RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 SNCGO76070 127 aa5.02□□□□□ -1.61
COL28A1-202ENST00000430711 MIR7-3HGQ8N6C7 128 aa5.02□□□□□ -1.61
COL28A1-202ENST00000430711 NSD1Q96L73 2696 aaPredicted RBP5.01□□□□□ -1.61
COL28A1-202ENST00000430711 H3BT86 120 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 HERVK_113P63121 156 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 DAZ2Q13117 558 aaKnown RBP5.01□□□□□ -1.61
COL28A1-202ENST00000430711 DAZ4Q86SG3 579 aaKnown RBP5.01□□□□□ -1.61
COL28A1-202ENST00000430711 C5orf38Q86SI9 138 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 CSNK1G2-AS1Q8NCQ2 148 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 DAZ3Q9NR90 486 aaKnown RBP5.01□□□□□ -1.61
COL28A1-202ENST00000430711 TMEM262E9PQX1 116 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 COX7A2LO14548 114 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 ATP5G1P05496 136 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 KRTAP10-3P60369 221 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 PRR3P79522 188 aaKnown RBP5.01□□□□□ -1.61
COL28A1-202ENST00000430711 RPL36AP83881 106 aaKnown RBP5.01□□□□□ -1.61
COL28A1-202ENST00000430711 RPL36ALQ969Q0 106 aaKnown RBP5.01□□□□□ -1.61
COL28A1-202ENST00000430711 SMR3AQ99954 134 aa5.01□□□□□ -1.61
COL28A1-202ENST00000430711 TRGV2A0A075B6R0 118 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 SLPIP03973 132 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 PFN2P35080 140 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 DEFB121Q5J5C9 76 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 FAM19A3Q7Z5A8 133 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 LINC01006Q8NI28 216 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 DEFB4AO15263 64 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 IFITM1P13164 125 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 FHL2Q14192 279 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 Q8NDZ9 215 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 YAE1D1Q9NRH1 226 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 ANK2Q01484 3957 aa5□□□□□ -1.61
COL28A1-202ENST00000430711 COX6CP09669 75 aa4.99□□□□□ -1.61
COL28A1-202ENST00000430711 CCL18P55774 89 aa4.99□□□□□ -1.61
COL28A1-202ENST00000430711 TMEM243Q9BU79 118 aa4.99□□□□□ -1.61
COL28A1-202ENST00000430711 HIVEP2P31629 2446 aa4.99□□□□□ -1.61
COL28A1-202ENST00000430711 DEFB130BP0DP73 79 aa4.98□□□□□ -1.61
COL28A1-202ENST00000430711 DEFB130AP0DP74 79 aa4.98□□□□□ -1.61
COL28A1-202ENST00000430711 SMIM11BQ8TCY0 68 aa4.98□□□□□ -1.61
COL28A1-202ENST00000430711 IGHV3OR16-9A0A0B4J2B5 98 aa4.98□□□□□ -1.61
COL28A1-202ENST00000430711 BAALC-AS2P0C853 105 aa4.98□□□□□ -1.61
COL28A1-202ENST00000430711 COX7B2Q8TF08 81 aa4.98□□□□□ -1.61
COL28A1-202ENST00000430711 CSDC2Q9Y534 153 aaKnown RBP4.98□□□□□ -1.61
COL28A1-202ENST00000430711 SND1-IT1Q9HBX3 110 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 TRGV4A0A0C4DH28 118 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 TRBV10-1A0A0K0K1A3 114 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 FAM236AA0A1B0GUQ0 79 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 FAM236BA0A1B0GV22 79 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 UBE2L6O14933 153 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 XCL1P47992 114 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 CIRBPQ14011 172 aaKnown RBP4.97□□□□□ -1.61
COL28A1-202ENST00000430711 LINC00482Q8N8I6 264 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 CYSTM1Q9H1C7 97 aa4.97□□□□□ -1.61
COL28A1-202ENST00000430711 TRBV6-8A0A0A6YYG3 113 aa4.96□□□□□ -1.61
COL28A1-202ENST00000430711 LY6G6DO95868 133 aa4.96□□□□□ -1.61
COL28A1-202ENST00000430711 IGLV1-51P01701 117 aa4.96□□□□□ -1.61
COL28A1-202ENST00000430711 LINC00158P58513 81 aa4.96□□□□□ -1.61
COL28A1-202ENST00000430711 SS18Q15532 418 aa4.96□□□□□ -1.61
COL28A1-202ENST00000430711 C9orf116Q5BN46 136 aaPredicted RBP4.96□□□□□ -1.61
COL28A1-202ENST00000430711 C14orf132Q9NPU4 83 aa4.96□□□□□ -1.61
COL28A1-202ENST00000430711 LINC00526Q96FQ7 95 aa4.96□□□□□ -1.62
COL28A1-202ENST00000430711 IGLV10-54A0A075B6I4 117 aa4.95□□□□□ -1.62
COL28A1-202ENST00000430711 NCR3O14931 201 aa4.95□□□□□ -1.62
COL28A1-202ENST00000430711 NANOS2P60321 138 aaKnown RBP4.95□□□□□ -1.62
COL28A1-202ENST00000430711 GAGE2AQ6NT46 116 aa4.95□□□□□ -1.62
COL28A1-202ENST00000430711 KLK5Q9Y337 293 aaPredicted RBP4.95□□□□□ -1.62
COL28A1-202ENST00000430711 TENM3Q9P273 2699 aa4.95□□□□□ -1.62
COL28A1-202ENST00000430711 TRBV7-7A0A0K0K1E9 115 aa4.95□□□□□ -1.62
COL28A1-202ENST00000430711 Q6Q795 121 aa4.95□□□□□ -1.62
COL28A1-202ENST00000430711 A0A087WVE0 104 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 TRAV25A0A0B4J276 109 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 LINC00959A0A1B0GUT2 108 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 FAM240AA0A1B0GVK7 77 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 TRBV6-4A0A1B0GX49 114 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 LECT2O14960 151 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 CRPP02741 224 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 RPL28P46779 137 aaKnown RBP4.94□□□□□ -1.62
COL28A1-202ENST00000430711 C16orf74Q96GX8 76 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 GYPEP15421 78 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 SDIM1Q6ZPB5 146 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 OVOL2Q9BRP0 275 aa4.94□□□□□ -1.62
COL28A1-202ENST00000430711 A0A087WZ39 114 aa4.93□□□□□ -1.62
COL28A1-202ENST00000430711 TRACP01848 142 aa4.93□□□□□ -1.62
COL28A1-202ENST00000430711 MALP21145 153 aa4.93□□□□□ -1.62
COL28A1-202ENST00000430711 X6R8D5 127 aa4.93□□□□□ -1.62
COL28A1-202ENST00000430711 IGKV3D-7A0A0C4DH55 119 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 HERV-K104P63124 156 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 LINC00846Q9NV44 126 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 INAFM1C9JVW0 142 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 PAX4O43316 350 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 LRRC75A-AS1Q8N1F1 130 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 C6orf223Q8N319 242 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 SMIM20Q8N5G0 67 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 OR13C6PQ8NH95 151 aa4.92□□□□□ -1.62
COL28A1-202ENST00000430711 C10orf25Q5T742 122 aa4.91□□□□□ -1.62
COL28A1-202ENST00000430711 WFDC9Q8NEX5 89 aa4.91□□□□□ -1.62
COL28A1-202ENST00000430711 CELA1Q9UNI1 258 aa4.91□□□□□ -1.62
COL28A1-202ENST00000430711 M0R2N4 97 aa4.91□□□□□ -1.62
COL28A1-202ENST00000430711 LINC00269Q8N2A0 174 aa4.91□□□□□ -1.62
COL28A1-202ENST00000430711 TMEM86BQ8N661 226 aa4.91□□□□□ -1.62
COL28A1-202ENST00000430711 KIAA0087Q14695 138 aa4.9□□□□□ -1.62
COL28A1-202ENST00000430711 RNASE1P07998 156 aaKnown RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms