RNA–Protein interactions for RNA: ENST00000478525.1

HPS3-205, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 3

Gene HPS3, Length 601 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-205ENST00000478525 SYNJ1O43426 1573 aa-0.74□□□□□ -2.53
HPS3-205ENST00000478525 MARF1Q9Y4F3 1742 aaKnown RBP-0.75□□□□□ -2.53
HPS3-205ENST00000478525 MTORP42345 2549 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 GNG14A0A1W2PPG7 69 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 NBEAP1P0C6P0 100 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 SEC11AP67812 179 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 C9orf153Q5TBE3 101 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 LZICQ8WZA0 190 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 SNRNP25Q9BV90 132 aaKnown RBP-0.75□□□□□ -2.53
HPS3-205ENST00000478525 SMIM3Q9BZL3 60 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 COL12A1Q99715 3063 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 VPS13BQ7Z7G8 4022 aa-0.75□□□□□ -2.53
HPS3-205ENST00000478525 H3BNG1 76 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 M0R129 80 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 IGLC1P0CG04 106 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 LINC00694P0DN24 101 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 DEFA5Q01523 94 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 C8orf59Q8N0T1 100 aaPredicted RBP-0.76□□□□□ -2.53
HPS3-205ENST00000478525 PYDC1Q8WXC3 89 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 LINC01600Q96MT4 127 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 RERGLQ9H628 205 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 CDC42SE2Q9NRR3 84 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 LINC00846Q9NV44 126 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 PAIP2BQ9ULR5 123 aaKnown RBP-0.76□□□□□ -2.53
HPS3-205ENST00000478525 FHAD1B1AJZ9 1412 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 ANKRD50Q9ULJ7 1429 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 NKTRP30414 1462 aaKnown RBP-0.76□□□□□ -2.53
HPS3-205ENST00000478525 NLRP1Q9C000 1473 aa-0.76□□□□□ -2.53
HPS3-205ENST00000478525 DNAH1Q9P2D7 4330 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 NBEAQ8NFP9 2946 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 USP9XQ93008 2570 aaPredicted RBP-0.77□□□□□ -2.53
HPS3-205ENST00000478525 MGAM2Q2M2H8 2515 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 RIF1Q5UIP0 2472 aaKnown RBP-0.77□□□□□ -2.53
HPS3-205ENST00000478525 DNAH11Q96DT5 4516 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 C1orf167Q5SNV9 1468 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 CLIP1P30622 1438 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 TROQ12816 1431 aaPredicted RBP-0.77□□□□□ -2.53
HPS3-205ENST00000478525 NAIPQ13075 1403 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 EDC4Q6P2E9 1401 aaKnown RBP-0.77□□□□□ -2.53
HPS3-205ENST00000478525 A0A1B0GWA3 101 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 F6UZH7 168 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 K7EP34 96 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 COX6CP09669 75 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 SAA2P0DJI9 122 aaPredicted RBP-0.77□□□□□ -2.53
HPS3-205ENST00000478525 CKS1BP61024 79 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 SPANXDQ9BXN6 97 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 HIGD1BQ9P298 99 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 SERP1Q9Y6X1 66 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 AKAP13Q12802 2813 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 LRRK2Q5S007 2527 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 ZFHX3Q15911 3703 aa-0.77□□□□□ -2.53
HPS3-205ENST00000478525 CICQ96RK0 1608 aaPredicted RBP-0.78□□□□□ -2.53
HPS3-205ENST00000478525 DIP2CQ9Y2E4 1556 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 SNCAP37840 140 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 NMSQ5H8A3 153 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 HEPN1Q6WQI6 88 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 COMMD6Q7Z4G1 85 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 DPH3Q96FX2 82 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 PDCD10Q9BUL8 212 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 PSENENQ9NZ42 101 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 ARL2-SNX15V9GYD0 113 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 TRANK1O15050 2925 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 ANK3Q12955 4377 aaKnown RBP-0.78□□□□□ -2.53
HPS3-205ENST00000478525 DMXL1Q9Y485 3027 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 TET3O43151 1660 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 CUBNO60494 3623 aa-0.78□□□□□ -2.53
HPS3-205ENST00000478525 DNHD1Q96M86 4753 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 GRIN2AQ12879 1464 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 MRC2Q9UBG0 1479 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 CPSF1Q10570 1443 aaKnown RBP-0.79□□□□□ -2.54
HPS3-205ENST00000478525 UBR3Q6ZT12 1888 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 A0A1B0GU69 56 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 CHKB-CPT1BH3BT56 60 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 TRAPPC2P0DI81 140 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 TRAPPC2BP0DI82 140 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 RPS25P62851 125 aaKnown RBP-0.79□□□□□ -2.54
HPS3-205ENST00000478525 MT1HP80294 61 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 SMIM21Q3B7S5 101 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 Q56UQ5 140 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 C5orf38Q86SI9 138 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 C1orf54Q8WWF1 131 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 PP6455Q8WZ26 134 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 VAMP8Q9BV40 100 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 KNDC1Q76NI1 1749 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 CCDC168Q8NDH2 2452 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 MAPKBP1O60336 1514 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 EHBP1L1Q8N3D4 1523 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 NBEAL2Q6ZNJ1 2754 aa-0.79□□□□□ -2.54
HPS3-205ENST00000478525 RGPD8O14715 1765 aaPredicted RBP-0.8□□□□□ -2.54
HPS3-205ENST00000478525 RGPD5Q99666 1765 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 PHLPP1O60346 1717 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 TEX15Q9BXT5 2789 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 APOC2P02655 101 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 ATP5EP56381 51 aaPredicted RBP-0.8□□□□□ -2.54
HPS3-205ENST00000478525 FAM223AQ8IWN6 122 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 TSTD1Q8NFU3 115 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 C12orf57Q99622 126 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 MRPL34Q9BQ48 92 aaKnown RBP-0.8□□□□□ -2.54
HPS3-205ENST00000478525 PLEKHH2Q8IVE3 1493 aa-0.8□□□□□ -2.54
HPS3-205ENST00000478525 ARHGEF5Q12774 1597 aa-0.81□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms