RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 SS18L2Q9UHA2 77 aa7.51□□□□□ -1.21
VPS52-217ENST00000478934 BAALC-AS2P0C853 105 aa7.5□□□□□ -1.21
VPS52-217ENST00000478934 FAM222AQ5U5X8 452 aa7.5□□□□□ -1.21
VPS52-217ENST00000478934 LINC01600Q96MT4 127 aa7.5□□□□□ -1.21
VPS52-217ENST00000478934 C22orf24Q9Y442 160 aa7.5□□□□□ -1.21
VPS52-217ENST00000478934 LINC00959A0A1B0GUT2 108 aa7.5□□□□□ -1.21
VPS52-217ENST00000478934 C9orf129Q5T035 196 aaKnown RBP7.5□□□□□ -1.21
VPS52-217ENST00000478934 SMCR5Q8TEV8 140 aa7.5□□□□□ -1.21
VPS52-217ENST00000478934 A0A087WYN8 130 aa7.49□□□□□ -1.21
VPS52-217ENST00000478934 CRPP02741 224 aa7.49□□□□□ -1.21
VPS52-217ENST00000478934 HERV-K104P63124 156 aa7.49□□□□□ -1.21
VPS52-217ENST00000478934 CCL18P55774 89 aa7.49□□□□□ -1.21
VPS52-217ENST00000478934 C3orf56Q8N813 242 aa7.49□□□□□ -1.21
VPS52-217ENST00000478934 SMIM11BQ8TCY0 68 aa7.48□□□□□ -1.21
VPS52-217ENST00000478934 IGLV10-54A0A075B6I4 117 aa7.48□□□□□ -1.21
VPS52-217ENST00000478934 PRR3P79522 188 aaKnown RBP7.48□□□□□ -1.21
VPS52-217ENST00000478934 OR13C6PQ8NH95 151 aa7.48□□□□□ -1.21
VPS52-217ENST00000478934 PKD1L1Q8TDX9 2849 aa7.48□□□□□ -1.21
VPS52-217ENST00000478934 A0A087WZ39 114 aa7.48□□□□□ -1.21
VPS52-217ENST00000478934 PAX4O43316 350 aa7.48□□□□□ -1.21
VPS52-217ENST00000478934 SLPIP03973 132 aa7.48□□□□□ -1.21
VPS52-217ENST00000478934 LINC00612Q8N6U2 182 aa7.47□□□□□ -1.21
VPS52-217ENST00000478934 KIR2DL5BQ8NHK3 375 aa7.47□□□□□ -1.21
VPS52-217ENST00000478934 C6orf226Q5I0X4 101 aa7.47□□□□□ -1.21
VPS52-217ENST00000478934 CELA1Q9UNI1 258 aa7.47□□□□□ -1.21
VPS52-217ENST00000478934 DEFB121Q5J5C9 76 aa7.46□□□□□ -1.22
VPS52-217ENST00000478934 GAGE2AQ6NT46 116 aa7.46□□□□□ -1.22
VPS52-217ENST00000478934 COPS9Q8WXC6 57 aa7.46□□□□□ -1.22
VPS52-217ENST00000478934 LINC00269Q8N2A0 174 aa7.46□□□□□ -1.22
VPS52-217ENST00000478934 TRAV13-2A0A0B4J235 113 aa7.45□□□□□ -1.22
VPS52-217ENST00000478934 PRO0255Q9UI72 69 aa7.45□□□□□ -1.22
VPS52-217ENST00000478934 IGHV4-28A0A0C4DH34 117 aa7.45□□□□□ -1.22
VPS52-217ENST00000478934 TRACP01848 142 aa7.45□□□□□ -1.22
VPS52-217ENST00000478934 HTN3P15516 51 aa7.45□□□□□ -1.22
VPS52-217ENST00000478934 RPL28P46779 137 aaKnown RBP7.44□□□□□ -1.22
VPS52-217ENST00000478934 C9orf116Q5BN46 136 aaPredicted RBP7.44□□□□□ -1.22
VPS52-217ENST00000478934 LECT2O14960 151 aa7.44□□□□□ -1.22
VPS52-217ENST00000478934 MALP21145 153 aa7.44□□□□□ -1.22
VPS52-217ENST00000478934 C14orf132Q9NPU4 83 aa7.44□□□□□ -1.22
VPS52-217ENST00000478934 FAM240AA0A1B0GVK7 77 aa7.43□□□□□ -1.22
VPS52-217ENST00000478934 LINC00526Q96FQ7 95 aa7.43□□□□□ -1.22
VPS52-217ENST00000478934 FAM236AA0A1B0GUQ0 79 aa7.43□□□□□ -1.22
VPS52-217ENST00000478934 FAM236BA0A1B0GV22 79 aa7.43□□□□□ -1.22
VPS52-217ENST00000478934 DNAL4O96015 105 aa7.43□□□□□ -1.22
VPS52-217ENST00000478934 ANK2Q01484 3957 aa7.42□□□□□ -1.22
VPS52-217ENST00000478934 NCR3O14931 201 aa7.42□□□□□ -1.22
VPS52-217ENST00000478934 SS18Q15532 418 aa7.42□□□□□ -1.22
VPS52-217ENST00000478934 Q6Q795 121 aa7.42□□□□□ -1.22
VPS52-217ENST00000478934 IBA57-AS1B1ANH7 110 aa7.41□□□□□ -1.22
VPS52-217ENST00000478934 ANGP03950 147 aaKnown RBP7.41□□□□□ -1.22
VPS52-217ENST00000478934 C9orf66Q5T8R8 295 aa7.41□□□□□ -1.22
VPS52-217ENST00000478934 FLNBO75369 2602 aaKnown RBP7.41□□□□□ -1.22
VPS52-217ENST00000478934 A0A1B0GUV1 79 aa7.4□□□□□ -1.22
VPS52-217ENST00000478934 DAD1P61803 113 aa7.4□□□□□ -1.22
VPS52-217ENST00000478934 CHCHD10Q8WYQ3 142 aaPredicted RBP7.4□□□□□ -1.23
VPS52-217ENST00000478934 SMIM9A6NGZ8 99 aa7.39□□□□□ -1.23
VPS52-217ENST00000478934 C6orf223Q8N319 242 aa7.39□□□□□ -1.23
VPS52-217ENST00000478934 Q8NDZ9 215 aa7.39□□□□□ -1.23
VPS52-217ENST00000478934 STAB1Q9NY15 2570 aa7.39□□□□□ -1.23
VPS52-217ENST00000478934 REG3AQ06141 175 aa7.39□□□□□ -1.23
VPS52-217ENST00000478934 Q8NAQ8 132 aa7.39□□□□□ -1.23
VPS52-217ENST00000478934 TENM3Q9P273 2699 aa7.39□□□□□ -1.23
VPS52-217ENST00000478934 TRBV7-7A0A0K0K1E9 115 aa7.38□□□□□ -1.23
VPS52-217ENST00000478934 LYRM9A8MSI8 78 aa7.38□□□□□ -1.23
VPS52-217ENST00000478934 KIAA0087Q14695 138 aa7.38□□□□□ -1.23
VPS52-217ENST00000478934 MRPL23Q16540 153 aaKnown RBP7.37□□□□□ -1.23
VPS52-217ENST00000478934 C10orf25Q5T742 122 aa7.37□□□□□ -1.23
VPS52-217ENST00000478934 SDIM1Q6ZPB5 146 aa7.37□□□□□ -1.23
VPS52-217ENST00000478934 FBN1P35555 2871 aaKnown RBP7.37□□□□□ -1.23
VPS52-217ENST00000478934 IGKV3D-7A0A0C4DH55 119 aa7.37□□□□□ -1.23
VPS52-217ENST00000478934 IGHV4-30-4P0DP06 118 aa7.37□□□□□ -1.23
VPS52-217ENST00000478934 Q8IZM0 81 aa7.37□□□□□ -1.23
VPS52-217ENST00000478934 ACYP1P07311 99 aa7.36□□□□□ -1.23
VPS52-217ENST00000478934 RETNQ9HD89 108 aa7.36□□□□□ -1.23
VPS52-217ENST00000478934 NANOS2P60321 138 aaKnown RBP7.36□□□□□ -1.23
VPS52-217ENST00000478934 CD164L2Q6UWJ8 174 aa7.36□□□□□ -1.23
VPS52-217ENST00000478934 LINC00643Q86TS7 51 aa7.36□□□□□ -1.23
VPS52-217ENST00000478934 APOC4P55056 127 aa7.35□□□□□ -1.23
VPS52-217ENST00000478934 F8P00451 2351 aa7.35□□□□□ -1.23
VPS52-217ENST00000478934 INAFM2P0DMQ5 153 aa7.35□□□□□ -1.23
VPS52-217ENST00000478934 OXLD1Q5BKU9 147 aa7.35□□□□□ -1.23
VPS52-217ENST00000478934 UNQ6190/PRO20217Q6UXQ8 127 aa7.35□□□□□ -1.23
VPS52-217ENST00000478934 LINC00846Q9NV44 126 aa7.35□□□□□ -1.23
VPS52-217ENST00000478934 KLK12Q9UKR0 248 aa7.35□□□□□ -1.23
VPS52-217ENST00000478934 PPDPFQ9H3Y8 114 aa7.34□□□□□ -1.23
VPS52-217ENST00000478934 NOTCH1P46531 2555 aa7.34□□□□□ -1.23
VPS52-217ENST00000478934 MAST4O15021 2626 aa7.34□□□□□ -1.23
VPS52-217ENST00000478934 H0YGX0 51 aa7.34□□□□□ -1.23
VPS52-217ENST00000478934 CFAP161Q6P656 301 aa7.34□□□□□ -1.23
VPS52-217ENST00000478934 A0A087WVE0 104 aa7.33□□□□□ -1.24
VPS52-217ENST00000478934 CXCL5P42830 114 aa7.33□□□□□ -1.24
VPS52-217ENST00000478934 SPART-AS1P0CW21 52 aa7.32□□□□□ -1.24
VPS52-217ENST00000478934 C6orf99Q4VX62 202 aa7.31□□□□□ -1.24
VPS52-217ENST00000478934 KLK5Q9Y337 293 aaPredicted RBP7.31□□□□□ -1.24
VPS52-217ENST00000478934 MIFP14174 115 aa7.31□□□□□ -1.24
VPS52-217ENST00000478934 ENHOQ6UWT2 76 aa7.31□□□□□ -1.24
VPS52-217ENST00000478934 SVIPQ8NHG7 77 aa7.31□□□□□ -1.24
VPS52-217ENST00000478934 ORMDL1Q9P0S3 153 aa7.31□□□□□ -1.24
VPS52-217ENST00000478934 SMIM20Q8N5G0 67 aa7.31□□□□□ -1.24
VPS52-217ENST00000478934 WFDC9Q8NEX5 89 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms