RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CCDC179H3BU77 68 aa7.29□□□□□ -1.24
COL6A3-205ENST00000392004 RPL18AQ02543 176 aaKnown RBP7.29□□□□□ -1.24
COL6A3-205ENST00000392004 FHL2Q14192 279 aa7.29□□□□□ -1.24
COL6A3-205ENST00000392004 WFDC10BQ8IUB3 73 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 Q6Q795 121 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 RMI2Q96E14 147 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 DNAJC30Q96LL9 226 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 TRAV8-3A0A0A6YYJ7 113 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 TMEM223A0PJW6 202 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 C20orf203Q8NBC4 194 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 C19orf73Q9NVV2 129 aa7.28□□□□□ -1.24
COL6A3-205ENST00000392004 SEC61GP60059 68 aa7.27□□□□□ -1.25
COL6A3-205ENST00000392004 DAND5Q8N907 189 aa7.27□□□□□ -1.25
COL6A3-205ENST00000392004 COX7A2LO14548 114 aa7.27□□□□□ -1.25
COL6A3-205ENST00000392004 POM121L12Q8N7R1 296 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 B9D2Q9BPU9 175 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 TRBV30A0A0K0K1B3 111 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 NHLRC4P0CG21 123 aaPredicted RBP7.26□□□□□ -1.25
COL6A3-205ENST00000392004 Q8N3U1 123 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 TRBV27A0A0K0K1C4 114 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 TRIAP1O43715 76 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 ZNF22P17026 224 aaPredicted RBP7.26□□□□□ -1.25
COL6A3-205ENST00000392004 C11orf72Q8NBR9 251 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 TMEM126AQ9H061 195 aa7.26□□□□□ -1.25
COL6A3-205ENST00000392004 A0A0J9YXY3 114 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 NUPR2A6NF83 97 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 H3BT86 120 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 S100A7L2Q5SY68 101 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 Q8NAQ8 132 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 Q9H8V8 135 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 VPS13CQ709C8 3753 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 A8MZ25 164 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 GIG44P09565 113 aaPredicted RBP7.25□□□□□ -1.25
COL6A3-205ENST00000392004 KIF25-AS1Q9Y6Z4 181 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 TENM3Q9P273 2699 aa7.25□□□□□ -1.25
COL6A3-205ENST00000392004 TRBV6-5A0A0K0K1A5 114 aa7.24□□□□□ -1.25
COL6A3-205ENST00000392004 LINC00694P0DN24 101 aa7.24□□□□□ -1.25
COL6A3-205ENST00000392004 CHCHD10Q8WYQ3 142 aaPredicted RBP7.24□□□□□ -1.25
COL6A3-205ENST00000392004 NDUFA12Q9UI09 145 aa7.24□□□□□ -1.25
COL6A3-205ENST00000392004 LINC00315P59091 139 aa7.24□□□□□ -1.25
COL6A3-205ENST00000392004 MUC7Q8TAX7 377 aa7.24□□□□□ -1.25
COL6A3-205ENST00000392004 AMELXQ99217 191 aa7.24□□□□□ -1.25
COL6A3-205ENST00000392004 SPAG11BQ08648 103 aa7.24□□□□□ -1.25
COL6A3-205ENST00000392004 IGLV4-60A0A075B6I1 120 aa7.23□□□□□ -1.25
COL6A3-205ENST00000392004 UBE2BP63146 152 aa7.23□□□□□ -1.25
COL6A3-205ENST00000392004 KLK9Q2XQG4 91 aa7.23□□□□□ -1.25
COL6A3-205ENST00000392004 CLEC2BQ92478 149 aa7.22□□□□□ -1.25
COL6A3-205ENST00000392004 HERVK_113P63121 156 aa7.22□□□□□ -1.25
COL6A3-205ENST00000392004 ESRGQ1W209 222 aa7.22□□□□□ -1.25
COL6A3-205ENST00000392004 CDKN2A-AS1Q9UH64 79 aa7.22□□□□□ -1.25
COL6A3-205ENST00000392004 H7C423 109 aa7.22□□□□□ -1.25
COL6A3-205ENST00000392004 IGLV4-3A0A075B6K6 122 aa7.21□□□□□ -1.25
COL6A3-205ENST00000392004 WIPF1O43516 503 aa7.21□□□□□ -1.26
COL6A3-205ENST00000392004 LELP1Q5T871 98 aa7.21□□□□□ -1.26
COL6A3-205ENST00000392004 LYPD5Q6UWN5 251 aa7.21□□□□□ -1.26
COL6A3-205ENST00000392004 FAM19A4Q96LR4 140 aa7.21□□□□□ -1.26
COL6A3-205ENST00000392004 XAGE1AQ9HD64 81 aa7.21□□□□□ -1.26
COL6A3-205ENST00000392004 WWC2-AS2Q96NR7 200 aa7.2□□□□□ -1.26
COL6A3-205ENST00000392004 LRCOL1A6NCL2 159 aa7.2□□□□□ -1.26
COL6A3-205ENST00000392004 GAGE2AQ6NT46 116 aa7.2□□□□□ -1.26
COL6A3-205ENST00000392004 CSDC2Q9Y534 153 aaKnown RBP7.2□□□□□ -1.26
COL6A3-205ENST00000392004 EIF4EBP3O60516 100 aaPredicted RBP7.2□□□□□ -1.26
COL6A3-205ENST00000392004 MIAQ16674 131 aa7.2□□□□□ -1.26
COL6A3-205ENST00000392004 IGHV1-58A0A0C4DH39 117 aa7.19□□□□□ -1.26
COL6A3-205ENST00000392004 J3KT08 172 aa7.19□□□□□ -1.26
COL6A3-205ENST00000392004 FAM240AA0A1B0GVK7 77 aa7.19□□□□□ -1.26
COL6A3-205ENST00000392004 NKAPP1Q8N9T2 125 aa7.19□□□□□ -1.26
COL6A3-205ENST00000392004 CSNK1G2-AS1Q8NCQ2 148 aa7.19□□□□□ -1.26
COL6A3-205ENST00000392004 ACYP1P07311 99 aa7.19□□□□□ -1.26
COL6A3-205ENST00000392004 LST1O00453 97 aa7.18□□□□□ -1.26
COL6A3-205ENST00000392004 EGFEM1PQ0D2K5 195 aa7.18□□□□□ -1.26
COL6A3-205ENST00000392004 SPANXDQ9BXN6 97 aa7.18□□□□□ -1.26
COL6A3-205ENST00000392004 SPANXCQ9NY87 97 aa7.18□□□□□ -1.26
COL6A3-205ENST00000392004 FAM236AA0A1B0GUQ0 79 aa7.18□□□□□ -1.26
COL6A3-205ENST00000392004 FAM236BA0A1B0GV22 79 aa7.18□□□□□ -1.26
COL6A3-205ENST00000392004 FUSP35637 526 aaKnown RBP eCLIP7.18□□□□□ -1.26
COL6A3-205ENST00000392004 PPDPFQ9H3Y8 114 aa7.18□□□□□ -1.26
COL6A3-205ENST00000392004 COPS9Q8WXC6 57 aa7.17□□□□□ -1.26
COL6A3-205ENST00000392004 ADAMTSL4-AS1Q5T5F5 129 aa7.16□□□□□ -1.26
COL6A3-205ENST00000392004 LINC01600Q96MT4 127 aa7.16□□□□□ -1.26
COL6A3-205ENST00000392004 PYGO1Q9Y3Y4 419 aa7.16□□□□□ -1.26
COL6A3-205ENST00000392004 MRPS36P82909 103 aaKnown RBP7.16□□□□□ -1.26
COL6A3-205ENST00000392004 V9GYY9 64 aa7.16□□□□□ -1.26
COL6A3-205ENST00000392004 TINCRA0A1B0GVN0 87 aa7.15□□□□□ -1.27
COL6A3-205ENST00000392004 NDUFA1O15239 70 aa7.15□□□□□ -1.27
COL6A3-205ENST00000392004 TRBV7-7A0A0K0K1E9 115 aa7.14□□□□□ -1.27
COL6A3-205ENST00000392004 COX7B2Q8TF08 81 aa7.14□□□□□ -1.27
COL6A3-205ENST00000392004 IMUPQ9GZP8 106 aa7.14□□□□□ -1.27
COL6A3-205ENST00000392004 LITAFQ99732 161 aa7.14□□□□□ -1.27
COL6A3-205ENST00000392004 LINC00959A0A1B0GUT2 108 aa7.14□□□□□ -1.27
COL6A3-205ENST00000392004 LINC00643Q86TS7 51 aa7.14□□□□□ -1.27
COL6A3-205ENST00000392004 TRRAPQ9Y4A5 3859 aa7.13□□□□□ -1.27
COL6A3-205ENST00000392004 TRACP01848 142 aa7.13□□□□□ -1.27
COL6A3-205ENST00000392004 NTM-AS1Q6ZSK4 140 aa7.13□□□□□ -1.27
COL6A3-205ENST00000392004 TIMM17BO60830 172 aa7.13□□□□□ -1.27
COL6A3-205ENST00000392004 DNAL4O96015 105 aa7.13□□□□□ -1.27
COL6A3-205ENST00000392004 C9orf116Q5BN46 136 aaPredicted RBP7.13□□□□□ -1.27
COL6A3-205ENST00000392004 UBE2D4Q9Y2X8 147 aa7.13□□□□□ -1.27
COL6A3-205ENST00000392004 LINC00588Q9Y4M8 146 aa7.13□□□□□ -1.27
COL6A3-205ENST00000392004 C1orf134Q5TEV5 83 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms