RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 URB1O60287 2271 aaKnown RBP-0.38□□□□□ -2.47
USP40-209ENST00000452724 ATRQ13535 2644 aa-0.38□□□□□ -2.47
USP40-209ENST00000452724 CUL7Q14999 1698 aa-0.38□□□□□ -2.47
USP40-209ENST00000452724 ZFHX3Q15911 3703 aa-0.38□□□□□ -2.47
USP40-209ENST00000452724 CCDC141Q6ZP82 1450 aa-0.39□□□□□ -2.47
USP40-209ENST00000452724 C7orf77A4D0Y5 90 aa-0.39□□□□□ -2.47
USP40-209ENST00000452724 FXYD6Q9H0Q3 95 aa-0.39□□□□□ -2.47
USP40-209ENST00000452724 WNK1Q9H4A3 2382 aa-0.39□□□□□ -2.47
USP40-209ENST00000452724 TRBV25-1A0A075B6N4 114 aa-0.4□□□□□ -2.47
USP40-209ENST00000452724 H3BQF6 201 aa-0.4□□□□□ -2.47
USP40-209ENST00000452724 M0R2T5 61 aa-0.4□□□□□ -2.47
USP40-209ENST00000452724 S100PP25815 95 aa-0.4□□□□□ -2.47
USP40-209ENST00000452724 CACFD1Q9UGQ2 172 aa-0.4□□□□□ -2.47
USP40-209ENST00000452724 ABCC5O15440 1437 aa-0.4□□□□□ -2.47
USP40-209ENST00000452724 DCHS2Q6V1P9 2916 aa-0.41□□□□□ -2.47
USP40-209ENST00000452724 PLEKHH2Q8IVE3 1493 aa-0.41□□□□□ -2.47
USP40-209ENST00000452724 HECTD4Q9Y4D8 3996 aa-0.41□□□□□ -2.47
USP40-209ENST00000452724 A0A1B0GU69 56 aa-0.41□□□□□ -2.48
USP40-209ENST00000452724 MPC2O95563 127 aa-0.41□□□□□ -2.48
USP40-209ENST00000452724 KLK9Q2XQG4 91 aa-0.41□□□□□ -2.48
USP40-209ENST00000452724 CRIPTQ9P021 101 aa-0.41□□□□□ -2.48
USP40-209ENST00000452724 ZANQ9Y493 2812 aa-0.41□□□□□ -2.48
USP40-209ENST00000452724 NCOA3Q9Y6Q9 1424 aa-0.41□□□□□ -2.48
USP40-209ENST00000452724 A0A087WVE0 104 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 CPSF4LA6NMK7 179 aaKnown RBP-0.42□□□□□ -2.48
USP40-209ENST00000452724 PMCHL1Q16048 86 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 C6orf201Q7Z4U5 140 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 TRGV9Q99603 122 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 ACANP16112 2415 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 A0A0G2JMZ2 1700 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 SPHKAPQ2M3C7 1700 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 KIAA0556O60303 1618 aa-0.42□□□□□ -2.48
USP40-209ENST00000452724 BTAF1O14981 1849 aa-0.43□□□□□ -2.48
USP40-209ENST00000452724 A0A0G2JND7 137 aa-0.43□□□□□ -2.48
USP40-209ENST00000452724 TMEM218A2RU14 115 aa-0.43□□□□□ -2.48
USP40-209ENST00000452724 GNGT2O14610 69 aa-0.43□□□□□ -2.48
USP40-209ENST00000452724 PSMG4Q5JS54 123 aa-0.43□□□□□ -2.48
USP40-209ENST00000452724 APLNQ9ULZ1 77 aa-0.43□□□□□ -2.48
USP40-209ENST00000452724 SETXQ7Z333 2677 aaKnown RBP-0.43□□□□□ -2.48
USP40-209ENST00000452724 DNAJC13O75165 2243 aa-0.44□□□□□ -2.48
USP40-209ENST00000452724 MUC2Q02817 5179 aa-0.44□□□□□ -2.48
USP40-209ENST00000452724 EDC4Q6P2E9 1401 aaKnown RBP-0.44□□□□□ -2.48
USP40-209ENST00000452724 H0Y9P7 68 aa-0.44□□□□□ -2.48
USP40-209ENST00000452724 H7BZZ5 65 aa-0.44□□□□□ -2.48
USP40-209ENST00000452724 TCEAL7Q9BRU2 100 aa-0.44□□□□□ -2.48
USP40-209ENST00000452724 PRDM15P57071 1507 aaPredicted RBP-0.44□□□□□ -2.48
USP40-209ENST00000452724 TENM2Q9NT68 2774 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 TSC2P49815 1807 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 COL4A6Q14031 1691 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 IQSEC2Q5JU85 1478 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 TRAV30A0A087WSZ9 112 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 I3L3M4 83 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 ARMS2P0C7Q2 107 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 C14orf144Q96I85 54 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 SRRM2Q9UQ35 2752 aaKnown RBP-0.45□□□□□ -2.48
USP40-209ENST00000452724 XRN1Q8IZH2 1706 aaKnown RBP-0.45□□□□□ -2.48
USP40-209ENST00000452724 ZFYVE16Q7Z3T8 1539 aa-0.45□□□□□ -2.48
USP40-209ENST00000452724 TOP2BQ02880 1626 aa-0.46□□□□□ -2.48
USP40-209ENST00000452724 NLRP1Q9C000 1473 aa-0.46□□□□□ -2.48
USP40-209ENST00000452724 MLH3Q9UHC1 1453 aa-0.46□□□□□ -2.48
USP40-209ENST00000452724 GNGT1P63211 74 aa-0.46□□□□□ -2.48
USP40-209ENST00000452724 HMGN3Q15651 99 aa-0.46□□□□□ -2.48
USP40-209ENST00000452724 FLNBO75369 2602 aaKnown RBP-0.46□□□□□ -2.48
USP40-209ENST00000452724 COL6A3P12111 3177 aa-0.46□□□□□ -2.48
USP40-209ENST00000452724 NKTRP30414 1462 aaKnown RBP-0.47□□□□□ -2.48
USP40-209ENST00000452724 ATOX1O00244 68 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 MT-ATP8P03928 68 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 UQCRHP07919 91 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 LINC00032P0C843 101 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 ALKAL2Q6UX46 152 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 DEFB107AQ8IZN7 70 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 SERP2Q8N6R1 65 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 AP4S1Q9Y587 144 aa-0.47□□□□□ -2.48
USP40-209ENST00000452724 PRKDCP78527 4128 aaKnown RBP-0.48□□□□□ -2.49
USP40-209ENST00000452724 KRTAP19-7Q3SYF9 63 aa-0.48□□□□□ -2.49
USP40-209ENST00000452724 PMCHL2Q9BQD1 86 aa-0.48□□□□□ -2.49
USP40-209ENST00000452724 TCHHQ07283 1943 aa-0.48□□□□□ -2.49
USP40-209ENST00000452724 SCN7AQ01118 1682 aa-0.49□□□□□ -2.49
USP40-209ENST00000452724 MUC12Q9UKN1 5478 aa-0.49□□□□□ -2.49
USP40-209ENST00000452724 CCL22O00626 93 aa-0.49□□□□□ -2.49
USP40-209ENST00000452724 ASIPP42127 132 aa-0.49□□□□□ -2.49
USP40-209ENST00000452724 H1FX-AS1Q4G0G2 97 aa-0.49□□□□□ -2.49
USP40-209ENST00000452724 ACBD7Q8N6N7 88 aa-0.49□□□□□ -2.49
USP40-209ENST00000452724 ABCC2Q92887 1545 aa-0.49□□□□□ -2.49
USP40-209ENST00000452724 CNOT1A5YKK6 2376 aaKnown RBP-0.49□□□□□ -2.49
USP40-209ENST00000452724 RBP2P50120 134 aa-0.5□□□□□ -2.49
USP40-209ENST00000452724 S100A10P60903 97 aa-0.5□□□□□ -2.49
USP40-209ENST00000452724 DPY30Q9C005 99 aa-0.5□□□□□ -2.49
USP40-209ENST00000452724 ANKRD36BQ8N2N9 1353 aa-0.5□□□□□ -2.49
USP40-209ENST00000452724 TEX14Q8IWB6 1497 aa-0.5□□□□□ -2.49
USP40-209ENST00000452724 RAPGEF2Q9Y4G8 1499 aa-0.5□□□□□ -2.49
USP40-209ENST00000452724 SLIT1O75093 1534 aa-0.51□□□□□ -2.49
USP40-209ENST00000452724 DEFB135Q30KP9 77 aa-0.51□□□□□ -2.49
USP40-209ENST00000452724 C9orf62Q8N4C0 152 aa-0.51□□□□□ -2.49
USP40-209ENST00000452724 MRPL34Q9BQ48 92 aaKnown RBP-0.51□□□□□ -2.49
USP40-209ENST00000452724 CC2D2AQ9P2K1 1620 aa-0.51□□□□□ -2.49
USP40-209ENST00000452724 LRP1BQ9NZR2 4599 aa-0.52□□□□□ -2.49
USP40-209ENST00000452724 NUP188Q5SRE5 1749 aa-0.52□□□□□ -2.49
USP40-209ENST00000452724 ATP6V1G2-DDX39BF2Z307 99 aa-0.52□□□□□ -2.49
USP40-209ENST00000452724 SPRR2AP35326 72 aa-0.52□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms