RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SCO1O75880 301 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 MT3P25713 68 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 FAM229BQ4G0N7 80 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 MRPL55Q7Z7F7 128 aaKnown RBP2.9□□□□□ -1.95
PTPN4-209ENST00000469511 DAND5Q8N907 189 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 FAM213BQ8TBF2 198 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 MBD3L1Q8WWY6 194 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 ST20Q9HBF5 79 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 SYNE2Q8WXH0 6885 aaKnown RBP2.9□□□□□ -1.95
PTPN4-209ENST00000469511 BORCS7-ASMTA0A0B4J1R7 106 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 TRBV27A0A0K0K1C4 114 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 ZNF727A8MUV8 499 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 K7EN84 100 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 M0R2T5 61 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 PFDN1O60925 122 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 PRLHP81277 87 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 FP248Q71RG6 208 aaPredicted RBP2.89□□□□□ -1.95
PTPN4-209ENST00000469511 C11orf52Q96A22 123 aa2.89□□□□□ -1.95
PTPN4-209ENST00000469511 CSDC2Q9Y534 153 aaKnown RBP2.89□□□□□ -1.95
PTPN4-209ENST00000469511 FXYD6-FXYD2A0A087WZ82 144 aa2.88□□□□□ -1.95
PTPN4-209ENST00000469511 TRBV30A0A0K0K1B3 111 aa2.88□□□□□ -1.95
PTPN4-209ENST00000469511 F8WDY8 70 aa2.88□□□□□ -1.95
PTPN4-209ENST00000469511 RAB4AP20338 218 aa2.88□□□□□ -1.95
PTPN4-209ENST00000469511 PCOTHQ58A44 107 aa2.88□□□□□ -1.95
PTPN4-209ENST00000469511 ZC2HC1BQ5TFG8 222 aa2.88□□□□□ -1.95
PTPN4-209ENST00000469511 AMN1Q8IY45 258 aa2.88□□□□□ -1.95
PTPN4-209ENST00000469511 PACRGQ96M98 296 aaPredicted RBP2.88□□□□□ -1.95
PTPN4-209ENST00000469511 IGLV8-61A0A075B6I0 122 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 XKRY2A2RUG3 117 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 UBE2AP49459 152 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 GNG4P50150 75 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 RPL32P62910 135 aaKnown RBP2.87□□□□□ -1.95
PTPN4-209ENST00000469511 TEX261Q6UWH6 196 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 PLEKHB2Q96CS7 222 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 FAM218AQ96MZ4 157 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 GNG13Q9P2W3 67 aa2.87□□□□□ -1.95
PTPN4-209ENST00000469511 IGKV2-28A0A075B6P5 120 aa2.86□□□□□ -1.95
PTPN4-209ENST00000469511 TMEM238C9JI98 176 aa2.86□□□□□ -1.95
PTPN4-209ENST00000469511 SMLR1H3BR10 107 aa2.86□□□□□ -1.95
PTPN4-209ENST00000469511 IGKV2D-28P01615 120 aa2.86□□□□□ -1.95
PTPN4-209ENST00000469511 FCER1GP30273 86 aa2.86□□□□□ -1.95
PTPN4-209ENST00000469511 TIMM21Q9BVV7 248 aa2.86□□□□□ -1.95
PTPN4-209ENST00000469511 TOMM7Q9P0U1 55 aa2.86□□□□□ -1.95
PTPN4-209ENST00000469511 ARPC5O15511 151 aa2.85□□□□□ -1.95
PTPN4-209ENST00000469511 CTAG1AP78358 180 aa2.85□□□□□ -1.95
PTPN4-209ENST00000469511 SMIM15Q7Z3B0 74 aa2.85□□□□□ -1.95
PTPN4-209ENST00000469511 Q8NBF4 154 aa2.85□□□□□ -1.95
PTPN4-209ENST00000469511 MED9Q9NWA0 146 aa2.85□□□□□ -1.95
PTPN4-209ENST00000469511 TP73-AS1Q9UF72 201 aa2.85□□□□□ -1.95
PTPN4-209ENST00000469511 TGIF2-C20orf24A0A0A6YYL0 155 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 TCAPO15273 167 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 GATCO43716 136 aaKnown RBP2.84□□□□□ -1.95
PTPN4-209ENST00000469511 GIPP09681 153 aaPredicted RBP2.84□□□□□ -1.95
PTPN4-209ENST00000469511 HBBP68871 147 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 KRTAP5-3Q6L8H2 238 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 SPAG11AQ6PDA7 123 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 FAM19A1Q7Z5A9 133 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 Q8N377 158 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 TMEM191AQ9H0A3 160 aa2.84□□□□□ -1.95
PTPN4-209ENST00000469511 IGLV4-3A0A075B6K6 122 aa2.83□□□□□ -1.96
PTPN4-209ENST00000469511 MRPS36P82909 103 aaKnown RBP2.83□□□□□ -1.96
PTPN4-209ENST00000469511 MRPL51Q4U2R6 128 aaKnown RBP2.83□□□□□ -1.96
PTPN4-209ENST00000469511 Q6ZVQ6 151 aa2.83□□□□□ -1.96
PTPN4-209ENST00000469511 Q8NDZ9 215 aa2.83□□□□□ -1.96
PTPN4-209ENST00000469511 S100ZQ8WXG8 99 aa2.83□□□□□ -1.96
PTPN4-209ENST00000469511 SMIM12Q96EX1 92 aa2.83□□□□□ -1.96
PTPN4-209ENST00000469511 SPRR4Q96PI1 79 aa2.83□□□□□ -1.96
PTPN4-209ENST00000469511 BATF3Q9NR55 127 aa2.83□□□□□ -1.96
PTPN4-209ENST00000469511 A0A1B0GUT8 65 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 M0R378 163 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 C6orf226Q5I0X4 101 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 FAM210AQ96ND0 272 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 KIR2DL4Q99706 377 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 KRTAP2-2Q9BYT5 123 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 TMEM126AQ9H061 195 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 MANBALQ9NQG1 85 aa2.82□□□□□ -1.96
PTPN4-209ENST00000469511 MACF1Q9UPN3 7388 aaKnown RBP2.81□□□□□ -1.96
PTPN4-209ENST00000469511 C9orf92A6NGG3 77 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 HIGD1CA8MV81 97 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 A8MWL6 223 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 UMAD1C9J7I0 102 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 RAB5BP61020 215 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 CKS1BP61024 79 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 SMAGPQ0VAQ4 97 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 FAM231DQ6ZW35 169 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 CBLN2Q8IUK8 224 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 HIGD2AQ9BW72 106 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 BIN3Q9NQY0 253 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 SPANXA1Q9NS26 97 aa2.81□□□□□ -1.96
PTPN4-209ENST00000469511 F8VRH5 84 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 PDE6DO43924 150 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 SPINK1P00995 79 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 NPYP01303 97 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 FAM104BQ5XKR9 115 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 Q6ZN92 141 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 LINC00299Q6ZSB3 139 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 Q8IZM0 81 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 LINC01561Q8N1V8 128 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 SMIM2Q9BVW6 85 aa2.8□□□□□ -1.96
PTPN4-209ENST00000469511 CDKN2A-AS1Q9UH64 79 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms