RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 DEFB105AQ8NG35 78 aa-0.42□□□□□ -2.48
CCDC88A-212ENST00000474059 MUC2Q02817 5179 aa-0.42□□□□□ -2.48
CCDC88A-212ENST00000474059 PDCD11Q14690 1871 aaKnown RBP-0.42□□□□□ -2.48
CCDC88A-212ENST00000474059 CSPG4Q6UVK1 2322 aa-0.42□□□□□ -2.48
CCDC88A-212ENST00000474059 hADV29S1A0JD25 119 aa-0.43□□□□□ -2.48
CCDC88A-212ENST00000474059 KRTDAPP60985 99 aa-0.43□□□□□ -2.48
CCDC88A-212ENST00000474059 GTF2H5Q6ZYL4 71 aa-0.43□□□□□ -2.48
CCDC88A-212ENST00000474059 LINC00846Q9NV44 126 aa-0.43□□□□□ -2.48
CCDC88A-212ENST00000474059 PAPPA2Q9BXP8 1791 aa-0.43□□□□□ -2.48
CCDC88A-212ENST00000474059 DCHS2Q6V1P9 2916 aa-0.43□□□□□ -2.48
CCDC88A-212ENST00000474059 ZANQ9Y493 2812 aa-0.43□□□□□ -2.48
CCDC88A-212ENST00000474059 STAB1Q9NY15 2570 aa-0.44□□□□□ -2.48
CCDC88A-212ENST00000474059 MARF1Q9Y4F3 1742 aaKnown RBP-0.44□□□□□ -2.48
CCDC88A-212ENST00000474059 A0A087WVE0 104 aa-0.44□□□□□ -2.48
CCDC88A-212ENST00000474059 COX8AP10176 69 aa-0.44□□□□□ -2.48
CCDC88A-212ENST00000474059 SEC11AP67812 179 aa-0.44□□□□□ -2.48
CCDC88A-212ENST00000474059 USMG5Q96IX5 58 aa-0.44□□□□□ -2.48
CCDC88A-212ENST00000474059 ABCC5O15440 1437 aa-0.45□□□□□ -2.48
CCDC88A-212ENST00000474059 LRP1BQ9NZR2 4599 aa-0.45□□□□□ -2.48
CCDC88A-212ENST00000474059 TMEM262E9PQX1 116 aa-0.45□□□□□ -2.48
CCDC88A-212ENST00000474059 HSD52Q0P140 79 aa-0.45□□□□□ -2.48
CCDC88A-212ENST00000474059 GVINP1Q7Z2Y8 2422 aa-0.45□□□□□ -2.48
CCDC88A-212ENST00000474059 IQSEC2Q5JU85 1478 aa-0.46□□□□□ -2.48
CCDC88A-212ENST00000474059 ZFYVE16Q7Z3T8 1539 aa-0.46□□□□□ -2.48
CCDC88A-212ENST00000474059 CGREF1Q99674 301 aa-0.46□□□□□ -2.48
CCDC88A-212ENST00000474059 KNDC1Q76NI1 1749 aa-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 COL6A3P12111 3177 aa-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 GOLGA4Q13439 2230 aaKnown RBP-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 A0A1B0GU69 56 aa-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 C20orf202A1L168 122 aa-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 M0R2T5 61 aa-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 TARBP1Q13395 1621 aaKnown RBP-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 FLNAP21333 2647 aaKnown RBP-0.47□□□□□ -2.48
CCDC88A-212ENST00000474059 PRKDCP78527 4128 aaKnown RBP-0.48□□□□□ -2.49
CCDC88A-212ENST00000474059 C7orf77A4D0Y5 90 aa-0.48□□□□□ -2.49
CCDC88A-212ENST00000474059 ASIPP42127 132 aa-0.48□□□□□ -2.49
CCDC88A-212ENST00000474059 APLNQ9ULZ1 77 aa-0.48□□□□□ -2.49
CCDC88A-212ENST00000474059 NCOA3Q9Y6Q9 1424 aa-0.48□□□□□ -2.49
CCDC88A-212ENST00000474059 A0A0G2JND7 137 aa-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 CPSF4LA6NMK7 179 aaKnown RBP-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 C6orf201Q7Z4U5 140 aa-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 VAMP8Q9BV40 100 aa-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 CACFD1Q9UGQ2 172 aa-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 EDC4Q6P2E9 1401 aaKnown RBP-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 NKTRP30414 1462 aaKnown RBP-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 CCDC141Q6ZP82 1450 aa-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 EP300Q09472 2414 aaPredicted RBP-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 SHPRHQ149N8 1683 aa-0.49□□□□□ -2.49
CCDC88A-212ENST00000474059 KRTAP19-7Q3SYF9 63 aa-0.5□□□□□ -2.49
CCDC88A-212ENST00000474059 CRIPTQ9P021 101 aa-0.5□□□□□ -2.49
CCDC88A-212ENST00000474059 MLH3Q9UHC1 1453 aa-0.5□□□□□ -2.49
CCDC88A-212ENST00000474059 ATRQ13535 2644 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 H3BQF6 201 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 GNGT2O14610 69 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 SLIT1O75093 1534 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 PRDM15P57071 1507 aaPredicted RBP-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 PSMG4Q5JS54 123 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 DEFB107AQ8IZN7 70 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 KIAA1551Q9HCM1 1747 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 TENM2Q9NT68 2774 aa-0.51□□□□□ -2.49
CCDC88A-212ENST00000474059 ANKRD36A6QL64 1941 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 LRRC37AA6NMS7 1700 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 MON2Q7Z3U7 1717 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 SRRM2Q9UQ35 2752 aaKnown RBP-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 TRBV25-1A0A075B6N4 114 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 H0Y9P7 68 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 NDUFC1O43677 76 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 PMCHL1Q16048 86 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 WNK1Q9H4A3 2382 aa-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 URB1O60287 2271 aaKnown RBP-0.52□□□□□ -2.49
CCDC88A-212ENST00000474059 PEG3Q9GZU2 1588 aa-0.53□□□□□ -2.49
CCDC88A-212ENST00000474059 C5P01031 1676 aa-0.53□□□□□ -2.49
CCDC88A-212ENST00000474059 MAP1BP46821 2468 aaKnown RBP-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 APC2O95996 2303 aa-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 H7BZZ5 65 aa-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 GNGT1P63211 74 aa-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 H1FX-AS1Q4G0G2 97 aa-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 PMCHL2Q9BQD1 86 aa-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 SPTA1P02549 2419 aa-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 CUX1P39880 1505 aa-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 FLNBO75369 2602 aaKnown RBP-0.54□□□□□ -2.5
CCDC88A-212ENST00000474059 ANKRD36BQ8N2N9 1353 aa-0.55□□□□□ -2.5
CCDC88A-212ENST00000474059 TMEM218A2RU14 115 aa-0.55□□□□□ -2.5
CCDC88A-212ENST00000474059 I3L3M4 83 aa-0.55□□□□□ -2.5
CCDC88A-212ENST00000474059 MT-ATP8P03928 68 aa-0.55□□□□□ -2.5
CCDC88A-212ENST00000474059 S100PP25815 95 aa-0.55□□□□□ -2.5
CCDC88A-212ENST00000474059 TRGV9Q99603 122 aa-0.55□□□□□ -2.5
CCDC88A-212ENST00000474059 SETXQ7Z333 2677 aaKnown RBP-0.55□□□□□ -2.5
CCDC88A-212ENST00000474059 UQCRHP07919 91 aa-0.56□□□□□ -2.5
CCDC88A-212ENST00000474059 S100A10P60903 97 aa-0.56□□□□□ -2.5
CCDC88A-212ENST00000474059 C14orf144Q96I85 54 aa-0.56□□□□□ -2.5
CCDC88A-212ENST00000474059 COL14A1Q05707 1796 aaKnown RBP-0.56□□□□□ -2.5
CCDC88A-212ENST00000474059 RAPGEF2Q9Y4G8 1499 aa-0.56□□□□□ -2.5
CCDC88A-212ENST00000474059 DNAJC13O75165 2243 aa-0.57□□□□□ -2.5
CCDC88A-212ENST00000474059 ABCC2Q92887 1545 aa-0.57□□□□□ -2.5
CCDC88A-212ENST00000474059 TRAV30A0A087WSZ9 112 aa-0.57□□□□□ -2.5
CCDC88A-212ENST00000474059 MPC2O95563 127 aa-0.57□□□□□ -2.5
CCDC88A-212ENST00000474059 DEFB135Q30KP9 77 aa-0.57□□□□□ -2.5
CCDC88A-212ENST00000474059 AP4S1Q9Y587 144 aa-0.57□□□□□ -2.5
CCDC88A-212ENST00000474059 NRXN1Q9ULB1 1477 aa-0.57□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms