RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DEFB121Q5J5C9 76 aa8.49□□□□□ -1.05
CLIP3-201ENST00000360535 IGHV3OR16-9A0A0B4J2B5 98 aa8.49□□□□□ -1.05
CLIP3-201ENST00000360535 FLNBO75369 2602 aaKnown RBP8.49□□□□□ -1.05
CLIP3-201ENST00000360535 IGKV3D-7A0A0C4DH55 119 aa8.48□□□□□ -1.05
CLIP3-201ENST00000360535 NCR3O14931 201 aa8.48□□□□□ -1.05
CLIP3-201ENST00000360535 KLK5Q9Y337 293 aaPredicted RBP8.48□□□□□ -1.05
CLIP3-201ENST00000360535 C22orf24Q9Y442 160 aa8.48□□□□□ -1.05
CLIP3-201ENST00000360535 LINC00959A0A1B0GUT2 108 aa8.48□□□□□ -1.05
CLIP3-201ENST00000360535 Q8N3U1 123 aa8.48□□□□□ -1.05
CLIP3-201ENST00000360535 PF4P02776 101 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 RPL28P46779 137 aaKnown RBP8.47□□□□□ -1.05
CLIP3-201ENST00000360535 SDIM1Q6ZPB5 146 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 FAM19A3Q7Z5A8 133 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 LOC107984640A0A0U1RRK4 108 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 IGLV1-51P01701 117 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 LINC00482Q8N8I6 264 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 SMR3AQ99954 134 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 C19orf73Q9NVV2 129 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 TMEM86BQ8N661 226 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 CSNK1G2-AS1Q8NCQ2 148 aa8.47□□□□□ -1.05
CLIP3-201ENST00000360535 LRRC75A-AS1Q8N1F1 130 aa8.46□□□□□ -1.05
CLIP3-201ENST00000360535 ACYP1P07311 99 aa8.46□□□□□ -1.06
CLIP3-201ENST00000360535 HTN3P15516 51 aa8.46□□□□□ -1.06
CLIP3-201ENST00000360535 C9orf116Q5BN46 136 aaPredicted RBP8.45□□□□□ -1.06
CLIP3-201ENST00000360535 LINC00643Q86TS7 51 aa8.45□□□□□ -1.06
CLIP3-201ENST00000360535 LINC00526Q96FQ7 95 aa8.45□□□□□ -1.06
CLIP3-201ENST00000360535 A0A087WZ39 114 aa8.45□□□□□ -1.06
CLIP3-201ENST00000360535 INAFM2P0DMQ5 153 aa8.45□□□□□ -1.06
CLIP3-201ENST00000360535 SS18Q15532 418 aa8.45□□□□□ -1.06
CLIP3-201ENST00000360535 ATRQ13535 2644 aa8.44□□□□□ -1.06
CLIP3-201ENST00000360535 TRBV7-7A0A0K0K1E9 115 aa8.44□□□□□ -1.06
CLIP3-201ENST00000360535 LINC00269Q8N2A0 174 aa8.44□□□□□ -1.06
CLIP3-201ENST00000360535 OVOL2Q9BRP0 275 aa8.44□□□□□ -1.06
CLIP3-201ENST00000360535 IBA57-AS1B1ANH7 110 aa8.44□□□□□ -1.06
CLIP3-201ENST00000360535 ANGP03950 147 aaKnown RBP8.43□□□□□ -1.06
CLIP3-201ENST00000360535 CMC4P56277 68 aaPredicted RBP8.43□□□□□ -1.06
CLIP3-201ENST00000360535 DEFB135Q30KP9 77 aa8.42□□□□□ -1.06
CLIP3-201ENST00000360535 FAM222AQ5U5X8 452 aa8.42□□□□□ -1.06
CLIP3-201ENST00000360535 A0A087WVE0 104 aa8.42□□□□□ -1.06
CLIP3-201ENST00000360535 TMEM126AQ9H061 195 aa8.41□□□□□ -1.06
CLIP3-201ENST00000360535 SPATA3Q8NHX4 192 aa8.41□□□□□ -1.06
CLIP3-201ENST00000360535 H0YGX0 51 aa8.41□□□□□ -1.06
CLIP3-201ENST00000360535 LINC00846Q9NV44 126 aa8.41□□□□□ -1.06
CLIP3-201ENST00000360535 UNC79Q9P2D8 2635 aa8.4□□□□□ -1.06
CLIP3-201ENST00000360535 PDZD2O15018 2839 aa8.39□□□□□ -1.07
CLIP3-201ENST00000360535 HIST1H4AP62805 103 aaKnown RBP8.39□□□□□ -1.07
CLIP3-201ENST00000360535 CXCL5P42830 114 aa8.39□□□□□ -1.07
CLIP3-201ENST00000360535 ORMDL1Q9P0S3 153 aa8.38□□□□□ -1.07
CLIP3-201ENST00000360535 PRO0255Q9UI72 69 aa8.38□□□□□ -1.07
CLIP3-201ENST00000360535 TENM1Q9UKZ4 2725 aa8.38□□□□□ -1.07
CLIP3-201ENST00000360535 C3orf22Q8N5N4 141 aa8.38□□□□□ -1.07
CLIP3-201ENST00000360535 WFDC9Q8NEX5 89 aa8.38□□□□□ -1.07
CLIP3-201ENST00000360535 CHCHD10Q8WYQ3 142 aaPredicted RBP8.38□□□□□ -1.07
CLIP3-201ENST00000360535 KRTAP10-3P60369 221 aa8.37□□□□□ -1.07
CLIP3-201ENST00000360535 KRTAP1-1Q07627 177 aa8.37□□□□□ -1.07
CLIP3-201ENST00000360535 C6orf223Q8N319 242 aa8.37□□□□□ -1.07
CLIP3-201ENST00000360535 IMUPQ9GZP8 106 aa8.37□□□□□ -1.07
CLIP3-201ENST00000360535 hADV29S1A0JD25 119 aa8.36□□□□□ -1.07
CLIP3-201ENST00000360535 S100A7L2Q5SY68 101 aa8.36□□□□□ -1.07
CLIP3-201ENST00000360535 X6R8D5 127 aa8.36□□□□□ -1.07
CLIP3-201ENST00000360535 REG3AQ06141 175 aa8.35□□□□□ -1.07
CLIP3-201ENST00000360535 UQCRQO14949 82 aa8.35□□□□□ -1.07
CLIP3-201ENST00000360535 C6orf99Q4VX62 202 aa8.35□□□□□ -1.07
CLIP3-201ENST00000360535 A0A1B0GX51 115 aa8.35□□□□□ -1.07
CLIP3-201ENST00000360535 Q8IZM0 81 aa8.35□□□□□ -1.07
CLIP3-201ENST00000360535 TEP1Q99973 2627 aaKnown RBP8.34□□□□□ -1.07
CLIP3-201ENST00000360535 DAD1P61803 113 aa8.34□□□□□ -1.07
CLIP3-201ENST00000360535 KIR2DL5BQ8NHK3 375 aa8.34□□□□□ -1.07
CLIP3-201ENST00000360535 UNQ6190/PRO20217Q6UXQ8 127 aa8.33□□□□□ -1.08
CLIP3-201ENST00000360535 FAM19A5Q7Z5A7 132 aaPredicted RBP8.33□□□□□ -1.08
CLIP3-201ENST00000360535 C16orf95Q9H693 158 aa8.33□□□□□ -1.08
CLIP3-201ENST00000360535 C10orf25Q5T742 122 aa8.33□□□□□ -1.08
CLIP3-201ENST00000360535 Q8NDZ9 215 aa8.32□□□□□ -1.08
CLIP3-201ENST00000360535 KLK12Q9UKR0 248 aa8.32□□□□□ -1.08
CLIP3-201ENST00000360535 ANK3Q12955 4377 aaKnown RBP8.32□□□□□ -1.08
CLIP3-201ENST00000360535 J3KT08 172 aa8.32□□□□□ -1.08
CLIP3-201ENST00000360535 HILS1P60008 231 aa8.32□□□□□ -1.08
CLIP3-201ENST00000360535 CELA1Q9UNI1 258 aa8.32□□□□□ -1.08
CLIP3-201ENST00000360535 A0A1B0GUV1 79 aa8.31□□□□□ -1.08
CLIP3-201ENST00000360535 NANOS2P60321 138 aaKnown RBP8.31□□□□□ -1.08
CLIP3-201ENST00000360535 Q8N814 137 aa8.31□□□□□ -1.08
CLIP3-201ENST00000360535 IGHV4-28A0A0C4DH34 117 aa8.31□□□□□ -1.08
CLIP3-201ENST00000360535 RPL18AQ02543 176 aaKnown RBP8.31□□□□□ -1.08
CLIP3-201ENST00000360535 CD164L2Q6UWJ8 174 aa8.31□□□□□ -1.08
CLIP3-201ENST00000360535 TRRAPQ9Y4A5 3859 aa8.31□□□□□ -1.08
CLIP3-201ENST00000360535 OTOGQ6ZRI0 2925 aa8.31□□□□□ -1.08
CLIP3-201ENST00000360535 XAGE1AQ9HD64 81 aa8.3□□□□□ -1.08
CLIP3-201ENST00000360535 LAMTOR3Q9UHA4 124 aa8.3□□□□□ -1.08
CLIP3-201ENST00000360535 KIAA0087Q14695 138 aa8.3□□□□□ -1.08
CLIP3-201ENST00000360535 J3QKU1 62 aa8.3□□□□□ -1.08
CLIP3-201ENST00000360535 SPAG11BQ08648 103 aa8.3□□□□□ -1.08
CLIP3-201ENST00000360535 PKD1L1Q8TDX9 2849 aa8.29□□□□□ -1.08
CLIP3-201ENST00000360535 COX7CP15954 63 aa8.29□□□□□ -1.08
CLIP3-201ENST00000360535 HIVEP1P15822 2718 aa8.29□□□□□ -1.08
CLIP3-201ENST00000360535 TRAV23DV6A0A075B6W5 121 aa8.28□□□□□ -1.08
CLIP3-201ENST00000360535 SMIM9A6NGZ8 99 aa8.28□□□□□ -1.08
CLIP3-201ENST00000360535 DSCR8Q96T75 97 aa8.28□□□□□ -1.08
CLIP3-201ENST00000360535 ATOX1O00244 68 aa8.28□□□□□ -1.08
CLIP3-201ENST00000360535 CYSTM1Q9H1C7 97 aa8.28□□□□□ -1.08
CLIP3-201ENST00000360535 LY6G6DO95868 133 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms