RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 SND1-IT1Q9HBX3 110 aa11.47□□□□□ -0.57
CLCNKA-203ENST00000439316 IGKV3OR2-268A0A0C4DH90 116 aa11.46□□□□□ -0.58
CLCNKA-203ENST00000439316 A0A087WZ39 114 aa11.45□□□□□ -0.58
CLCNKA-203ENST00000439316 CHCHD5Q9BSY4 110 aa11.45□□□□□ -0.58
CLCNKA-203ENST00000439316 KRTAP24-1Q3LI83 254 aa11.45□□□□□ -0.58
CLCNKA-203ENST00000439316 IBA57-AS1B1ANH7 110 aa11.44□□□□□ -0.58
CLCNKA-203ENST00000439316 CCL18P55774 89 aa11.43□□□□□ -0.58
CLCNKA-203ENST00000439316 LINC00158P58513 81 aa11.43□□□□□ -0.58
CLCNKA-203ENST00000439316 SPATA3Q8NHX4 192 aa11.43□□□□□ -0.58
CLCNKA-203ENST00000439316 CCDC179H3BU77 68 aa11.43□□□□□ -0.58
CLCNKA-203ENST00000439316 B5MCH6 92 aa11.42□□□□□ -0.58
CLCNKA-203ENST00000439316 SDIM1Q6ZPB5 146 aa11.42□□□□□ -0.58
CLCNKA-203ENST00000439316 SMCR5Q8TEV8 140 aa11.42□□□□□ -0.58
CLCNKA-203ENST00000439316 COL6A5A8TX70 2615 aa11.42□□□□□ -0.58
CLCNKA-203ENST00000439316 LINC00612Q8N6U2 182 aa11.41□□□□□ -0.58
CLCNKA-203ENST00000439316 SMIM11BQ8TCY0 68 aa11.41□□□□□ -0.58
CLCNKA-203ENST00000439316 LINC00959A0A1B0GUT2 108 aa11.41□□□□□ -0.58
CLCNKA-203ENST00000439316 MALP21145 153 aa11.41□□□□□ -0.58
CLCNKA-203ENST00000439316 KIR2DL5BQ8NHK3 375 aa11.41□□□□□ -0.58
CLCNKA-203ENST00000439316 IMUPQ9GZP8 106 aa11.41□□□□□ -0.58
CLCNKA-203ENST00000439316 Q9HAA7 133 aa11.41□□□□□ -0.58
CLCNKA-203ENST00000439316 INAFM2P0DMQ5 153 aa11.4□□□□□ -0.58
CLCNKA-203ENST00000439316 C5orf38Q86SI9 138 aa11.4□□□□□ -0.58
CLCNKA-203ENST00000439316 LINC00643Q86TS7 51 aa11.4□□□□□ -0.58
CLCNKA-203ENST00000439316 SS18L2Q9UHA2 77 aa11.39□□□□□ -0.59
CLCNKA-203ENST00000439316 A0A087WYN8 130 aa11.38□□□□□ -0.59
CLCNKA-203ENST00000439316 H0YGX0 51 aa11.37□□□□□ -0.59
CLCNKA-203ENST00000439316 DEFB130BP0DP73 79 aa11.37□□□□□ -0.59
CLCNKA-203ENST00000439316 DEFB130AP0DP74 79 aa11.37□□□□□ -0.59
CLCNKA-203ENST00000439316 PFN2P35080 140 aa11.37□□□□□ -0.59
CLCNKA-203ENST00000439316 GYPEP15421 78 aa11.36□□□□□ -0.59
CLCNKA-203ENST00000439316 A0A1B0GUV1 79 aa11.36□□□□□ -0.59
CLCNKA-203ENST00000439316 DNAL4O96015 105 aa11.36□□□□□ -0.59
CLCNKA-203ENST00000439316 C9orf66Q5T8R8 295 aa11.36□□□□□ -0.59
CLCNKA-203ENST00000439316 PKD1L1Q8TDX9 2849 aa11.35□□□□□ -0.59
CLCNKA-203ENST00000439316 PAX4O43316 350 aa11.34□□□□□ -0.59
CLCNKA-203ENST00000439316 SS18Q15532 418 aa11.34□□□□□ -0.59
CLCNKA-203ENST00000439316 C6orf226Q5I0X4 101 aa11.34□□□□□ -0.59
CLCNKA-203ENST00000439316 GAGE2AQ6NT46 116 aa11.34□□□□□ -0.59
CLCNKA-203ENST00000439316 Q8IZM0 81 aa11.34□□□□□ -0.59
CLCNKA-203ENST00000439316 FAM236AA0A1B0GUQ0 79 aa11.33□□□□□ -0.6
CLCNKA-203ENST00000439316 FAM236BA0A1B0GV22 79 aa11.33□□□□□ -0.6
CLCNKA-203ENST00000439316 XCL1P47992 114 aa11.33□□□□□ -0.6
CLCNKA-203ENST00000439316 LINC01561Q8N1V8 128 aa11.33□□□□□ -0.6
CLCNKA-203ENST00000439316 C3orf56Q8N813 242 aa11.33□□□□□ -0.6
CLCNKA-203ENST00000439316 OBSCN-AS1Q96MR7 158 aa11.32□□□□□ -0.6
CLCNKA-203ENST00000439316 C11orf68Q9H3H3 251 aaKnown RBP11.32□□□□□ -0.6
CLCNKA-203ENST00000439316 X6R8D5 127 aa11.32□□□□□ -0.6
CLCNKA-203ENST00000439316 WFDC9Q8NEX5 89 aa11.31□□□□□ -0.6
CLCNKA-203ENST00000439316 LECT2O14960 151 aa11.3□□□□□ -0.6
CLCNKA-203ENST00000439316 ATP5G1P05496 136 aa11.3□□□□□ -0.6
CLCNKA-203ENST00000439316 CXCL5P42830 114 aa11.3□□□□□ -0.6
CLCNKA-203ENST00000439316 C9orf129Q5T035 196 aaKnown RBP11.3□□□□□ -0.6
CLCNKA-203ENST00000439316 OR13C6PQ8NH95 151 aa11.3□□□□□ -0.6
CLCNKA-203ENST00000439316 PRO0255Q9UI72 69 aa11.3□□□□□ -0.6
CLCNKA-203ENST00000439316 SMIM9A6NGZ8 99 aa11.3□□□□□ -0.6
CLCNKA-203ENST00000439316 CMYA5Q8N3K9 4069 aa11.29□□□□□ -0.6
CLCNKA-203ENST00000439316 CLPSL2Q6UWE3 100 aa11.28□□□□□ -0.6
CLCNKA-203ENST00000439316 C14orf132Q9NPU4 83 aa11.28□□□□□ -0.6
CLCNKA-203ENST00000439316 NBEAL2Q6ZNJ1 2754 aa11.27□□□□□ -0.61
CLCNKA-203ENST00000439316 KLK5Q9Y337 293 aaPredicted RBP11.27□□□□□ -0.61
CLCNKA-203ENST00000439316 A0A096LPF7 62 aa11.25□□□□□ -0.61
CLCNKA-203ENST00000439316 KIAA0087Q14695 138 aa11.25□□□□□ -0.61
CLCNKA-203ENST00000439316 LYRM9A8MSI8 78 aa11.25□□□□□ -0.61
CLCNKA-203ENST00000439316 NANOS2P60321 138 aaKnown RBP11.25□□□□□ -0.61
CLCNKA-203ENST00000439316 CD164L2Q6UWJ8 174 aa11.25□□□□□ -0.61
CLCNKA-203ENST00000439316 LINC00167Q96N53 147 aa11.25□□□□□ -0.61
CLCNKA-203ENST00000439316 ORMDL1Q9P0S3 153 aa11.24□□□□□ -0.61
CLCNKA-203ENST00000439316 NDUFC2O95298 119 aa11.23□□□□□ -0.61
CLCNKA-203ENST00000439316 SLPIP03973 132 aa11.23□□□□□ -0.61
CLCNKA-203ENST00000439316 LINC00269Q8N2A0 174 aa11.23□□□□□ -0.61
CLCNKA-203ENST00000439316 NCR3O14931 201 aa11.23□□□□□ -0.61
CLCNKA-203ENST00000439316 WIPF1O43516 503 aa11.23□□□□□ -0.61
CLCNKA-203ENST00000439316 COX17Q14061 63 aa11.23□□□□□ -0.61
CLCNKA-203ENST00000439316 A0A1B0GX51 115 aa11.22□□□□□ -0.61
CLCNKA-203ENST00000439316 CHCHD10Q8WYQ3 142 aaPredicted RBP11.22□□□□□ -0.61
CLCNKA-203ENST00000439316 HIST1H4AP62805 103 aaKnown RBP11.21□□□□□ -0.61
CLCNKA-203ENST00000439316 OXLD1Q5BKU9 147 aa11.21□□□□□ -0.61
CLCNKA-203ENST00000439316 ANK2Q01484 3957 aa11.21□□□□□ -0.62
CLCNKA-203ENST00000439316 IGHV4-28A0A0C4DH34 117 aa11.21□□□□□ -0.62
CLCNKA-203ENST00000439316 Q6JHZ5 121 aa11.21□□□□□ -0.62
CLCNKA-203ENST00000439316 CFAP161Q6P656 301 aa11.21□□□□□ -0.62
CLCNKA-203ENST00000439316 LINC00846Q9NV44 126 aa11.2□□□□□ -0.62
CLCNKA-203ENST00000439316 PRR3P79522 188 aaKnown RBP11.19□□□□□ -0.62
CLCNKA-203ENST00000439316 C3orf22Q8N5N4 141 aa11.19□□□□□ -0.62
CLCNKA-203ENST00000439316 NOTCH1P46531 2555 aa11.19□□□□□ -0.62
CLCNKA-203ENST00000439316 REG3AQ06141 175 aa11.19□□□□□ -0.62
CLCNKA-203ENST00000439316 Q8N3U1 123 aa11.19□□□□□ -0.62
CLCNKA-203ENST00000439316 UQCRQO14949 82 aa11.18□□□□□ -0.62
CLCNKA-203ENST00000439316 TMEM126AQ9H061 195 aa11.18□□□□□ -0.62
CLCNKA-203ENST00000439316 ANGP03950 147 aaKnown RBP11.17□□□□□ -0.62
CLCNKA-203ENST00000439316 Q8N814 137 aa11.17□□□□□ -0.62
CLCNKA-203ENST00000439316 IGLV10-54A0A075B6I4 117 aa11.17□□□□□ -0.62
CLCNKA-203ENST00000439316 DEFB135Q30KP9 77 aa11.17□□□□□ -0.62
CLCNKA-203ENST00000439316 DEFB4AO15263 64 aa11.16□□□□□ -0.62
CLCNKA-203ENST00000439316 CCKP06307 115 aa11.16□□□□□ -0.62
CLCNKA-203ENST00000439316 C9orf116Q5BN46 136 aaPredicted RBP11.16□□□□□ -0.62
CLCNKA-203ENST00000439316 SVIPQ8NHG7 77 aa11.16□□□□□ -0.62
CLCNKA-203ENST00000439316 LINC00526Q96FQ7 95 aa11.16□□□□□ -0.62
CLCNKA-203ENST00000439316 NBEAL1Q6ZS30 2694 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms