RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 A0A096LNJ9 63 aa13.1□□□□□ -0.31
LIME1-204ENST00000476183 MT1HL1P0DM35 61 aa13.1□□□□□ -0.31
LIME1-204ENST00000476183 PHF5AQ7RTV0 110 aaKnown RBP13.1□□□□□ -0.31
LIME1-204ENST00000476183 CST9LQ9H4G1 147 aa13.1□□□□□ -0.31
LIME1-204ENST00000476183 PRSS2P07478 247 aa13.09□□□□□ -0.31
LIME1-204ENST00000476183 Q8IZM0 81 aa13.09□□□□□ -0.31
LIME1-204ENST00000476183 PACRGQ96M98 296 aaPredicted RBP13.09□□□□□ -0.31
LIME1-204ENST00000476183 YPEL4Q96NS1 127 aa13.09□□□□□ -0.31
LIME1-204ENST00000476183 TINCRA0A1B0GVN0 87 aa13.08□□□□□ -0.32
LIME1-204ENST00000476183 C6orf226Q5I0X4 101 aa13.08□□□□□ -0.32
LIME1-204ENST00000476183 LINC00469Q8N7U9 141 aa13.08□□□□□ -0.32
LIME1-204ENST00000476183 NDUFC2-KCTD14E9PQ53 114 aa13.07□□□□□ -0.32
LIME1-204ENST00000476183 KRTAP7-1Q8IUC3 87 aa13.07□□□□□ -0.32
LIME1-204ENST00000476183 IGLV5-45A0A087WSX0 123 aa13.06□□□□□ -0.32
LIME1-204ENST00000476183 SMIM1B2RUZ4 78 aa13.06□□□□□ -0.32
LIME1-204ENST00000476183 LINC00614P0C842 121 aa13.06□□□□□ -0.32
LIME1-204ENST00000476183 CKS1BP61024 79 aa13.06□□□□□ -0.32
LIME1-204ENST00000476183 PMVKQ15126 192 aa13.06□□□□□ -0.32
LIME1-204ENST00000476183 PSORS1C2Q9UIG4 136 aa13.06□□□□□ -0.32
LIME1-204ENST00000476183 HMCN2Q8NDA2 5059 aa13.06□□□□□ -0.32
LIME1-204ENST00000476183 SRSF9Q13242 221 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIME1-204ENST00000476183 FAM19A5Q7Z5A7 132 aaPredicted RBP13.05□□□□□ -0.32
LIME1-204ENST00000476183 PMCHL1Q16048 86 aa13.04□□□□□ -0.32
LIME1-204ENST00000476183 C9orf129Q5T035 196 aaKnown RBP13.04□□□□□ -0.32
LIME1-204ENST00000476183 SPINK6Q6UWN8 80 aa13.03□□□□□ -0.32
LIME1-204ENST00000476183 KRTAP11-1Q8IUC1 163 aa13.03□□□□□ -0.32
LIME1-204ENST00000476183 PDZD11Q5EBL8 140 aa13.02□□□□□ -0.33
LIME1-204ENST00000476183 F8VRH5 84 aa13.01□□□□□ -0.33
LIME1-204ENST00000476183 HBDP02042 147 aa13.01□□□□□ -0.33
LIME1-204ENST00000476183 SPINK8P0C7L1 97 aa13□□□□□ -0.33
LIME1-204ENST00000476183 CBLN2Q8IUK8 224 aa13□□□□□ -0.33
LIME1-204ENST00000476183 COX7B2Q8TF08 81 aa13□□□□□ -0.33
LIME1-204ENST00000476183 IGLC3P0DOY3 106 aa12.99□□□□□ -0.33
LIME1-204ENST00000476183 C1orf137Q5JT78 98 aa12.99□□□□□ -0.33
LIME1-204ENST00000476183 CXCL5P42830 114 aa12.98□□□□□ -0.33
LIME1-204ENST00000476183 NDUFA6P56556 154 aa12.98□□□□□ -0.33
LIME1-204ENST00000476183 SERTAD4-AS1Q5TG53 156 aa12.98□□□□□ -0.33
LIME1-204ENST00000476183 LINC01600Q96MT4 127 aa12.98□□□□□ -0.33
LIME1-204ENST00000476183 M0QXV9 152 aa12.97□□□□□ -0.33
LIME1-204ENST00000476183 RAB5BP61020 215 aa12.97□□□□□ -0.33
LIME1-204ENST00000476183 SLC7A5P1Q8MH63 180 aa12.96□□□□□ -0.33
LIME1-204ENST00000476183 XAGE1AQ9HD64 81 aa12.96□□□□□ -0.33
LIME1-204ENST00000476183 H3BRM9 83 aa12.94□□□□□ -0.34
LIME1-204ENST00000476183 ZNF22P17026 224 aaPredicted RBP12.94□□□□□ -0.34
LIME1-204ENST00000476183 ATP5LO75964 103 aa12.93□□□□□ -0.34
LIME1-204ENST00000476183 REG3GQ6UW15 175 aa12.93□□□□□ -0.34
LIME1-204ENST00000476183 IGLV5-39A0A0G2JS06 123 aa12.92□□□□□ -0.34
LIME1-204ENST00000476183 IGLV7-43P04211 117 aa12.92□□□□□ -0.34
LIME1-204ENST00000476183 BAGE3Q86Y29 109 aa12.92□□□□□ -0.34
LIME1-204ENST00000476183 UBE2BP63146 152 aa12.91□□□□□ -0.34
LIME1-204ENST00000476183 CHCHD1Q96BP2 118 aaKnown RBP12.91□□□□□ -0.34
LIME1-204ENST00000476183 C11orf86A6NJI1 115 aa12.9□□□□□ -0.34
LIME1-204ENST00000476183 C22orf24Q9Y442 160 aa12.9□□□□□ -0.34
LIME1-204ENST00000476183 KRTAP10-8P60410 259 aa12.89□□□□□ -0.35
LIME1-204ENST00000476183 ODF1Q14990 250 aa12.88□□□□□ -0.35
LIME1-204ENST00000476183 TRGC2P03986 189 aa12.87□□□□□ -0.35
LIME1-204ENST00000476183 PLA2G2DQ9UNK4 145 aa12.87□□□□□ -0.35
LIME1-204ENST00000476183 IFI27L1Q96BM0 104 aa12.85□□□□□ -0.35
LIME1-204ENST00000476183 CHTOPQ9Y3Y2 248 aaKnown RBP12.85□□□□□ -0.35
LIME1-204ENST00000476183 TMEM170BQ5T4T1 132 aa12.84□□□□□ -0.35
LIME1-204ENST00000476183 FAM19A2Q8N3H0 131 aa12.84□□□□□ -0.35
LIME1-204ENST00000476183 DIRC1Q969H9 104 aa12.83□□□□□ -0.36
LIME1-204ENST00000476183 TP73-AS1Q9UF72 201 aa12.83□□□□□ -0.36
LIME1-204ENST00000476183 TRAV12-1A0A0B4J245 112 aa12.82□□□□□ -0.36
LIME1-204ENST00000476183 LINC00310P59036 64 aa12.82□□□□□ -0.36
LIME1-204ENST00000476183 LBHQ53QV2 105 aaPredicted RBP12.82□□□□□ -0.36
LIME1-204ENST00000476183 MRPL55Q7Z7F7 128 aaKnown RBP12.82□□□□□ -0.36
LIME1-204ENST00000476183 H0Y9J4 135 aa12.81□□□□□ -0.36
LIME1-204ENST00000476183 HSBP1O75506 76 aa12.81□□□□□ -0.36
LIME1-204ENST00000476183 PFN2P35080 140 aa12.81□□□□□ -0.36
LIME1-204ENST00000476183 COLCA2A8K830 154 aa12.8□□□□□ -0.36
LIME1-204ENST00000476183 ZNF625Q96I27 306 aaPredicted RBP12.79□□□□□ -0.36
LIME1-204ENST00000476183 TMEM223A0PJW6 202 aa12.78□□□□□ -0.36
LIME1-204ENST00000476183 SERF1AO75920 110 aa12.78□□□□□ -0.36
LIME1-204ENST00000476183 LINC00167Q96N53 147 aa12.78□□□□□ -0.36
LIME1-204ENST00000476183 ERG28Q9UKR5 140 aa12.78□□□□□ -0.36
LIME1-204ENST00000476183 IGLV5-37A0A075B6J1 123 aa12.77□□□□□ -0.37
LIME1-204ENST00000476183 UBR4Q5T4S7 5183 aa12.76□□□□□ -0.37
LIME1-204ENST00000476183 GAGE10A6NGK3 116 aa12.76□□□□□ -0.37
LIME1-204ENST00000476183 RPL37AP8A6NKH3 93 aa12.76□□□□□ -0.37
LIME1-204ENST00000476183 NUPR1O60356 82 aa12.76□□□□□ -0.37
LIME1-204ENST00000476183 KRTAP1-4P0C5Y4 121 aa12.75□□□□□ -0.37
LIME1-204ENST00000476183 SND1-IT1Q9HBX3 110 aa12.75□□□□□ -0.37
LIME1-204ENST00000476183 ZNF861PO60384 105 aa12.74□□□□□ -0.37
LIME1-204ENST00000476183 SCO1O75880 301 aa12.74□□□□□ -0.37
LIME1-204ENST00000476183 PRR26Q8N8Z3 221 aa12.74□□□□□ -0.37
LIME1-204ENST00000476183 COX17Q14061 63 aa12.73□□□□□ -0.37
LIME1-204ENST00000476183 H0Y8G0 127 aa12.72□□□□□ -0.37
LIME1-204ENST00000476183 LEPROTL1O95214 131 aa12.72□□□□□ -0.37
LIME1-204ENST00000476183 SFTA2Q6UW10 78 aa12.72□□□□□ -0.37
LIME1-204ENST00000476183 NKAPP1Q8N9T2 125 aa12.72□□□□□ -0.37
LIME1-204ENST00000476183 BCE1O60756 84 aa12.71□□□□□ -0.37
LIME1-204ENST00000476183 VPREB1P12018 145 aa12.71□□□□□ -0.37
LIME1-204ENST00000476183 Q8NDZ9 215 aa12.71□□□□□ -0.37
LIME1-204ENST00000476183 LRP2P98164 4655 aa12.69□□□□□ -0.38
LIME1-204ENST00000476183 FABP4P15090 132 aa12.67□□□□□ -0.38
LIME1-204ENST00000476183 LINC00158P58513 81 aa12.67□□□□□ -0.38
LIME1-204ENST00000476183 IGKV2-28A0A075B6P5 120 aa12.66□□□□□ -0.38
LIME1-204ENST00000476183 A0A0U1RRA0 63 aa12.66□□□□□ -0.38
LIME1-204ENST00000476183 IGKV2D-28P01615 120 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms