 526 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP42-206ENST00000479544 UBE2BP63146 152 aa9.6□□□□□ -0.87
USP42-206ENST00000479544 UNQ6190/PRO20217Q6UXQ8 127 aa9.6□□□□□ -0.87
USP42-206ENST00000479544 RMI2Q96E14 147 aa9.59□□□□□ -0.87
USP42-206ENST00000479544 CELA1Q9UNI1 258 aa9.59□□□□□ -0.87
USP42-206ENST00000479544 DNAJC9-AS1A6NH13 148 aa9.58□□□□□ -0.88
USP42-206ENST00000479544 Q8N814 137 aa9.58□□□□□ -0.88
USP42-206ENST00000479544 IGLV5-39A0A0G2JS06 123 aa9.57□□□□□ -0.88
USP42-206ENST00000479544 ITPR3Q14573 2671 aa9.57□□□□□ -0.88
USP42-206ENST00000479544 ATP5EP2Q5VTU8 51 aa9.57□□□□□ -0.88
USP42-206ENST00000479544 ETDCA0A1B0GVM5 59 aa9.56□□□□□ -0.88
USP42-206ENST00000479544 Q8N3U1 123 aa9.56□□□□□ -0.88
USP42-206ENST00000479544 IGKV2-28A0A075B6P5 120 aa9.56□□□□□ -0.88
USP42-206ENST00000479544 IGKV2D-28P01615 120 aa9.56□□□□□ -0.88
USP42-206ENST00000479544 Q8N9L7 120 aa9.56□□□□□ -0.88
USP42-206ENST00000479544 A0A087WZ39 114 aa9.55□□□□□ -0.88
USP42-206ENST00000479544 C6orf223Q8N319 242 aa9.54□□□□□ -0.88
USP42-206ENST00000479544 C11orf72Q8NBR9 251 aa9.54□□□□□ -0.88
USP42-206ENST00000479544 SPART-AS1P0CW21 52 aa9.53□□□□□ -0.88
USP42-206ENST00000479544 APOC4P55056 127 aa9.53□□□□□ -0.88
USP42-206ENST00000479544 KRTAP10-9P60411 292 aa9.53□□□□□ -0.88
USP42-206ENST00000479544 A0A096LNI7 61 aa9.53□□□□□ -0.88
USP42-206ENST00000479544 CRYGAP11844 174 aa9.53□□□□□ -0.88
USP42-206ENST00000479544 LINC01006Q8NI28 216 aa9.53□□□□□ -0.88
USP42-206ENST00000479544 NDUFC2-KCTD14E9PQ53 114 aa9.53□□□□□ -0.88
USP42-206ENST00000479544 BEAN1Q3B7T3 259 aa9.52□□□□□ -0.88
USP42-206ENST00000479544 PDE6GP18545 87 aa9.52□□□□□ -0.89
USP42-206ENST00000479544 CD164L2Q6UWJ8 174 aa9.52□□□□□ -0.89
USP42-206ENST00000479544 DEFB121Q5J5C9 76 aa9.52□□□□□ -0.89
USP42-206ENST00000479544 NANOS2P60321 138 aaKnown RBP9.51□□□□□ -0.89
USP42-206ENST00000479544 C9orf129Q5T035 196 aaKnown RBP9.51□□□□□ -0.89
USP42-206ENST00000479544 PSCAO43653 123 aa9.51□□□□□ -0.89
USP42-206ENST00000479544 TRBV10-3A0A0K0K1G6 114 aa9.51□□□□□ -0.89
USP42-206ENST00000479544 IGHV3OR16-9A0A0B4J2B5 98 aa9.5□□□□□ -0.89
USP42-206ENST00000479544 MIFP14174 115 aa9.5□□□□□ -0.89
USP42-206ENST00000479544 TRAV7A0A075B6U4 112 aa9.5□□□□□ -0.89
USP42-206ENST00000479544 SPTSSBQ8NFR3 76 aa9.5□□□□□ -0.89
USP42-206ENST00000479544 Q8IZM0 81 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms