RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ANAPC13Q9BS18 74 aa9.19□□□□□ -0.94
SQSTM1-201ENST00000360718 GYPEP15421 78 aa9.18□□□□□ -0.94
SQSTM1-201ENST00000360718 LINC00308Q8TCZ7 52 aa9.18□□□□□ -0.94
SQSTM1-201ENST00000360718 TRAV8-4A0A0B4J246 113 aa9.17□□□□□ -0.94
SQSTM1-201ENST00000360718 F5H768 121 aa9.17□□□□□ -0.94
SQSTM1-201ENST00000360718 H7C423 109 aa9.17□□□□□ -0.94
SQSTM1-201ENST00000360718 LST1O00453 97 aa9.17□□□□□ -0.94
SQSTM1-201ENST00000360718 HTN3P15516 51 aa9.17□□□□□ -0.94
SQSTM1-201ENST00000360718 HERV-K104P63124 156 aa9.17□□□□□ -0.94
SQSTM1-201ENST00000360718 A0A0J9YWU9 116 aa9.17□□□□□ -0.94
SQSTM1-201ENST00000360718 TRAV13-1A0A0B4J241 112 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 UBE2L6O14933 153 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 SNCGO76070 127 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 LINC00694P0DN24 101 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 CDC42SE2Q9NRR3 84 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 MEGF8Q7Z7M0 2845 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 TEX49A0A1B0GTD5 131 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 SMIM1B2RUZ4 78 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 GAGE6Q13070 117 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 Q6Q795 121 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 DAND5Q8N907 189 aa9.16□□□□□ -0.94
SQSTM1-201ENST00000360718 DNAH9Q9NYC9 4486 aa9.15□□□□□ -0.94
SQSTM1-201ENST00000360718 MEIG1Q5JSS6 88 aa9.15□□□□□ -0.94
SQSTM1-201ENST00000360718 NTM-AS1Q6ZSK4 140 aa9.15□□□□□ -0.94
SQSTM1-201ENST00000360718 CLEC2BQ92478 149 aa9.15□□□□□ -0.94
SQSTM1-201ENST00000360718 TMEM243Q9BU79 118 aa9.15□□□□□ -0.94
SQSTM1-201ENST00000360718 GAGE2BQ13066 116 aa9.15□□□□□ -0.95
SQSTM1-201ENST00000360718 GAGE2EQ4V326 116 aa9.15□□□□□ -0.95
SQSTM1-201ENST00000360718 PPDPFQ9H3Y8 114 aa9.15□□□□□ -0.95
SQSTM1-201ENST00000360718 GAGE2DQ9UEU5 116 aa9.15□□□□□ -0.95
SQSTM1-201ENST00000360718 C11orf45Q8TAV5 145 aa9.14□□□□□ -0.95
SQSTM1-201ENST00000360718 ZNF625Q96I27 306 aaPredicted RBP9.14□□□□□ -0.95
SQSTM1-201ENST00000360718 PRKDCP78527 4128 aaKnown RBP9.12□□□□□ -0.95
SQSTM1-201ENST00000360718 COX7A2LO14548 114 aa9.12□□□□□ -0.95
SQSTM1-201ENST00000360718 MRPL23Q16540 153 aaKnown RBP9.12□□□□□ -0.95
SQSTM1-201ENST00000360718 TRBV6-8A0A0A6YYG3 113 aa9.11□□□□□ -0.95
SQSTM1-201ENST00000360718 A0A0U1RRA0 63 aa9.11□□□□□ -0.95
SQSTM1-201ENST00000360718 Q6ZTC4 211 aa9.11□□□□□ -0.95
SQSTM1-201ENST00000360718 STAB2Q8WWQ8 2551 aa9.11□□□□□ -0.95
SQSTM1-201ENST00000360718 B9D2Q9BPU9 175 aa9.11□□□□□ -0.95
SQSTM1-201ENST00000360718 FAM240AA0A1B0GVK7 77 aa9.1□□□□□ -0.95
SQSTM1-201ENST00000360718 NDUFV3P56181 108 aaKnown RBP9.1□□□□□ -0.95
SQSTM1-201ENST00000360718 NANOS2P60321 138 aaKnown RBP9.1□□□□□ -0.95
SQSTM1-201ENST00000360718 A0A096LPF7 62 aa9.1□□□□□ -0.95
SQSTM1-201ENST00000360718 TTC32Q5I0X7 151 aa9.1□□□□□ -0.95
SQSTM1-201ENST00000360718 H3BNG1 76 aa9.09□□□□□ -0.95
SQSTM1-201ENST00000360718 CHCHD5Q9BSY4 110 aa9.09□□□□□ -0.95
SQSTM1-201ENST00000360718 DEFB131BA0A096LNP1 70 aa9.08□□□□□ -0.96
SQSTM1-201ENST00000360718 NHLRC4P0CG21 123 aaPredicted RBP9.08□□□□□ -0.96
SQSTM1-201ENST00000360718 SOSTDC1Q6X4U4 206 aa9.08□□□□□ -0.96
SQSTM1-201ENST00000360718 C15orf53Q8NAA6 179 aa9.08□□□□□ -0.96
SQSTM1-201ENST00000360718 TRAV13-2A0A0B4J235 113 aa9.07□□□□□ -0.96
SQSTM1-201ENST00000360718 COX7B2Q8TF08 81 aa9.07□□□□□ -0.96
SQSTM1-201ENST00000360718 TRACP01848 142 aa9.07□□□□□ -0.96
SQSTM1-201ENST00000360718 ACYP1P07311 99 aa9.07□□□□□ -0.96
SQSTM1-201ENST00000360718 TRAV10A0A0B4J240 114 aa9.05□□□□□ -0.96
SQSTM1-201ENST00000360718 B5MCH6 92 aa9.05□□□□□ -0.96
SQSTM1-201ENST00000360718 CRPP02741 224 aa9.03□□□□□ -0.96
SQSTM1-201ENST00000360718 TOMM7Q9P0U1 55 aa9.03□□□□□ -0.96
SQSTM1-201ENST00000360718 SS18L2Q9UHA2 77 aa9.03□□□□□ -0.96
SQSTM1-201ENST00000360718 RPL28P46779 137 aaKnown RBP9.03□□□□□ -0.96
SQSTM1-201ENST00000360718 BAALC-AS2P0C853 105 aa9.02□□□□□ -0.96
SQSTM1-201ENST00000360718 MIR7-3HGQ8N6C7 128 aa9.02□□□□□ -0.96
SQSTM1-201ENST00000360718 LINC00158P58513 81 aa9.02□□□□□ -0.97
SQSTM1-201ENST00000360718 LELP1Q5T871 98 aa9.02□□□□□ -0.97
SQSTM1-201ENST00000360718 SND1-IT1Q9HBX3 110 aa9.02□□□□□ -0.97
SQSTM1-201ENST00000360718 IGKV3OR2-268A0A0C4DH90 116 aa9.01□□□□□ -0.97
SQSTM1-201ENST00000360718 A0A087WZ39 114 aa9.01□□□□□ -0.97
SQSTM1-201ENST00000360718 IGHV3OR16-9A0A0B4J2B5 98 aa9.01□□□□□ -0.97
SQSTM1-201ENST00000360718 A0A1B0GUV1 79 aa9.01□□□□□ -0.97
SQSTM1-201ENST00000360718 IBA57-AS1B1ANH7 110 aa9.01□□□□□ -0.97
SQSTM1-201ENST00000360718 LYPD5Q6UWN5 251 aa9.01□□□□□ -0.97
SQSTM1-201ENST00000360718 FBN3Q75N90 2809 aa9□□□□□ -0.97
SQSTM1-201ENST00000360718 IGLV4-60A0A075B6I1 120 aa9□□□□□ -0.97
SQSTM1-201ENST00000360718 TRBV7-7A0A0K0K1E9 115 aa8.99□□□□□ -0.97
SQSTM1-201ENST00000360718 H0YGX0 51 aa8.98□□□□□ -0.97
SQSTM1-201ENST00000360718 INAFM2P0DMQ5 153 aa8.98□□□□□ -0.97
SQSTM1-201ENST00000360718 IMUPQ9GZP8 106 aa8.98□□□□□ -0.97
SQSTM1-201ENST00000360718 CCDC179H3BU77 68 aa8.98□□□□□ -0.97
SQSTM1-201ENST00000360718 LINC00959A0A1B0GUT2 108 aa8.97□□□□□ -0.97
SQSTM1-201ENST00000360718 DNAL4O96015 105 aa8.97□□□□□ -0.97
SQSTM1-201ENST00000360718 SS18Q15532 418 aa8.97□□□□□ -0.97
SQSTM1-201ENST00000360718 LINC00337Q8N6G1 96 aa8.97□□□□□ -0.97
SQSTM1-201ENST00000360718 IGKV2-28A0A075B6P5 120 aa8.96□□□□□ -0.97
SQSTM1-201ENST00000360718 IGKV2D-28P01615 120 aa8.96□□□□□ -0.97
SQSTM1-201ENST00000360718 MALP21145 153 aa8.96□□□□□ -0.97
SQSTM1-201ENST00000360718 CCL18P55774 89 aa8.96□□□□□ -0.97
SQSTM1-201ENST00000360718 C6orf226Q5I0X4 101 aa8.96□□□□□ -0.97
SQSTM1-201ENST00000360718 C5orf38Q86SI9 138 aa8.96□□□□□ -0.97
SQSTM1-201ENST00000360718 FAM218AQ96MZ4 157 aa8.96□□□□□ -0.97
SQSTM1-201ENST00000360718 Q8N3U1 123 aa8.96□□□□□ -0.98
SQSTM1-201ENST00000360718 ANGP03950 147 aaKnown RBP8.95□□□□□ -0.98
SQSTM1-201ENST00000360718 ESRGQ1W209 222 aa8.95□□□□□ -0.98
SQSTM1-201ENST00000360718 LINC00643Q86TS7 51 aa8.95□□□□□ -0.98
SQSTM1-201ENST00000360718 PFN2P35080 140 aa8.94□□□□□ -0.98
SQSTM1-201ENST00000360718 LINC01561Q8N1V8 128 aa8.94□□□□□ -0.98
SQSTM1-201ENST00000360718 SMIM11BQ8TCY0 68 aa8.94□□□□□ -0.98
SQSTM1-201ENST00000360718 CSMD3Q7Z407 3707 aa8.94□□□□□ -0.98
SQSTM1-201ENST00000360718 LINC00269Q8N2A0 174 aa8.93□□□□□ -0.98
SQSTM1-201ENST00000360718 Q8IZM0 81 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms