RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 LAMA4Q16363 1823 aa1.75□□□□□ -2.13
CCDC88A-206ENST00000430086 SMIM13P0DJ93 91 aa1.74□□□□□ -2.13
CCDC88A-206ENST00000430086 C6orf201Q7Z4U5 140 aa1.74□□□□□ -2.13
CCDC88A-206ENST00000430086 MYO7AQ13402 2215 aa1.74□□□□□ -2.13
CCDC88A-206ENST00000430086 ATP5EP2Q5VTU8 51 aa1.73□□□□□ -2.13
CCDC88A-206ENST00000430086 KNDC1Q76NI1 1749 aa1.73□□□□□ -2.13
CCDC88A-206ENST00000430086 FCGBPQ9Y6R7 5405 aaPredicted RBP1.73□□□□□ -2.13
CCDC88A-206ENST00000430086 KIF20BQ96Q89 1820 aa1.73□□□□□ -2.13
CCDC88A-206ENST00000430086 UMAD1C9J7I0 102 aa1.72□□□□□ -2.13
CCDC88A-206ENST00000430086 DEFB121Q5J5C9 76 aa1.72□□□□□ -2.13
CCDC88A-206ENST00000430086 PLAC8Q9NZF1 115 aa1.72□□□□□ -2.13
CCDC88A-206ENST00000430086 ERCC6L2Q5T890 1561 aa1.72□□□□□ -2.13
CCDC88A-206ENST00000430086 SHPRHQ149N8 1683 aa1.71□□□□□ -2.14
CCDC88A-206ENST00000430086 A0A1B0GU69 56 aa1.71□□□□□ -2.14
CCDC88A-206ENST00000430086 DNMBPQ6XZF7 1577 aa1.71□□□□□ -2.14
CCDC88A-206ENST00000430086 NKTRP30414 1462 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 ATP7BP35670 1465 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 ABCA8O94911 1581 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 SPINK7P58062 85 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 SSBP3-AS1Q7Z2R9 100 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 LRRIQ1Q96JM4 1722 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 CRYBG1Q9Y4K1 1723 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 C5P01031 1676 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 UGGT2Q9NYU1 1516 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 DNAJC13O75165 2243 aa1.7□□□□□ -2.14
CCDC88A-206ENST00000430086 KMT2BQ9UMN6 2715 aaPredicted RBP1.69□□□□□ -2.14
CCDC88A-206ENST00000430086 CLIP1P30622 1438 aa1.69□□□□□ -2.14
CCDC88A-206ENST00000430086 A0A087WXM4 84 aa1.69□□□□□ -2.14
CCDC88A-206ENST00000430086 A0A0D9SFI3 127 aa1.69□□□□□ -2.14
CCDC88A-206ENST00000430086 NDUFB1O75438 58 aa1.69□□□□□ -2.14
CCDC88A-206ENST00000430086 XRN1Q8IZH2 1706 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-206ENST00000430086 KDM3BQ7LBC6 1761 aa1.68□□□□□ -2.14
CCDC88A-206ENST00000430086 URB2Q14146 1524 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-206ENST00000430086 TMEM131LA2VDJ0 1609 aa1.68□□□□□ -2.14
CCDC88A-206ENST00000430086 LRP6O75581 1613 aa1.68□□□□□ -2.14
CCDC88A-206ENST00000430086 TARBP1Q13395 1621 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-206ENST00000430086 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
CCDC88A-206ENST00000430086 DUOX2Q9NRD8 1548 aa1.67□□□□□ -2.14
CCDC88A-206ENST00000430086 TRBV7-4A0A0J9YYF1 115 aa1.67□□□□□ -2.14
CCDC88A-206ENST00000430086 SAMD9Q5K651 1589 aa1.67□□□□□ -2.14
CCDC88A-206ENST00000430086 RGPD8O14715 1765 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-206ENST00000430086 RGPD5Q99666 1765 aa1.67□□□□□ -2.14
CCDC88A-206ENST00000430086 NAV3Q8IVL0 2385 aa1.66□□□□□ -2.14
CCDC88A-206ENST00000430086 ALKQ9UM73 1620 aa1.66□□□□□ -2.14
CCDC88A-206ENST00000430086 CADP27708 2225 aa1.66□□□□□ -2.14
CCDC88A-206ENST00000430086 ROS1P08922 2347 aa1.65□□□□□ -2.15
CCDC88A-206ENST00000430086 IFI27P40305 119 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-206ENST00000430086 DEFB112Q30KQ8 113 aa1.65□□□□□ -2.15
CCDC88A-206ENST00000430086 HEPN1Q6WQI6 88 aa1.65□□□□□ -2.15
CCDC88A-206ENST00000430086 C10orf95Q9H7T3 257 aa1.65□□□□□ -2.15
CCDC88A-206ENST00000430086 A0A0G2JMZ2 1700 aa1.65□□□□□ -2.15
CCDC88A-206ENST00000430086 CACNA1CQ13936 2221 aa1.64□□□□□ -2.15
CCDC88A-206ENST00000430086 TENM1Q9UKZ4 2725 aa1.64□□□□□ -2.15
CCDC88A-206ENST00000430086 COL6A6A6NMZ7 2263 aa1.64□□□□□ -2.15
CCDC88A-206ENST00000430086 JMJD1CQ15652 2540 aa1.64□□□□□ -2.15
CCDC88A-206ENST00000430086 ASXL3Q9C0F0 2248 aa1.64□□□□□ -2.15
CCDC88A-206ENST00000430086 PPRC1Q5VV67 1664 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-206ENST00000430086 SCN11AQ9UI33 1791 aa1.63□□□□□ -2.15
CCDC88A-206ENST00000430086 SETBP1Q9Y6X0 1596 aa1.63□□□□□ -2.15
CCDC88A-206ENST00000430086 COX6A2Q02221 97 aa1.62□□□□□ -2.15
CCDC88A-206ENST00000430086 CNFNQ9BYD5 112 aa1.62□□□□□ -2.15
CCDC88A-206ENST00000430086 ADAMTS12P58397 1594 aa1.62□□□□□ -2.15
CCDC88A-206ENST00000430086 KIAA0556O60303 1618 aa1.62□□□□□ -2.15
CCDC88A-206ENST00000430086 ZFHX3Q15911 3703 aa1.62□□□□□ -2.15
CCDC88A-206ENST00000430086 HELZ2Q9BYK8 2649 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 PKD1L3Q7Z443 1732 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 MYO5CQ9NQX4 1742 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 PIGYQ3MUY2 71 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 Q5BKY6 102 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 WFDC9Q8NEX5 89 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 GAFA1Q96PS6 74 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 TP53AIP1Q9HCN2 124 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 NHSL1Q5SYE7 1610 aa1.61□□□□□ -2.15
CCDC88A-206ENST00000430086 IQGAP3Q86VI3 1631 aa1.6□□□□□ -2.15
CCDC88A-206ENST00000430086 LINC00959A0A1B0GUT2 108 aa1.6□□□□□ -2.15
CCDC88A-206ENST00000430086 KRTAP10-4P60372 401 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-206ENST00000430086 RGPD2P0DJD1 1756 aa1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 PAPPA2Q9BXP8 1791 aa1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 PLXNB2O15031 1838 aa1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 PIK3C2BO00750 1634 aa1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 ZC3H13Q5T200 1668 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 TRAV21A0A0B4J279 112 aa1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 A0A0D9SG42 100 aa1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 RPL38P63173 70 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-206ENST00000430086 LRRC7Q96NW7 1537 aa1.59□□□□□ -2.16
CCDC88A-206ENST00000430086 AHCTF1Q8WYP5 2266 aa1.59□□□□□ -2.16
CCDC88A-206ENST00000430086 LTN1O94822 1766 aa1.57□□□□□ -2.16
CCDC88A-206ENST00000430086 TULP4Q9NRJ4 1543 aa1.57□□□□□ -2.16
CCDC88A-206ENST00000430086 H3BVH4 76 aa1.57□□□□□ -2.16
CCDC88A-206ENST00000430086 ANKRD36A6QL64 1941 aa1.56□□□□□ -2.16
CCDC88A-206ENST00000430086 HMGA1P17096 107 aaKnown RBP1.56□□□□□ -2.16
CCDC88A-206ENST00000430086 S100ZQ8WXG8 99 aa1.56□□□□□ -2.16
CCDC88A-206ENST00000430086 USMG5Q96IX5 58 aa1.56□□□□□ -2.16
CCDC88A-206ENST00000430086 PRO0255Q9UI72 69 aa1.56□□□□□ -2.16
CCDC88A-206ENST00000430086 LRRC37AA6NMS7 1700 aa1.56□□□□□ -2.16
CCDC88A-206ENST00000430086 COX7BP24311 80 aa1.55□□□□□ -2.16
CCDC88A-206ENST00000430086 HFM1A2PYH4 1435 aa1.55□□□□□ -2.16
CCDC88A-206ENST00000430086 GOLGA4Q13439 2230 aaKnown RBP1.55□□□□□ -2.16
CCDC88A-206ENST00000430086 EFCAB5A4FU69 1503 aa1.55□□□□□ -2.16
CCDC88A-206ENST00000430086 CEP170BQ9Y4F5 1589 aaPredicted RBP1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms