RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 I3L3M4 83 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 M0R2P5 195 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 GNRH2O43555 120 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 KRTAP5-8O75690 187 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 DPM2O94777 84 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 NPYP01303 97 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 IGLC3P0DOY3 106 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 RNASE3P12724 160 aaKnown RBP1.86□□□□□ -2.11
VPS41-210ENST00000462429 HTN1P15515 57 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 SEC11AP67812 179 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 CTAG1AP78358 180 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 RHOHQ15669 191 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 ZNF56Q15929 161 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 SPINK13Q1W4C9 94 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 RRN3P1Q2M238 152 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 DEFB114Q30KQ6 69 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 FAM74A4Q5TZK3 123 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 AMTNQ6UX39 209 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 C2orf91Q6ZV80 131 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 TOMM6Q96B49 74 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 C14orf144Q96I85 54 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 SMIM2Q9BVW6 85 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 LRBAP50851 2863 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 MYO18BQ8IUG5 2567 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 KALRNO60229 2985 aa1.86□□□□□ -2.11
VPS41-210ENST00000462429 CREBBPQ92793 2442 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 A0A087WX48 190 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 TRBV10-1A0A0K0K1A3 114 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 TRBV27A0A0K0K1C4 114 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 SMIM9A6NGZ8 99 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 A8MTW9 85 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 NCR2O95944 276 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 COX8AP10176 69 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 BATFQ16520 125 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 LYRM7Q5U5X0 104 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 GTF2H5Q6ZYL4 71 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 OR11H2Q8NH07 326 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 TMEM263Q8WUH6 116 aaKnown RBP1.85□□□□□ -2.11
VPS41-210ENST00000462429 COPS9Q8WXC6 57 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 HIGD1BQ9P298 99 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 NAV2Q8IVL1 2488 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 ZNF462Q96JM2 2506 aa1.85□□□□□ -2.11
VPS41-210ENST00000462429 SPENQ96T58 3664 aaKnown RBP1.85□□□□□ -2.11
VPS41-210ENST00000462429 CR1P17927 2039 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 ZZEF1O43149 2961 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 IGSF10Q6WRI0 2623 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 TRAV12-2A0A075B6T6 113 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 TRAV26-2A0A0B4J265 109 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 H3BRM9 83 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 M0QY20 66 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 IGLV1-51P01701 117 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 POLR2KP53803 58 aaKnown RBP1.84□□□□□ -2.11
VPS41-210ENST00000462429 HSD52Q0P140 79 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 CIRBPQ14011 172 aaKnown RBP1.84□□□□□ -2.11
VPS41-210ENST00000462429 DEFB136Q30KP8 78 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 C10orf99Q6UWK7 81 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 ATOH7Q8N100 152 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 PRADC1Q9BSG0 188 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 TTTY13Q9BZ97 58 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 SPANXA1Q9NS26 97 aa1.84□□□□□ -2.11
VPS41-210ENST00000462429 ABCA2Q9BZC7 2435 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 RELNP78509 3460 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 DOPEY2Q9Y3R5 2298 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 USP9YO00507 2555 aaPredicted RBP1.83□□□□□ -2.12
VPS41-210ENST00000462429 USP9XQ93008 2570 aaPredicted RBP1.83□□□□□ -2.12
VPS41-210ENST00000462429 HRNRQ86YZ3 2850 aaPredicted RBP1.83□□□□□ -2.12
VPS41-210ENST00000462429 USP24Q9UPU5 2620 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 TRBV7-3A0A075B6L6 115 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 TRGV2A0A075B6R0 118 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 TRGV1A0A0A0MS02 117 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 TRAV4A0A0B4J268 109 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 MYMXA0A1B0GTQ4 84 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 C11orf86A6NJI1 115 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 KNCNA6PVL3 124 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 CCL25O15444 150 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 SMIM13P0DJ93 91 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 PRB4P10163 310 aaPredicted RBP1.83□□□□□ -2.12
VPS41-210ENST00000462429 ZNF25P17030 456 aaPredicted RBP1.83□□□□□ -2.12
VPS41-210ENST00000462429 HINT1P49773 126 aaPredicted RBP1.83□□□□□ -2.12
VPS41-210ENST00000462429 KRTAP12-3P60328 96 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 TMEM170BQ5T4T1 132 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 CFAP126Q5VTH2 177 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 SFTA2Q6UW10 78 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 PLEKHB2Q96CS7 222 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 TIMM21Q9BVV7 248 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 SNHG12Q9BXW3 62 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 MRPL35Q9NZE8 188 aaKnown RBP1.83□□□□□ -2.12
VPS41-210ENST00000462429 HHLA3Q9XRX5 114 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 PTPN13Q12923 2485 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 COL12A1Q99715 3063 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 LRRK2Q5S007 2527 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 TACC2O95359 2948 aa1.83□□□□□ -2.12
VPS41-210ENST00000462429 ITPR1Q14643 2758 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 TRBV25-1A0A075B6N4 114 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.82□□□□□ -2.12
VPS41-210ENST00000462429 TRGV4A0A0C4DH28 118 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 A0A1B0GV90 55 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 TRBV6-4A0A1B0GX49 114 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 IGIPA6NJ69 53 aa1.82□□□□□ -2.12
VPS41-210ENST00000462429 TMEM238C9JI98 176 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms