RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LPAP08519 4548 aa11.39□□□□□ -0.59
CCDC88B-206ENST00000473405 H0Y9J4 135 aa11.38□□□□□ -0.59
CCDC88B-206ENST00000473405 PACRGQ96M98 296 aaPredicted RBP11.38□□□□□ -0.59
CCDC88B-206ENST00000473405 YPEL4Q96NS1 127 aa11.38□□□□□ -0.59
CCDC88B-206ENST00000473405 S100A1P23297 94 aa11.36□□□□□ -0.59
CCDC88B-206ENST00000473405 PRR26Q8N8Z3 221 aa11.36□□□□□ -0.59
CCDC88B-206ENST00000473405 PRSS2P07478 247 aa11.35□□□□□ -0.59
CCDC88B-206ENST00000473405 UBE2BP63146 152 aa11.35□□□□□ -0.59
CCDC88B-206ENST00000473405 Q8IZM0 81 aa11.35□□□□□ -0.59
CCDC88B-206ENST00000473405 TOMM7Q9P0U1 55 aa11.35□□□□□ -0.59
CCDC88B-206ENST00000473405 KRTAP1-4P0C5Y4 121 aa11.34□□□□□ -0.59
CCDC88B-206ENST00000473405 TIMM17AQ99595 171 aa11.34□□□□□ -0.59
CCDC88B-206ENST00000473405 CDKN2A-AS1Q9UH64 79 aa11.34□□□□□ -0.59
CCDC88B-206ENST00000473405 CKS1BP61024 79 aa11.33□□□□□ -0.6
CCDC88B-206ENST00000473405 HERVK_113P63121 156 aa11.33□□□□□ -0.6
CCDC88B-206ENST00000473405 KIAA1644Q3SXP7 199 aa11.33□□□□□ -0.6
CCDC88B-206ENST00000473405 CBLN2Q8IUK8 224 aa11.33□□□□□ -0.6
CCDC88B-206ENST00000473405 TOMM6Q96B49 74 aa11.33□□□□□ -0.6
CCDC88B-206ENST00000473405 TRAV9-1A0A075B6T8 112 aa11.32□□□□□ -0.6
CCDC88B-206ENST00000473405 C6orf226Q5I0X4 101 aa11.32□□□□□ -0.6
CCDC88B-206ENST00000473405 LINC00469Q8N7U9 141 aa11.32□□□□□ -0.6
CCDC88B-206ENST00000473405 ALKBH7Q9BT30 221 aaPredicted RBP11.32□□□□□ -0.6
CCDC88B-206ENST00000473405 SCO1O75880 301 aa11.31□□□□□ -0.6
CCDC88B-206ENST00000473405 SEC11AP67812 179 aa11.31□□□□□ -0.6
CCDC88B-206ENST00000473405 PAPPA-AS1Q5QFB9 102 aa11.31□□□□□ -0.6
CCDC88B-206ENST00000473405 G0S2P27469 103 aa11.3□□□□□ -0.6
CCDC88B-206ENST00000473405 F8VRH5 84 aa11.29□□□□□ -0.6
CCDC88B-206ENST00000473405 ERASQ7Z444 233 aa11.29□□□□□ -0.6
CCDC88B-206ENST00000473405 GEMIN7Q9H840 131 aaKnown RBP11.29□□□□□ -0.6
CCDC88B-206ENST00000473405 XAGE1AQ9HD64 81 aa11.29□□□□□ -0.6
CCDC88B-206ENST00000473405 SMCO4Q9NRQ5 59 aa11.29□□□□□ -0.6
CCDC88B-206ENST00000473405 IGLV1-50A0A075B6I6 118 aa11.28□□□□□ -0.6
CCDC88B-206ENST00000473405 SMIM1B2RUZ4 78 aa11.28□□□□□ -0.6
CCDC88B-206ENST00000473405 C22orf24Q9Y442 160 aa11.28□□□□□ -0.6
CCDC88B-206ENST00000473405 LINC01546A6NGU7 62 aa11.27□□□□□ -0.61
CCDC88B-206ENST00000473405 S100PP25815 95 aa11.27□□□□□ -0.61
CCDC88B-206ENST00000473405 SCGB3A1Q96QR1 104 aa11.27□□□□□ -0.61
CCDC88B-206ENST00000473405 IGLV5-45A0A087WSX0 123 aa11.25□□□□□ -0.61
CCDC88B-206ENST00000473405 TINCRA0A1B0GVN0 87 aa11.25□□□□□ -0.61
CCDC88B-206ENST00000473405 GNB1LQ9BYB4 327 aa11.25□□□□□ -0.61
CCDC88B-206ENST00000473405 CXCL5P42830 114 aa11.24□□□□□ -0.61
CCDC88B-206ENST00000473405 COLCA2A8K830 154 aa11.23□□□□□ -0.61
CCDC88B-206ENST00000473405 ZNF861PO60384 105 aa11.23□□□□□ -0.61
CCDC88B-206ENST00000473405 TP73-AS1Q9UF72 201 aa11.23□□□□□ -0.61
CCDC88B-206ENST00000473405 NUPR1O60356 82 aa11.22□□□□□ -0.61
CCDC88B-206ENST00000473405 LBHQ53QV2 105 aaPredicted RBP11.22□□□□□ -0.61
CCDC88B-206ENST00000473405 PDZD11Q5EBL8 140 aa11.22□□□□□ -0.61
CCDC88B-206ENST00000473405 MRPL55Q7Z7F7 128 aaKnown RBP11.22□□□□□ -0.61
CCDC88B-206ENST00000473405 COX7B2Q8TF08 81 aa11.22□□□□□ -0.61
CCDC88B-206ENST00000473405 CST9LQ9H4G1 147 aa11.22□□□□□ -0.61
CCDC88B-206ENST00000473405 LINC01549A6NIU2 74 aa11.2□□□□□ -0.62
CCDC88B-206ENST00000473405 RPL13AP40429 203 aaKnown RBP11.2□□□□□ -0.62
CCDC88B-206ENST00000473405 SPINK8P0C7L1 97 aa11.19□□□□□ -0.62
CCDC88B-206ENST00000473405 COX19Q49B96 90 aa11.19□□□□□ -0.62
CCDC88B-206ENST00000473405 PMVKQ15126 192 aa11.18□□□□□ -0.62
CCDC88B-206ENST00000473405 MRPL18Q9H0U6 180 aaKnown RBP11.18□□□□□ -0.62
CCDC88B-206ENST00000473405 MUC2Q02817 5179 aa11.17□□□□□ -0.62
CCDC88B-206ENST00000473405 BCE1O60756 84 aa11.16□□□□□ -0.62
CCDC88B-206ENST00000473405 FA2HQ7L5A8 372 aa11.16□□□□□ -0.62
CCDC88B-206ENST00000473405 LINC00167Q96N53 147 aa11.16□□□□□ -0.62
CCDC88B-206ENST00000473405 A0A096LNJ9 63 aa11.15□□□□□ -0.62
CCDC88B-206ENST00000473405 RPL37AP8A6NKH3 93 aa11.15□□□□□ -0.62
CCDC88B-206ENST00000473405 FABP9Q0Z7S8 132 aa11.15□□□□□ -0.62
CCDC88B-206ENST00000473405 IGLV5-37A0A075B6J1 123 aa11.14□□□□□ -0.63
CCDC88B-206ENST00000473405 A0A087X002 238 aa11.13□□□□□ -0.63
CCDC88B-206ENST00000473405 GAGE10A6NGK3 116 aa11.13□□□□□ -0.63
CCDC88B-206ENST00000473405 IGLC3P0DOY3 106 aa11.13□□□□□ -0.63
CCDC88B-206ENST00000473405 RPL28P46779 137 aaKnown RBP11.13□□□□□ -0.63
CCDC88B-206ENST00000473405 RAB5BP61020 215 aa11.13□□□□□ -0.63
CCDC88B-206ENST00000473405 IGLV5-39A0A0G2JS06 123 aa11.12□□□□□ -0.63
CCDC88B-206ENST00000473405 URB1-AS1Q96HZ7 61 aa11.12□□□□□ -0.63
CCDC88B-206ENST00000473405 TRAPPC1Q9Y5R8 145 aa11.12□□□□□ -0.63
CCDC88B-206ENST00000473405 H3BRM9 83 aa11.11□□□□□ -0.63
CCDC88B-206ENST00000473405 KRTAP13-1Q8IUC0 172 aa11.11□□□□□ -0.63
CCDC88B-206ENST00000473405 ATP5LO75964 103 aa11.1□□□□□ -0.63
CCDC88B-206ENST00000473405 TRGC2P03986 189 aa11.09□□□□□ -0.63
CCDC88B-206ENST00000473405 ZNF22P17026 224 aaPredicted RBP11.09□□□□□ -0.63
CCDC88B-206ENST00000473405 PRR4Q16378 134 aa11.09□□□□□ -0.63
CCDC88B-206ENST00000473405 NKAPP1Q8N9T2 125 aa11.09□□□□□ -0.63
CCDC88B-206ENST00000473405 C18orf32Q8TCD1 76 aa11.09□□□□□ -0.63
CCDC88B-206ENST00000473405 PFN2P35080 140 aa11.07□□□□□ -0.64
CCDC88B-206ENST00000473405 PMCHL1Q16048 86 aa11.07□□□□□ -0.64
CCDC88B-206ENST00000473405 NDUFA6P56556 154 aa11.06□□□□□ -0.64
CCDC88B-206ENST00000473405 IGKV2-28A0A075B6P5 120 aa11.05□□□□□ -0.64
CCDC88B-206ENST00000473405 IGKV2D-28P01615 120 aa11.05□□□□□ -0.64
CCDC88B-206ENST00000473405 HBDP02042 147 aa11.05□□□□□ -0.64
CCDC88B-206ENST00000473405 LINC00614P0C842 121 aa11.05□□□□□ -0.64
CCDC88B-206ENST00000473405 CRYGAP11844 174 aa11.05□□□□□ -0.64
CCDC88B-206ENST00000473405 ANAPC11Q9NYG5 84 aa11.05□□□□□ -0.64
CCDC88B-206ENST00000473405 TSPAN13O95857 204 aa11.04□□□□□ -0.64
CCDC88B-206ENST00000473405 VPREB1P12018 145 aa11.04□□□□□ -0.64
CCDC88B-206ENST00000473405 SND1-IT1Q9HBX3 110 aa11.04□□□□□ -0.64
CCDC88B-206ENST00000473405 ERG28Q9UKR5 140 aa11.04□□□□□ -0.64
CCDC88B-206ENST00000473405 C11orf86A6NJI1 115 aa11.03□□□□□ -0.64
CCDC88B-206ENST00000473405 UBE2AP49459 152 aa11.03□□□□□ -0.64
CCDC88B-206ENST00000473405 KRTAP13-2Q52LG2 175 aa11.03□□□□□ -0.64
CCDC88B-206ENST00000473405 Q8NDZ9 215 aa11.02□□□□□ -0.65
CCDC88B-206ENST00000473405 TYMSOSQ8TAI1 123 aa11.02□□□□□ -0.65
CCDC88B-206ENST00000473405 COX17Q14061 63 aa11.01□□□□□ -0.65
CCDC88B-206ENST00000473405 ZNF625Q96I27 306 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms