RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 TRBV30A0A0K0K1B3 111 aa11.52□□□□□ -0.57
SF3A1-205ENST00000463818 LINC00173Q6ZV60 143 aa11.52□□□□□ -0.57
SF3A1-205ENST00000463818 FAM19A5Q7Z5A7 132 aaPredicted RBP11.52□□□□□ -0.57
SF3A1-205ENST00000463818 KRTAP11-1Q8IUC1 163 aa11.52□□□□□ -0.57
SF3A1-205ENST00000463818 TOMM6Q96B49 74 aa11.52□□□□□ -0.57
SF3A1-205ENST00000463818 TIMM17AQ99595 171 aa11.52□□□□□ -0.57
SF3A1-205ENST00000463818 LRP2P98164 4655 aa11.51□□□□□ -0.57
SF3A1-205ENST00000463818 CBLN2Q8IUK8 224 aa11.51□□□□□ -0.57
SF3A1-205ENST00000463818 PACRGQ96M98 296 aaPredicted RBP11.51□□□□□ -0.57
SF3A1-205ENST00000463818 IGLV7-43P04211 117 aa11.5□□□□□ -0.57
SF3A1-205ENST00000463818 KRTAP7-1Q8IUC3 87 aa11.5□□□□□ -0.57
SF3A1-205ENST00000463818 C18orf32Q8TCD1 76 aa11.5□□□□□ -0.57
SF3A1-205ENST00000463818 NDUFC2-KCTD14E9PQ53 114 aa11.49□□□□□ -0.57
SF3A1-205ENST00000463818 FAM19A3Q7Z5A8 133 aa11.49□□□□□ -0.57
SF3A1-205ENST00000463818 PRSS2P07478 247 aa11.48□□□□□ -0.57
SF3A1-205ENST00000463818 ERASQ7Z444 233 aa11.48□□□□□ -0.57
SF3A1-205ENST00000463818 URB1-AS1Q96HZ7 61 aa11.48□□□□□ -0.57
SF3A1-205ENST00000463818 TOMM7Q9P0U1 55 aa11.48□□□□□ -0.57
SF3A1-205ENST00000463818 C9orf129Q5T035 196 aaKnown RBP11.47□□□□□ -0.57
SF3A1-205ENST00000463818 DIRC1Q969H9 104 aa11.47□□□□□ -0.57
SF3A1-205ENST00000463818 C6orf226Q5I0X4 101 aa11.46□□□□□ -0.57
SF3A1-205ENST00000463818 PAPPA-AS1Q5QFB9 102 aa11.46□□□□□ -0.57
SF3A1-205ENST00000463818 A0A096LNJ9 63 aa11.45□□□□□ -0.58
SF3A1-205ENST00000463818 M0QXV9 152 aa11.45□□□□□ -0.58
SF3A1-205ENST00000463818 CKS1BP61024 79 aa11.45□□□□□ -0.58
SF3A1-205ENST00000463818 UBE2BP63146 152 aa11.45□□□□□ -0.58
SF3A1-205ENST00000463818 FA2HQ7L5A8 372 aa11.45□□□□□ -0.58
SF3A1-205ENST00000463818 HERVK_113P63121 156 aa11.44□□□□□ -0.58
SF3A1-205ENST00000463818 SEC11AP67812 179 aa11.44□□□□□ -0.58
SF3A1-205ENST00000463818 Q8IZM0 81 aa11.44□□□□□ -0.58
SF3A1-205ENST00000463818 CDKN2A-AS1Q9UH64 79 aa11.44□□□□□ -0.58
SF3A1-205ENST00000463818 LINC00614P0C842 121 aa11.43□□□□□ -0.58
SF3A1-205ENST00000463818 H0Y9J4 135 aa11.42□□□□□ -0.58
SF3A1-205ENST00000463818 PRR26Q8N8Z3 221 aa11.42□□□□□ -0.58
SF3A1-205ENST00000463818 GEMIN7Q9H840 131 aaKnown RBP11.42□□□□□ -0.58
SF3A1-205ENST00000463818 COLCA2A8K830 154 aa11.41□□□□□ -0.58
SF3A1-205ENST00000463818 RAB5BP61020 215 aa11.41□□□□□ -0.58
SF3A1-205ENST00000463818 LINC00469Q8N7U9 141 aa11.41□□□□□ -0.58
SF3A1-205ENST00000463818 SCGB3A1Q96QR1 104 aa11.41□□□□□ -0.58
SF3A1-205ENST00000463818 HBDP02042 147 aa11.38□□□□□ -0.59
SF3A1-205ENST00000463818 PDZD11Q5EBL8 140 aa11.38□□□□□ -0.59
SF3A1-205ENST00000463818 CHCHD1Q96BP2 118 aaKnown RBP11.38□□□□□ -0.59
SF3A1-205ENST00000463818 XAGE1AQ9HD64 81 aa11.38□□□□□ -0.59
SF3A1-205ENST00000463818 C22orf24Q9Y442 160 aa11.38□□□□□ -0.59
SF3A1-205ENST00000463818 RNF213Q63HN8 5207 aa11.37□□□□□ -0.59
SF3A1-205ENST00000463818 F8VRH5 84 aa11.37□□□□□ -0.59
SF3A1-205ENST00000463818 TRGC2P03986 189 aa11.37□□□□□ -0.59
SF3A1-205ENST00000463818 IGLV5-45A0A087WSX0 123 aa11.36□□□□□ -0.59
SF3A1-205ENST00000463818 TINCRA0A1B0GVN0 87 aa11.35□□□□□ -0.59
SF3A1-205ENST00000463818 KRTAP1-4P0C5Y4 121 aa11.35□□□□□ -0.59
SF3A1-205ENST00000463818 CST9LQ9H4G1 147 aa11.35□□□□□ -0.59
SF3A1-205ENST00000463818 IGLV1-50A0A075B6I6 118 aa11.34□□□□□ -0.59
SF3A1-205ENST00000463818 SMIM1B2RUZ4 78 aa11.34□□□□□ -0.59
SF3A1-205ENST00000463818 CXCL5P42830 114 aa11.34□□□□□ -0.59
SF3A1-205ENST00000463818 PMVKQ15126 192 aa11.34□□□□□ -0.59
SF3A1-205ENST00000463818 LBHQ53QV2 105 aaPredicted RBP11.34□□□□□ -0.59
SF3A1-205ENST00000463818 COX7B2Q8TF08 81 aa11.33□□□□□ -0.6
SF3A1-205ENST00000463818 ZNF861PO60384 105 aa11.32□□□□□ -0.6
SF3A1-205ENST00000463818 ATP5LO75964 103 aa11.31□□□□□ -0.6
SF3A1-205ENST00000463818 LINC00310P59036 64 aa11.31□□□□□ -0.6
SF3A1-205ENST00000463818 PMCHL1Q16048 86 aa11.31□□□□□ -0.6
SF3A1-205ENST00000463818 NUPR1O60356 82 aa11.3□□□□□ -0.6
SF3A1-205ENST00000463818 SCO1O75880 301 aa11.29□□□□□ -0.6
SF3A1-205ENST00000463818 SPINK8P0C7L1 97 aa11.29□□□□□ -0.6
SF3A1-205ENST00000463818 IGLC3P0DOY3 106 aa11.29□□□□□ -0.6
SF3A1-205ENST00000463818 MRPL55Q7Z7F7 128 aaKnown RBP11.29□□□□□ -0.6
SF3A1-205ENST00000463818 TP73-AS1Q9UF72 201 aa11.29□□□□□ -0.6
SF3A1-205ENST00000463818 BAGE3Q86Y29 109 aa11.27□□□□□ -0.61
SF3A1-205ENST00000463818 HSBP1O75506 76 aa11.26□□□□□ -0.61
SF3A1-205ENST00000463818 RPL13AP40429 203 aaKnown RBP11.26□□□□□ -0.61
SF3A1-205ENST00000463818 LINC00167Q96N53 147 aa11.26□□□□□ -0.61
SF3A1-205ENST00000463818 SERF1AO75920 110 aa11.25□□□□□ -0.61
SF3A1-205ENST00000463818 TRAV12-1A0A0B4J245 112 aa11.24□□□□□ -0.61
SF3A1-205ENST00000463818 RPL37AP8A6NKH3 93 aa11.24□□□□□ -0.61
SF3A1-205ENST00000463818 H3BRM9 83 aa11.24□□□□□ -0.61
SF3A1-205ENST00000463818 LPAP08519 4548 aa11.23□□□□□ -0.61
SF3A1-205ENST00000463818 BCE1O60756 84 aa11.23□□□□□ -0.61
SF3A1-205ENST00000463818 NDUFA6P56556 154 aa11.23□□□□□ -0.61
SF3A1-205ENST00000463818 IFI27L1Q96BM0 104 aa11.23□□□□□ -0.61
SF3A1-205ENST00000463818 IGLV5-39A0A0G2JS06 123 aa11.22□□□□□ -0.61
SF3A1-205ENST00000463818 GAGE10A6NGK3 116 aa11.22□□□□□ -0.61
SF3A1-205ENST00000463818 RPL28P46779 137 aaKnown RBP11.22□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BKO60814 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BJP06899 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 ZNF22P17026 224 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BOP23527 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BBP33778 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BDP58876 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BCP62807 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST2H2BEQ16778 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-205ENST00000463818 FAM19A2Q8N3H0 131 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BHQ93079 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BNQ99877 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 HIST1H2BMQ99879 126 aa11.21□□□□□ -0.61
SF3A1-205ENST00000463818 IGLV5-37A0A075B6J1 123 aa11.2□□□□□ -0.62
SF3A1-205ENST00000463818 C11orf86A6NJI1 115 aa11.2□□□□□ -0.62
SF3A1-205ENST00000463818 S100A1P23297 94 aa11.2□□□□□ -0.62
SF3A1-205ENST00000463818 NKAPP1Q8N9T2 125 aa11.19□□□□□ -0.62
SF3A1-205ENST00000463818 PFN2P35080 140 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms