RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 LINC01561Q8N1V8 128 aa5.88□□□□□ -1.47
TMEM39A-202ENST00000438581 NKAPP1Q8N9T2 125 aa5.88□□□□□ -1.47
TMEM39A-202ENST00000438581 COX7B2Q8TF08 81 aa5.88□□□□□ -1.47
TMEM39A-202ENST00000438581 POLR2KP53803 58 aaKnown RBP5.88□□□□□ -1.47
TMEM39A-202ENST00000438581 DSCR8Q96T75 97 aa5.88□□□□□ -1.47
TMEM39A-202ENST00000438581 TIMM17BO60830 172 aa5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 RBM3P98179 157 aaKnown RBP5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 POM121L12Q8N7R1 296 aa5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 TRBV6-4A0A1B0GX49 114 aa5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 Q8N2B8 174 aa5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 OVOL2Q9BRP0 275 aa5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 IGKV2D-26A0A0A0MRZ7 120 aa5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 UBE2AP49459 152 aa5.87□□□□□ -1.47
TMEM39A-202ENST00000438581 TRBV6-8A0A0A6YYG3 113 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 TSHBP01222 138 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 FHL3Q13643 280 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 URB1-AS1Q96HZ7 61 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 TRBV6-5A0A0K0K1A5 114 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 SPAG11BQ08648 103 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 LCA10Q71F78 164 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 STAB1Q9NY15 2570 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 CFC1BP0CG36 223 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 CFC1P0CG37 223 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 LOC400499M0QZD8 3231 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 TACC2O95359 2948 aa5.86□□□□□ -1.47
TMEM39A-202ENST00000438581 SND1-IT1Q9HBX3 110 aa5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 FSHBP01225 129 aa5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 REG3AQ06141 175 aa5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 COL6A5A8TX70 2615 aa5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 HIST1H4AP62805 103 aaKnown RBP5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 CFAP47Q6ZTR5 3102 aa5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 ZNF22P17026 224 aaPredicted RBP5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 HIGD2BQ4VC39 106 aa5.85□□□□□ -1.47
TMEM39A-202ENST00000438581 MIR7-3HGQ8N6C7 128 aa5.84□□□□□ -1.47
TMEM39A-202ENST00000438581 A0A096LNT2 108 aa5.84□□□□□ -1.47
TMEM39A-202ENST00000438581 TRAV13-2A0A0B4J235 113 aa5.84□□□□□ -1.47
TMEM39A-202ENST00000438581 Q6JHZ5 121 aa5.84□□□□□ -1.47
TMEM39A-202ENST00000438581 Q6ZVQ6 151 aa5.84□□□□□ -1.47
TMEM39A-202ENST00000438581 MAPKAPK5-AS1Q8N8E1 139 aa5.84□□□□□ -1.47
TMEM39A-202ENST00000438581 RBM12B-AS1Q9P1G2 102 aa5.84□□□□□ -1.47
TMEM39A-202ENST00000438581 KPRPQ5T749 579 aaPredicted RBP5.83□□□□□ -1.48
TMEM39A-202ENST00000438581 NANOS2P60321 138 aaKnown RBP5.83□□□□□ -1.48
TMEM39A-202ENST00000438581 CHCHD10Q8WYQ3 142 aaPredicted RBP5.83□□□□□ -1.48
TMEM39A-202ENST00000438581 TM2D3Q9BRN9 247 aa5.83□□□□□ -1.48
TMEM39A-202ENST00000438581 A0A0J9YWU9 116 aa5.83□□□□□ -1.48
TMEM39A-202ENST00000438581 TRIAP1O43715 76 aa5.83□□□□□ -1.48
TMEM39A-202ENST00000438581 ASPMQ8IZT6 3477 aa5.82□□□□□ -1.48
TMEM39A-202ENST00000438581 KALRNO60229 2985 aa5.82□□□□□ -1.48
TMEM39A-202ENST00000438581 NDUFA1O15239 70 aa5.82□□□□□ -1.48
TMEM39A-202ENST00000438581 PIK3CD-AS1Q5SR53 167 aa5.82□□□□□ -1.48
TMEM39A-202ENST00000438581 KLK5Q9Y337 293 aaPredicted RBP5.82□□□□□ -1.48
TMEM39A-202ENST00000438581 Q6ZSN1 163 aa5.81□□□□□ -1.48
TMEM39A-202ENST00000438581 UBR5O95071 2799 aaPredicted RBP5.81□□□□□ -1.48
TMEM39A-202ENST00000438581 A0A0J9YXY3 114 aa5.81□□□□□ -1.48
TMEM39A-202ENST00000438581 OXTP01178 125 aa5.81□□□□□ -1.48
TMEM39A-202ENST00000438581 UBE2D4Q9Y2X8 147 aa5.81□□□□□ -1.48
TMEM39A-202ENST00000438581 LRBAP50851 2863 aa5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 SMCPP49901 116 aaPredicted RBP5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 MP68P56378 58 aa5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 C2orf48Q96LS8 159 aa5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 NOTCH1P46531 2555 aa5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 BAHCC1Q9P281 2608 aa5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 KRTAP24-1Q3LI83 254 aa5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 TMEM223A0PJW6 202 aa5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 ZNF73O43830 326 aaPredicted RBP5.8□□□□□ -1.48
TMEM39A-202ENST00000438581 PRR26Q8N8Z3 221 aa5.79□□□□□ -1.48
TMEM39A-202ENST00000438581 ITPR2Q14571 2701 aa5.79□□□□□ -1.48
TMEM39A-202ENST00000438581 IGLV2-18A0A075B6J9 118 aa5.79□□□□□ -1.48
TMEM39A-202ENST00000438581 TRAV10A0A0B4J240 114 aa5.79□□□□□ -1.48
TMEM39A-202ENST00000438581 NCR3O14931 201 aa5.79□□□□□ -1.48
TMEM39A-202ENST00000438581 A0A096LNJ9 63 aa5.79□□□□□ -1.48
TMEM39A-202ENST00000438581 IGIPA6NJ69 53 aa5.79□□□□□ -1.48
TMEM39A-202ENST00000438581 TRBV10-3A0A0K0K1G6 114 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 TMEM256-PLSCR3K7ERE1 68 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 LECT2O14960 151 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 Q6ZTC4 211 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 IGKV2-24A0A0C4DH68 120 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 F8WEM9 126 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 TRAV7A0A075B6U4 112 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 UBE2D1P51668 147 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 FHL2Q14192 279 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 DEFB105AQ8NG35 78 aa5.78□□□□□ -1.48
TMEM39A-202ENST00000438581 H7C423 109 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 KRTAP1-3Q8IUG1 177 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 XAGE1AQ9HD64 81 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 ITPR1Q14643 2758 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 A0A1B0GW54 56 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 SDIM1Q6ZPB5 146 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 CDC42SE2Q9NRR3 84 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 LINC00959A0A1B0GUT2 108 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 C8orf87E5RJ46 101 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 FUSP35637 526 aaKnown RBP eCLIP5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 MIAQ16674 131 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 LELP1Q5T871 98 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 C7orf65Q6ZTY9 151 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 KIF25-AS1Q9Y6Z4 181 aa5.77□□□□□ -1.49
TMEM39A-202ENST00000438581 CLEC2BQ92478 149 aa5.76□□□□□ -1.49
TMEM39A-202ENST00000438581 TRBV30A0A0K0K1B3 111 aa5.76□□□□□ -1.49
TMEM39A-202ENST00000438581 BAALC-AS2P0C853 105 aa5.76□□□□□ -1.49
TMEM39A-202ENST00000438581 IGLV4-60A0A075B6I1 120 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms