RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CCL18P55774 89 aa6.18□□□□□ -1.42
SYNE1-217ENST00000466159 SS18Q15532 418 aa6.18□□□□□ -1.42
SYNE1-217ENST00000466159 C6orf226Q5I0X4 101 aa6.18□□□□□ -1.42
SYNE1-217ENST00000466159 ANAPC13Q9BS18 74 aa6.18□□□□□ -1.42
SYNE1-217ENST00000466159 PPDPFQ9H3Y8 114 aa6.18□□□□□ -1.42
SYNE1-217ENST00000466159 SS18L2Q9UHA2 77 aa6.18□□□□□ -1.42
SYNE1-217ENST00000466159 CELA1Q9UNI1 258 aa6.18□□□□□ -1.42
SYNE1-217ENST00000466159 IBA57-AS1B1ANH7 110 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 APOC4P55056 127 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 FAM218AQ96MZ4 157 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 CITED1Q99966 193 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 TRAV13-2A0A0B4J235 113 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 TRAV8-4A0A0B4J246 113 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 CRPP02741 224 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 DAD1P61803 113 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 LINC00269Q8N2A0 174 aa6.17□□□□□ -1.42
SYNE1-217ENST00000466159 NHLRC4P0CG21 123 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-217ENST00000466159 Q8NAQ8 132 aa6.16□□□□□ -1.42
SYNE1-217ENST00000466159 IGLV10-54A0A075B6I4 117 aa6.15□□□□□ -1.42
SYNE1-217ENST00000466159 RPL28P46779 137 aaKnown RBP6.15□□□□□ -1.43
SYNE1-217ENST00000466159 TRACP01848 142 aa6.14□□□□□ -1.43
SYNE1-217ENST00000466159 ANGP03950 147 aaKnown RBP6.14□□□□□ -1.43
SYNE1-217ENST00000466159 HTN3P15516 51 aa6.14□□□□□ -1.43
SYNE1-217ENST00000466159 SMIM11BQ8TCY0 68 aa6.14□□□□□ -1.43
SYNE1-217ENST00000466159 ATP5G1P05496 136 aa6.14□□□□□ -1.43
SYNE1-217ENST00000466159 DEFB121Q5J5C9 76 aa6.14□□□□□ -1.43
SYNE1-217ENST00000466159 Q8IZM0 81 aa6.14□□□□□ -1.43
SYNE1-217ENST00000466159 B5MCH6 92 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 IGHV4-30-4P0DP06 118 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 MIFP14174 115 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 CHCHD10Q8WYQ3 142 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-217ENST00000466159 Q9HAA7 133 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 BAALC-AS2P0C853 105 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 REG3AQ06141 175 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 CD164L2Q6UWJ8 174 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 WFDC9Q8NEX5 89 aa6.13□□□□□ -1.43
SYNE1-217ENST00000466159 C22orf24Q9Y442 160 aa6.12□□□□□ -1.43
SYNE1-217ENST00000466159 SNCGO76070 127 aa6.12□□□□□ -1.43
SYNE1-217ENST00000466159 SPART-AS1P0CW21 52 aa6.12□□□□□ -1.43
SYNE1-217ENST00000466159 KIAA0087Q14695 138 aa6.12□□□□□ -1.43
SYNE1-217ENST00000466159 C15orf53Q8NAA6 179 aa6.12□□□□□ -1.43
SYNE1-217ENST00000466159 OR13C6PQ8NH95 151 aa6.12□□□□□ -1.43
SYNE1-217ENST00000466159 A0A087WYN8 130 aa6.12□□□□□ -1.43
SYNE1-217ENST00000466159 NDUFV3P56181 108 aaKnown RBP6.12□□□□□ -1.43
SYNE1-217ENST00000466159 MRPL23Q16540 153 aaKnown RBP6.11□□□□□ -1.43
SYNE1-217ENST00000466159 LINC01561Q8N1V8 128 aa6.11□□□□□ -1.43
SYNE1-217ENST00000466159 MALP21145 153 aa6.11□□□□□ -1.43
SYNE1-217ENST00000466159 PRR3P79522 188 aaKnown RBP6.11□□□□□ -1.43
SYNE1-217ENST00000466159 GAGE2BQ13066 116 aa6.11□□□□□ -1.43
SYNE1-217ENST00000466159 GAGE2EQ4V326 116 aa6.11□□□□□ -1.43
SYNE1-217ENST00000466159 C9orf116Q5BN46 136 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-217ENST00000466159 TTC32Q5I0X7 151 aa6.11□□□□□ -1.43
SYNE1-217ENST00000466159 GAGE2DQ9UEU5 116 aa6.11□□□□□ -1.43
SYNE1-217ENST00000466159 CCDC179H3BU77 68 aa6.1□□□□□ -1.43
SYNE1-217ENST00000466159 CFAP161Q6P656 301 aa6.1□□□□□ -1.43
SYNE1-217ENST00000466159 Q6Q795 121 aa6.1□□□□□ -1.43
SYNE1-217ENST00000466159 FAM240AA0A1B0GVK7 77 aa6.1□□□□□ -1.43
SYNE1-217ENST00000466159 WIPF1O43516 503 aa6.09□□□□□ -1.43
SYNE1-217ENST00000466159 OXLD1Q5BKU9 147 aa6.09□□□□□ -1.43
SYNE1-217ENST00000466159 LELP1Q5T871 98 aa6.09□□□□□ -1.43
SYNE1-217ENST00000466159 H0YGX0 51 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 DNAL4O96015 105 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 LINC00526Q96FQ7 95 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 KLK12Q9UKR0 248 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 F8P00451 2351 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 LECT2O14960 151 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 C6orf223Q8N319 242 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 RETNQ9HD89 108 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 ANK2Q01484 3957 aa6.08□□□□□ -1.44
SYNE1-217ENST00000466159 CXCL5P42830 114 aa6.07□□□□□ -1.44
SYNE1-217ENST00000466159 C9orf129Q5T035 196 aaKnown RBP6.07□□□□□ -1.44
SYNE1-217ENST00000466159 C10orf25Q5T742 122 aa6.07□□□□□ -1.44
SYNE1-217ENST00000466159 NANOS2P60321 138 aaKnown RBP6.07□□□□□ -1.44
SYNE1-217ENST00000466159 KRTAP10-11P60412 298 aa6.07□□□□□ -1.44
SYNE1-217ENST00000466159 COX17Q14061 63 aa6.07□□□□□ -1.44
SYNE1-217ENST00000466159 Q8NDZ9 215 aa6.07□□□□□ -1.44
SYNE1-217ENST00000466159 SLPIP03973 132 aa6.06□□□□□ -1.44
SYNE1-217ENST00000466159 LYPD5Q6UWN5 251 aa6.06□□□□□ -1.44
SYNE1-217ENST00000466159 ENHOQ6UWT2 76 aa6.06□□□□□ -1.44
SYNE1-217ENST00000466159 UNQ6190/PRO20217Q6UXQ8 127 aa6.06□□□□□ -1.44
SYNE1-217ENST00000466159 PKD1L1Q8TDX9 2849 aa6.06□□□□□ -1.44
SYNE1-217ENST00000466159 PRR34Q9NV39 138 aa6.06□□□□□ -1.44
SYNE1-217ENST00000466159 ACYP1P07311 99 aa6.05□□□□□ -1.44
SYNE1-217ENST00000466159 SPAG11BQ08648 103 aa6.05□□□□□ -1.44
SYNE1-217ENST00000466159 SMIM20Q8N5G0 67 aa6.05□□□□□ -1.44
SYNE1-217ENST00000466159 SMCR5Q8TEV8 140 aa6.05□□□□□ -1.44
SYNE1-217ENST00000466159 KLK5Q9Y337 293 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-217ENST00000466159 CYSRT1A8MQ03 144 aa6.04□□□□□ -1.44
SYNE1-217ENST00000466159 NCR3O14931 201 aa6.04□□□□□ -1.44
SYNE1-217ENST00000466159 NDUFC2O95298 119 aa6.04□□□□□ -1.44
SYNE1-217ENST00000466159 INAFM2P0DMQ5 153 aa6.04□□□□□ -1.44
SYNE1-217ENST00000466159 GAGE2AQ6NT46 116 aa6.04□□□□□ -1.44
SYNE1-217ENST00000466159 CMYA5Q8N3K9 4069 aa6.03□□□□□ -1.44
SYNE1-217ENST00000466159 TMEM126AQ9H061 195 aa6.03□□□□□ -1.44
SYNE1-217ENST00000466159 C14orf132Q9NPU4 83 aa6.03□□□□□ -1.44
SYNE1-217ENST00000466159 FBN1P35555 2871 aaKnown RBP6.03□□□□□ -1.44
SYNE1-217ENST00000466159 KPRPQ5T749 579 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-217ENST00000466159 Q6ZTC4 211 aa6.03□□□□□ -1.44
SYNE1-217ENST00000466159 WFDC10BQ8IUB3 73 aa6.03□□□□□ -1.44
SYNE1-217ENST00000466159 STAB1Q9NY15 2570 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms