RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 I3L3M4 83 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 ARMS2P0C7Q2 107 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 HMGA1P17096 107 aaKnown RBP0.19□□□□□ -2.38
VPS50-212ENST00000476413 ASIPP42127 132 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 DEFB123Q8N688 67 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 PSENENQ9NZ42 101 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 UNC79Q9P2D8 2635 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 HIVEP3Q5T1R4 2406 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 PSME4Q14997 1843 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 STAB2Q8WWQ8 2551 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 CHD8Q9HCK8 2581 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 DCHS2Q6V1P9 2916 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 ANKHD1Q8IWZ3 2542 aaKnown RBP0.19□□□□□ -2.38
VPS50-212ENST00000476413 DOPEY1Q5JWR5 2465 aa0.19□□□□□ -2.38
VPS50-212ENST00000476413 HMGXB3Q12766 1538 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 ARHGEF12Q9NZN5 1544 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 RIMS1Q86UR5 1692 aaKnown RBP0.18□□□□□ -2.38
VPS50-212ENST00000476413 FAM186AA6NE01 2351 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 BTAF1O14981 1849 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 GAPVD1Q14C86 1478 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 MAGI1Q96QZ7 1491 aaPredicted RBP0.18□□□□□ -2.38
VPS50-212ENST00000476413 D6R8Y8 96 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 H0Y9P7 68 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 K7EQZ3 153 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 LEPROTL1O95214 131 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 GYPAP02724 150 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 SPRR1BP22528 89 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 C6orf201Q7Z4U5 140 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 MUSTN1Q8IVN3 82 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 ATRQ13535 2644 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 RGPD3A6NKT7 1758 aaPredicted RBP0.18□□□□□ -2.38
VPS50-212ENST00000476413 PPLO60437 1756 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 RGPD4Q7Z3J3 1758 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 NSD3Q9BZ95 1437 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 FLNCQ14315 2725 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 HRNRQ86YZ3 2850 aaPredicted RBP0.18□□□□□ -2.38
VPS50-212ENST00000476413 SETXQ7Z333 2677 aaKnown RBP0.18□□□□□ -2.38
VPS50-212ENST00000476413 KIF21AQ7Z4S6 1674 aa0.18□□□□□ -2.38
VPS50-212ENST00000476413 CHD6Q8TD26 2715 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 CHD9Q3L8U1 2897 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 BIVM-ERCC5R4GMW8 1640 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 A0A087WVE0 104 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 LINC00959A0A1B0GUT2 108 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 CPSF4LA6NMK7 179 aaKnown RBP0.17□□□□□ -2.38
VPS50-212ENST00000476413 ABCC5O15440 1437 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 MT-ATP8P03928 68 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 PKIAP61925 76 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 ETDBQ3ZM63 59 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 NCMAPQ5T1S8 102 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 DEFB107AQ8IZN7 70 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 DEFB105AQ8NG35 78 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 LCN9Q8WX39 176 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 CNTLNQ9NXG0 1405 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 SPTBN4Q9H254 2564 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 SONP18583 2426 aaKnown RBP0.17□□□□□ -2.38
VPS50-212ENST00000476413 EP300Q09472 2414 aaPredicted RBP0.17□□□□□ -2.38
VPS50-212ENST00000476413 ZNF236Q9UL36 1845 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 AKAP12Q02952 1782 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 KDM3BQ7LBC6 1761 aa0.17□□□□□ -2.38
VPS50-212ENST00000476413 ADGRL2O95490 1459 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 MLH3Q9UHC1 1453 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 ZANQ9Y493 2812 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 FLNBO75369 2602 aaKnown RBP0.16□□□□□ -2.38
VPS50-212ENST00000476413 KDM5AP29375 1690 aaKnown RBP0.16□□□□□ -2.38
VPS50-212ENST00000476413 MYOM1P52179 1685 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 SPTAN1Q13813 2472 aaKnown RBP0.16□□□□□ -2.38
VPS50-212ENST00000476413 ABCC2Q92887 1545 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 USP9YO00507 2555 aaPredicted RBP0.16□□□□□ -2.38
VPS50-212ENST00000476413 NBEAL1Q6ZS30 2694 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 FASNP49327 2511 aaKnown RBP0.16□□□□□ -2.38
VPS50-212ENST00000476413 C1orf167Q5SNV9 1468 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 TEX14Q8IWB6 1497 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 FYCO1Q9BQS8 1478 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 PKD1L3Q7Z443 1732 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 ABCA3Q99758 1704 aa0.16□□□□□ -2.38
VPS50-212ENST00000476413 QRICH2Q9H0J4 1663 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 SPTY2D1-AS1A0A0U1RR47 76 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 H7BZZ5 65 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 RPL38P63173 70 aaKnown RBP0.15□□□□□ -2.39
VPS50-212ENST00000476413 PEA15Q15121 130 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 SPRR2GQ9BYE4 73 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 UBR3Q6ZT12 1888 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 ANKRD36BQ8N2N9 1353 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 NUP188Q5SRE5 1749 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 MON2Q7Z3U7 1717 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 NSD1Q96L73 2696 aaPredicted RBP0.15□□□□□ -2.39
VPS50-212ENST00000476413 IQSEC2Q5JU85 1478 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 RAPGEF2Q9Y4G8 1499 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 DIP2CQ9Y2E4 1556 aa0.15□□□□□ -2.39
VPS50-212ENST00000476413 CUL7Q14999 1698 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 BCORQ6W2J9 1755 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 MYO18BQ8IUG5 2567 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 ZZEF1O43149 2961 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 HECTD1Q9ULT8 2610 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 TRBV7-7A0A0K0K1E9 115 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 CCL22O00626 93 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 CYB5AP00167 134 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 APLNQ9ULZ1 77 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 MRC2Q9UBG0 1479 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 TET3O43151 1660 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms