RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SPANXCQ9NY87 97 aa8.59□□□□□ -1.03
VPS13D-205ENST00000473099 TMEM238LA0A1B0GVL6 79 aa8.58□□□□□ -1.04
VPS13D-205ENST00000473099 A6NDN8 102 aa8.58□□□□□ -1.04
VPS13D-205ENST00000473099 A6NJY4 79 aa8.58□□□□□ -1.04
VPS13D-205ENST00000473099 F8WDY8 70 aa8.58□□□□□ -1.04
VPS13D-205ENST00000473099 BATFQ16520 125 aa8.58□□□□□ -1.04
VPS13D-205ENST00000473099 MEIG1Q5JSS6 88 aa8.58□□□□□ -1.04
VPS13D-205ENST00000473099 Q9HAA7 133 aa8.58□□□□□ -1.04
VPS13D-205ENST00000473099 EREGO14944 169 aa8.57□□□□□ -1.04
VPS13D-205ENST00000473099 IFITM1P13164 125 aa8.57□□□□□ -1.04
VPS13D-205ENST00000473099 SPAG11BQ08648 103 aa8.57□□□□□ -1.04
VPS13D-205ENST00000473099 KIAA0087Q14695 138 aa8.57□□□□□ -1.04
VPS13D-205ENST00000473099 COL5A1-AS1Q5SY13 56 aa8.57□□□□□ -1.04
VPS13D-205ENST00000473099 CSMD3Q7Z407 3707 aa8.57□□□□□ -1.04
VPS13D-205ENST00000473099 PTTG1IPP53801 180 aa8.56□□□□□ -1.04
VPS13D-205ENST00000473099 LITAFQ99732 161 aa8.56□□□□□ -1.04
VPS13D-205ENST00000473099 PPDPFQ9H3Y8 114 aa8.56□□□□□ -1.04
VPS13D-205ENST00000473099 C3orf84H3BNL1 204 aa8.55□□□□□ -1.04
VPS13D-205ENST00000473099 ZNF561-AS1K7EIQ3 104 aa8.55□□□□□ -1.04
VPS13D-205ENST00000473099 RPL24P83731 157 aaKnown RBP8.55□□□□□ -1.04
VPS13D-205ENST00000473099 COX17Q14061 63 aa8.55□□□□□ -1.04
VPS13D-205ENST00000473099 C2orf48Q96LS8 159 aa8.54□□□□□ -1.04
VPS13D-205ENST00000473099 GVQW2A0A096LPI5 108 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-205ENST00000473099 NBDYA0A0U1RRE5 68 aa8.53□□□□□ -1.04
VPS13D-205ENST00000473099 FXYD2P54710 66 aa8.53□□□□□ -1.04
VPS13D-205ENST00000473099 ERG28Q9UKR5 140 aa8.53□□□□□ -1.04
VPS13D-205ENST00000473099 C15orf56Q8N910 161 aa8.52□□□□□ -1.05
VPS13D-205ENST00000473099 NTN5Q8WTR8 489 aaPredicted RBP8.52□□□□□ -1.05
VPS13D-205ENST00000473099 TENM2Q9NT68 2774 aa8.51□□□□□ -1.05
VPS13D-205ENST00000473099 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-205ENST00000473099 TRBV30A0A0K0K1B3 111 aa8.51□□□□□ -1.05
VPS13D-205ENST00000473099 SMIM13P0DJ93 91 aa8.51□□□□□ -1.05
VPS13D-205ENST00000473099 ADAMTSL4-AS1Q5T5F5 129 aa8.51□□□□□ -1.05
VPS13D-205ENST00000473099 RYR3Q15413 4870 aa8.51□□□□□ -1.05
VPS13D-205ENST00000473099 LINC00158P58513 81 aa8.5□□□□□ -1.05
VPS13D-205ENST00000473099 C2orf82Q6UX34 121 aa8.5□□□□□ -1.05
VPS13D-205ENST00000473099 MUSTN1Q8IVN3 82 aa8.5□□□□□ -1.05
VPS13D-205ENST00000473099 KRTAP1-5Q9BYS1 174 aa8.5□□□□□ -1.05
VPS13D-205ENST00000473099 NHP2Q9NX24 153 aaKnown RBP8.5□□□□□ -1.05
VPS13D-205ENST00000473099 A0A1B0GWB2 263 aa8.49□□□□□ -1.05
VPS13D-205ENST00000473099 PSCAO43653 123 aa8.49□□□□□ -1.05
VPS13D-205ENST00000473099 CASC10Q5T4H9 136 aa8.49□□□□□ -1.05
VPS13D-205ENST00000473099 LINC00308Q8TCZ7 52 aa8.49□□□□□ -1.05
VPS13D-205ENST00000473099 CAMK2N2Q96S95 79 aa8.49□□□□□ -1.05
VPS13D-205ENST00000473099 STARD9Q9P2P6 4700 aa8.49□□□□□ -1.05
VPS13D-205ENST00000473099 USP17L23D6RBM5 183 aa8.48□□□□□ -1.05
VPS13D-205ENST00000473099 PFN2P35080 140 aa8.48□□□□□ -1.05
VPS13D-205ENST00000473099 HIGD2BQ4VC39 106 aa8.48□□□□□ -1.05
VPS13D-205ENST00000473099 C14orf177Q52M58 125 aa8.48□□□□□ -1.05
VPS13D-205ENST00000473099 UNQ6190/PRO20217Q6UXQ8 127 aa8.48□□□□□ -1.05
VPS13D-205ENST00000473099 C6orf223Q8N319 242 aa8.48□□□□□ -1.05
VPS13D-205ENST00000473099 MIR7-3HGQ8N6C7 128 aa8.48□□□□□ -1.05
VPS13D-205ENST00000473099 PLECQ15149 4684 aaKnown RBP8.47□□□□□ -1.05
VPS13D-205ENST00000473099 A0A0U1RRA0 63 aa8.47□□□□□ -1.05
VPS13D-205ENST00000473099 A4D1N5 150 aa8.47□□□□□ -1.05
VPS13D-205ENST00000473099 A0A0B4J2C4 111 aa8.46□□□□□ -1.06
VPS13D-205ENST00000473099 SYCNQ0VAF6 134 aa8.46□□□□□ -1.06
VPS13D-205ENST00000473099 RNF151Q2KHN1 245 aa8.46□□□□□ -1.06
VPS13D-205ENST00000473099 DAND5Q8N907 189 aa8.46□□□□□ -1.06
VPS13D-205ENST00000473099 LOC107984156A0A0G2JMH3 177 aa8.45□□□□□ -1.06
VPS13D-205ENST00000473099 C10orf25Q5T742 122 aa8.45□□□□□ -1.06
VPS13D-205ENST00000473099 ARL17AQ8IVW1 177 aa8.45□□□□□ -1.06
VPS13D-205ENST00000473099 RAB37Q96AX2 223 aa8.45□□□□□ -1.06
VPS13D-205ENST00000473099 LINC00526Q96FQ7 95 aa8.45□□□□□ -1.06
VPS13D-205ENST00000473099 C6orf48Q9UBA6 75 aa8.45□□□□□ -1.06
VPS13D-205ENST00000473099 TAX1BP3O14907 124 aa8.44□□□□□ -1.06
VPS13D-205ENST00000473099 CFC1BP0CG36 223 aa8.44□□□□□ -1.06
VPS13D-205ENST00000473099 CFC1P0CG37 223 aa8.44□□□□□ -1.06
VPS13D-205ENST00000473099 NPC2P61916 151 aa8.44□□□□□ -1.06
VPS13D-205ENST00000473099 LINC00476Q8WZB0 136 aa8.44□□□□□ -1.06
VPS13D-205ENST00000473099 CARD19Q96LW7 228 aa8.44□□□□□ -1.06
VPS13D-205ENST00000473099 LYSTQ99698 3801 aa8.44□□□□□ -1.06
VPS13D-205ENST00000473099 SOSTDC1Q6X4U4 206 aa8.43□□□□□ -1.06
VPS13D-205ENST00000473099 Q6ZR54 194 aa8.43□□□□□ -1.06
VPS13D-205ENST00000473099 Q6ZRU5 148 aa8.43□□□□□ -1.06
VPS13D-205ENST00000473099 PRO1854Q9UHT4 67 aa8.43□□□□□ -1.06
VPS13D-205ENST00000473099 C9orf118A6NHY6 69 aa8.42□□□□□ -1.06
VPS13D-205ENST00000473099 LY6G6CO95867 125 aa8.42□□□□□ -1.06
VPS13D-205ENST00000473099 C9orf116Q5BN46 136 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-205ENST00000473099 SND1-IT1Q9HBX3 110 aa8.42□□□□□ -1.06
VPS13D-205ENST00000473099 NDUFC2-KCTD14E9PQ53 114 aa8.41□□□□□ -1.06
VPS13D-205ENST00000473099 NDUFC2O95298 119 aa8.41□□□□□ -1.06
VPS13D-205ENST00000473099 TLX1NBP0CAT3 122 aa8.41□□□□□ -1.06
VPS13D-205ENST00000473099 Q6ZRN7 208 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-205ENST00000473099 VPS13DQ5THJ4 4388 aa8.4□□□□□ -1.06
VPS13D-205ENST00000473099 K7ERJ3 54 aa8.4□□□□□ -1.06
VPS13D-205ENST00000473099 PKIGQ9Y2B9 76 aa8.4□□□□□ -1.06
VPS13D-205ENST00000473099 DNAH1Q9P2D7 4330 aa8.4□□□□□ -1.07
VPS13D-205ENST00000473099 TRAV13-2A0A0B4J235 113 aa8.39□□□□□ -1.07
VPS13D-205ENST00000473099 M0R2N4 97 aa8.39□□□□□ -1.07
VPS13D-205ENST00000473099 EIF4EBP3O60516 100 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-205ENST00000473099 CNBPP62633 177 aaKnown RBP8.39□□□□□ -1.07
VPS13D-205ENST00000473099 LCE6AA0A183 80 aa8.38□□□□□ -1.07
VPS13D-205ENST00000473099 LECT2O14960 151 aa8.38□□□□□ -1.07
VPS13D-205ENST00000473099 LYRM7Q5U5X0 104 aa8.38□□□□□ -1.07
VPS13D-205ENST00000473099 PGPEP1Q9NXJ5 209 aa8.38□□□□□ -1.07
VPS13D-205ENST00000473099 DNAH6Q9C0G6 4158 aa8.38□□□□□ -1.07
VPS13D-205ENST00000473099 A0A1B0GV90 55 aa8.37□□□□□ -1.07
VPS13D-205ENST00000473099 LRCOL1A6NCL2 159 aa8.37□□□□□ -1.07
VPS13D-205ENST00000473099 H3BUT2 72 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms