RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 Q8IZM0 81 aa11.07□□□□□ -0.64
UPF3A-203ENST00000474056 GEMIN7Q9H840 131 aaKnown RBP11.07□□□□□ -0.64
UPF3A-203ENST00000474056 PSORS1C2Q9UIG4 136 aa11.07□□□□□ -0.64
UPF3A-203ENST00000474056 SRSF9Q13242 221 aaKnown RBP eCLIP11.06□□□□□ -0.64
UPF3A-203ENST00000474056 SPINK6Q6UWN8 80 aa11.06□□□□□ -0.64
UPF3A-203ENST00000474056 FAM19A5Q7Z5A7 132 aaPredicted RBP11.06□□□□□ -0.64
UPF3A-203ENST00000474056 SMCO4Q9NRQ5 59 aa11.06□□□□□ -0.64
UPF3A-203ENST00000474056 LINC01549A6NIU2 74 aa11.05□□□□□ -0.64
UPF3A-203ENST00000474056 NDUFC2-KCTD14E9PQ53 114 aa11.05□□□□□ -0.64
UPF3A-203ENST00000474056 KRTAP7-1Q8IUC3 87 aa11.05□□□□□ -0.64
UPF3A-203ENST00000474056 TRAPPC1Q9Y5R8 145 aa11.05□□□□□ -0.64
UPF3A-203ENST00000474056 SNAPINO95295 136 aa11.04□□□□□ -0.64
UPF3A-203ENST00000474056 CKS1BP61024 79 aa11.04□□□□□ -0.64
UPF3A-203ENST00000474056 C6orf226Q5I0X4 101 aa11.04□□□□□ -0.64
UPF3A-203ENST00000474056 LINC00469Q8N7U9 141 aa11.04□□□□□ -0.64
UPF3A-203ENST00000474056 URB1-AS1Q96HZ7 61 aa11.04□□□□□ -0.64
UPF3A-203ENST00000474056 TINCRA0A1B0GVN0 87 aa11.03□□□□□ -0.64
UPF3A-203ENST00000474056 C9orf129Q5T035 196 aaKnown RBP11.03□□□□□ -0.64
UPF3A-203ENST00000474056 SVBPQ8N300 66 aa11.03□□□□□ -0.64
UPF3A-203ENST00000474056 C18orf32Q8TCD1 76 aa11.03□□□□□ -0.64
UPF3A-203ENST00000474056 LINC01600Q96MT4 127 aa11.03□□□□□ -0.64
UPF3A-203ENST00000474056 A0A096LNJ9 63 aa11.02□□□□□ -0.65
UPF3A-203ENST00000474056 SMIM1B2RUZ4 78 aa11.02□□□□□ -0.65
UPF3A-203ENST00000474056 NDUFA5Q16718 116 aa11.02□□□□□ -0.65
UPF3A-203ENST00000474056 C1orf137Q5JT78 98 aa11.02□□□□□ -0.65
UPF3A-203ENST00000474056 KRTAP11-1Q8IUC1 163 aa11.02□□□□□ -0.65
UPF3A-203ENST00000474056 CST9LQ9H4G1 147 aa11.02□□□□□ -0.65
UPF3A-203ENST00000474056 IGLV5-45A0A087WSX0 123 aa11.01□□□□□ -0.65
UPF3A-203ENST00000474056 PMVKQ15126 192 aa11.01□□□□□ -0.65
UPF3A-203ENST00000474056 M0QXV9 152 aa11□□□□□ -0.65
UPF3A-203ENST00000474056 REG3GQ6UW15 175 aa11□□□□□ -0.65
UPF3A-203ENST00000474056 F8VRH5 84 aa10.99□□□□□ -0.65
UPF3A-203ENST00000474056 PLA2G2DQ9UNK4 145 aa10.99□□□□□ -0.65
UPF3A-203ENST00000474056 SPINK8P0C7L1 97 aa10.98□□□□□ -0.65
UPF3A-203ENST00000474056 LINC00614P0C842 121 aa10.98□□□□□ -0.65
UPF3A-203ENST00000474056 CXCL5P42830 114 aa10.98□□□□□ -0.65
UPF3A-203ENST00000474056 PDZD11Q5EBL8 140 aa10.98□□□□□ -0.65
UPF3A-203ENST00000474056 COX7B2Q8TF08 81 aa10.98□□□□□ -0.65
UPF3A-203ENST00000474056 PMCHL1Q16048 86 aa10.97□□□□□ -0.65
UPF3A-203ENST00000474056 HBDP02042 147 aa10.96□□□□□ -0.65
UPF3A-203ENST00000474056 YPEL4Q96NS1 127 aa10.96□□□□□ -0.65
UPF3A-203ENST00000474056 XAGE1AQ9HD64 81 aa10.96□□□□□ -0.65
UPF3A-203ENST00000474056 IGLV7-43P04211 117 aa10.95□□□□□ -0.66
UPF3A-203ENST00000474056 UBE2BP63146 152 aa10.95□□□□□ -0.66
UPF3A-203ENST00000474056 ODF1Q14990 250 aa10.95□□□□□ -0.66
UPF3A-203ENST00000474056 IGLC3P0DOY3 106 aa10.94□□□□□ -0.66
UPF3A-203ENST00000474056 NDUFA6P56556 154 aa10.94□□□□□ -0.66
UPF3A-203ENST00000474056 KRTAP10-8P60410 259 aa10.93□□□□□ -0.66
UPF3A-203ENST00000474056 H3BRM9 83 aa10.92□□□□□ -0.66
UPF3A-203ENST00000474056 RAB5BP61020 215 aa10.92□□□□□ -0.66
UPF3A-203ENST00000474056 ZNF22P17026 224 aaPredicted RBP10.91□□□□□ -0.66
UPF3A-203ENST00000474056 C22orf24Q9Y442 160 aa10.91□□□□□ -0.66
UPF3A-203ENST00000474056 CBLN2Q8IUK8 224 aa10.9□□□□□ -0.66
UPF3A-203ENST00000474056 ATP5LO75964 103 aa10.89□□□□□ -0.67
UPF3A-203ENST00000474056 UBR4Q5T4S7 5183 aa10.89□□□□□ -0.67
UPF3A-203ENST00000474056 IGLV5-39A0A0G2JS06 123 aa10.88□□□□□ -0.67
UPF3A-203ENST00000474056 BAGE3Q86Y29 109 aa10.88□□□□□ -0.67
UPF3A-203ENST00000474056 DIRC1Q969H9 104 aa10.88□□□□□ -0.67
UPF3A-203ENST00000474056 C11orf86A6NJI1 115 aa10.87□□□□□ -0.67
UPF3A-203ENST00000474056 H0Y9J4 135 aa10.87□□□□□ -0.67
UPF3A-203ENST00000474056 MRPL55Q7Z7F7 128 aaKnown RBP10.85□□□□□ -0.67
UPF3A-203ENST00000474056 CHCHD1Q96BP2 118 aaKnown RBP10.85□□□□□ -0.67
UPF3A-203ENST00000474056 TP73-AS1Q9UF72 201 aa10.85□□□□□ -0.67
UPF3A-203ENST00000474056 LBHQ53QV2 105 aaPredicted RBP10.84□□□□□ -0.67
UPF3A-203ENST00000474056 TMEM170BQ5T4T1 132 aa10.83□□□□□ -0.68
UPF3A-203ENST00000474056 CHTOPQ9Y3Y2 248 aaKnown RBP10.83□□□□□ -0.68
UPF3A-203ENST00000474056 NUPR1O60356 82 aa10.82□□□□□ -0.68
UPF3A-203ENST00000474056 PFN2P35080 140 aa10.82□□□□□ -0.68
UPF3A-203ENST00000474056 SLC7A5P1Q8MH63 180 aa10.82□□□□□ -0.68
UPF3A-203ENST00000474056 PRR26Q8N8Z3 221 aa10.82□□□□□ -0.68
UPF3A-203ENST00000474056 IFI27L1Q96BM0 104 aa10.82□□□□□ -0.68
UPF3A-203ENST00000474056 LRP2P98164 4655 aa10.82□□□□□ -0.68
UPF3A-203ENST00000474056 KRTAP1-4P0C5Y4 121 aa10.81□□□□□ -0.68
UPF3A-203ENST00000474056 LINC00167Q96N53 147 aa10.81□□□□□ -0.68
UPF3A-203ENST00000474056 TRGC2P03986 189 aa10.8□□□□□ -0.68
UPF3A-203ENST00000474056 ZNF625Q96I27 306 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-203ENST00000474056 IGLV5-37A0A075B6J1 123 aa10.79□□□□□ -0.68
UPF3A-203ENST00000474056 TRAV12-1A0A0B4J245 112 aa10.79□□□□□ -0.68
UPF3A-203ENST00000474056 RPL37AP8A6NKH3 93 aa10.79□□□□□ -0.68
UPF3A-203ENST00000474056 ZNF861PO60384 105 aa10.79□□□□□ -0.68
UPF3A-203ENST00000474056 FAM19A2Q8N3H0 131 aa10.79□□□□□ -0.68
UPF3A-203ENST00000474056 ERG28Q9UKR5 140 aa10.79□□□□□ -0.68
UPF3A-203ENST00000474056 GAGE10A6NGK3 116 aa10.78□□□□□ -0.68
UPF3A-203ENST00000474056 HSBP1O75506 76 aa10.78□□□□□ -0.68
UPF3A-203ENST00000474056 SCO1O75880 301 aa10.77□□□□□ -0.69
UPF3A-203ENST00000474056 NKAPP1Q8N9T2 125 aa10.77□□□□□ -0.69
UPF3A-203ENST00000474056 TMEM223A0PJW6 202 aa10.76□□□□□ -0.69
UPF3A-203ENST00000474056 LINC00310P59036 64 aa10.76□□□□□ -0.69
UPF3A-203ENST00000474056 SND1-IT1Q9HBX3 110 aa10.76□□□□□ -0.69
UPF3A-203ENST00000474056 BCE1O60756 84 aa10.75□□□□□ -0.69
UPF3A-203ENST00000474056 COX17Q14061 63 aa10.75□□□□□ -0.69
UPF3A-203ENST00000474056 IGLV1-50A0A075B6I6 118 aa10.74□□□□□ -0.69
UPF3A-203ENST00000474056 VPREB1P12018 145 aa10.74□□□□□ -0.69
UPF3A-203ENST00000474056 SFTA2Q6UW10 78 aa10.74□□□□□ -0.69
UPF3A-203ENST00000474056 SERF1AO75920 110 aa10.73□□□□□ -0.69
UPF3A-203ENST00000474056 IGKV2-28A0A075B6P5 120 aa10.72□□□□□ -0.69
UPF3A-203ENST00000474056 H0Y8G0 127 aa10.72□□□□□ -0.69
UPF3A-203ENST00000474056 IGKV2D-28P01615 120 aa10.72□□□□□ -0.69
UPF3A-203ENST00000474056 RPL28P46779 137 aaKnown RBP10.72□□□□□ -0.69
UPF3A-203ENST00000474056 Q8NDZ9 215 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms