RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 C10orf113Q5VZT2 155 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 UNQ6190/PRO20217Q6UXQ8 127 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 ZCCHC13Q8WW36 166 aaKnown RBP1.81□□□□□ -2.12
SF3B1-205ENST00000424674 NHSQ6T4R5 1651 aa1.8□□□□□ -2.12
SF3B1-205ENST00000424674 CFAP43Q8NDM7 1665 aa1.8□□□□□ -2.12
SF3B1-205ENST00000424674 SPINK7P58062 85 aa1.8□□□□□ -2.12
SF3B1-205ENST00000424674 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.8□□□□□ -2.12
SF3B1-205ENST00000424674 FXYD6Q9H0Q3 95 aa1.8□□□□□ -2.12
SF3B1-205ENST00000424674 DIP2AQ14689 1571 aa1.8□□□□□ -2.12
SF3B1-205ENST00000424674 PHRF1Q9P1Y6 1649 aaKnown RBP1.8□□□□□ -2.12
SF3B1-205ENST00000424674 COL4A1P02462 1669 aa1.8□□□□□ -2.12
SF3B1-205ENST00000424674 BRWD1Q9NSI6 2320 aa1.79□□□□□ -2.12
SF3B1-205ENST00000424674 TRAV21A0A0B4J279 112 aa1.79□□□□□ -2.12
SF3B1-205ENST00000424674 LINC01549A6NIU2 74 aa1.79□□□□□ -2.12
SF3B1-205ENST00000424674 KRTAP5-8O75690 187 aa1.79□□□□□ -2.12
SF3B1-205ENST00000424674 PLAC4Q8WY50 150 aa1.79□□□□□ -2.12
SF3B1-205ENST00000424674 CLASP1Q7Z460 1538 aa1.79□□□□□ -2.12
SF3B1-205ENST00000424674 ALS2Q96Q42 1657 aa1.79□□□□□ -2.12
SF3B1-205ENST00000424674 MDC1Q14676 2089 aaKnown RBP1.79□□□□□ -2.12
SF3B1-205ENST00000424674 IFT172Q9UG01 1749 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 C5P01031 1676 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 LRP6O75581 1613 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 LAMC1P11047 1609 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 CICQ96RK0 1608 aaPredicted RBP1.78□□□□□ -2.12
SF3B1-205ENST00000424674 SAMD9Q5K651 1589 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 VWDEQ8N2E2 1590 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 TRBV30A0A0K0K1B3 111 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 TRBV6-1A0A0K0K1D8 114 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 J3QRE1 110 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 PIN1P1O15428 100 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 NREPQ16612 68 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 WFDC9Q8NEX5 89 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 SMIM11BQ8TCY0 68 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 OBSCN-AS1Q96MR7 158 aa1.78□□□□□ -2.12
SF3B1-205ENST00000424674 ZFHX2Q9C0A1 2572 aaPredicted RBP1.78□□□□□ -2.12
SF3B1-205ENST00000424674 TET1Q8NFU7 2136 aa1.78□□□□□ -2.13
SF3B1-205ENST00000424674 LRRC37A2A6NM11 1700 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 PKD1L3Q7Z443 1732 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 ITSN2Q9NZM3 1697 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 A0A096LNT2 108 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 SPINK13Q1W4C9 94 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 MYO7BQ6PIF6 2116 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 Q6ZRX8 168 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 LCE3DQ9BYE3 92 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 ANKRD36A6QL64 1941 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 A0A1B0GUL6 1792 aa1.77□□□□□ -2.13
SF3B1-205ENST00000424674 SHANK1Q9Y566 2161 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 ZNF236Q9UL36 1845 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 LCE6AA0A183 80 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 NCR3O14931 201 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 DEFB112Q30KQ8 113 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 KRTAP13-4Q3LI77 160 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 LINC00575Q6W349 94 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 GAFA1Q96PS6 74 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 MROH2AA6NES4 1674 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 WIZO95785 1651 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 UGGT1Q9NYU2 1555 aa1.76□□□□□ -2.13
SF3B1-205ENST00000424674 SPRR5A0A1B0GTR4 108 aa1.75□□□□□ -2.13
SF3B1-205ENST00000424674 A0A1B0GU69 56 aa1.75□□□□□ -2.13
SF3B1-205ENST00000424674 ABCA4P78363 2273 aa1.75□□□□□ -2.13
SF3B1-205ENST00000424674 TOP2AP11388 1531 aaKnown RBP1.75□□□□□ -2.13
SF3B1-205ENST00000424674 CPS1P31327 1500 aa1.75□□□□□ -2.13
SF3B1-205ENST00000424674 TIAM2Q8IVF5 1701 aa1.74□□□□□ -2.13
SF3B1-205ENST00000424674 NHSL1Q5SYE7 1610 aa1.74□□□□□ -2.13
SF3B1-205ENST00000424674 GVQW2A0A096LPI5 108 aaPredicted RBP1.74□□□□□ -2.13
SF3B1-205ENST00000424674 PRRC2BQ5JSZ5 2229 aaKnown RBP1.74□□□□□ -2.13
SF3B1-205ENST00000424674 RTTNQ86VV8 2226 aa1.74□□□□□ -2.13
SF3B1-205ENST00000424674 FN1P02751 2386 aaKnown RBP1.73□□□□□ -2.13
SF3B1-205ENST00000424674 HAMPP81172 84 aa1.73□□□□□ -2.13
SF3B1-205ENST00000424674 DEFB103AP81534 67 aa1.73□□□□□ -2.13
SF3B1-205ENST00000424674 UBL5Q9BZL1 73 aa1.73□□□□□ -2.13
SF3B1-205ENST00000424674 FREM1Q5H8C1 2179 aa1.73□□□□□ -2.13
SF3B1-205ENST00000424674 UBR3Q6ZT12 1888 aa1.73□□□□□ -2.13
SF3B1-205ENST00000424674 EIF2AK4Q9P2K8 1649 aaKnown RBP1.73□□□□□ -2.13
SF3B1-205ENST00000424674 TSC2P49815 1807 aa1.73□□□□□ -2.13
SF3B1-205ENST00000424674 DOCK10Q96BY6 2186 aa1.72□□□□□ -2.13
SF3B1-205ENST00000424674 ABCC6O95255 1503 aa1.72□□□□□ -2.13
SF3B1-205ENST00000424674 LRRC7Q96NW7 1537 aa1.72□□□□□ -2.13
SF3B1-205ENST00000424674 RICTORQ6R327 1708 aa1.72□□□□□ -2.13
SF3B1-205ENST00000424674 PARP4Q9UKK3 1724 aaKnown RBP1.72□□□□□ -2.13
SF3B1-205ENST00000424674 BRD3OSQ6XYD6 125 aa1.72□□□□□ -2.13
SF3B1-205ENST00000424674 COL14A1Q05707 1796 aaKnown RBP1.72□□□□□ -2.13
SF3B1-205ENST00000424674 BCORQ6W2J9 1755 aa1.72□□□□□ -2.13
SF3B1-205ENST00000424674 KIAA0556O60303 1618 aa1.71□□□□□ -2.14
SF3B1-205ENST00000424674 LINC00959A0A1B0GUT2 108 aa1.71□□□□□ -2.14
SF3B1-205ENST00000424674 G3V318 75 aa1.71□□□□□ -2.14
SF3B1-205ENST00000424674 ENHOQ6UWT2 76 aa1.71□□□□□ -2.14
SF3B1-205ENST00000424674 CROCC2H7BZ55 1655 aa1.7□□□□□ -2.14
SF3B1-205ENST00000424674 ZNF831Q5JPB2 1677 aa1.7□□□□□ -2.14
SF3B1-205ENST00000424674 ADCY10Q96PN6 1610 aa1.69□□□□□ -2.14
SF3B1-205ENST00000424674 COX7BP24311 80 aa1.69□□□□□ -2.14
SF3B1-205ENST00000424674 FCER1GP30273 86 aa1.69□□□□□ -2.14
SF3B1-205ENST00000424674 RPL37P61927 97 aaKnown RBP1.69□□□□□ -2.14
SF3B1-205ENST00000424674 RPL38P63173 70 aaKnown RBP1.69□□□□□ -2.14
SF3B1-205ENST00000424674 TOMM5Q8N4H5 51 aa1.69□□□□□ -2.14
SF3B1-205ENST00000424674 BIVM-ERCC5R4GMW8 1640 aa1.69□□□□□ -2.14
SF3B1-205ENST00000424674 E9PCH4 1651 aa1.68□□□□□ -2.14
SF3B1-205ENST00000424674 PAPPA2Q9BXP8 1791 aa1.68□□□□□ -2.14
SF3B1-205ENST00000424674 SERF2P84101 59 aa1.68□□□□□ -2.14
SF3B1-205ENST00000424674 SSBP3-AS1Q7Z2R9 100 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms