RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 A0A0U1RQV1 116 aa12.85□□□□□ -0.35
COL18A1-202ENST00000355480 IGHV6-1A0A0B4J1U7 121 aa12.84□□□□□ -0.35
COL18A1-202ENST00000355480 LRP4O75096 1905 aa12.84□□□□□ -0.35
COL18A1-202ENST00000355480 FSHBP01225 129 aa12.84□□□□□ -0.35
COL18A1-202ENST00000355480 LYPD5Q6UWN5 251 aa12.84□□□□□ -0.35
COL18A1-202ENST00000355480 JMJD1CQ15652 2540 aa12.83□□□□□ -0.35
COL18A1-202ENST00000355480 CSDC2Q9Y534 153 aaKnown RBP12.83□□□□□ -0.36
COL18A1-202ENST00000355480 Q6ZSN1 163 aa12.83□□□□□ -0.36
COL18A1-202ENST00000355480 TSPEAR-AS2P59090 65 aa12.82□□□□□ -0.36
COL18A1-202ENST00000355480 Q9BRP9 147 aa12.82□□□□□ -0.36
COL18A1-202ENST00000355480 A0A087WYN8 130 aa12.82□□□□□ -0.36
COL18A1-202ENST00000355480 BEAN1Q3B7T3 259 aa12.82□□□□□ -0.36
COL18A1-202ENST00000355480 URB1-AS1Q96HZ7 61 aa12.82□□□□□ -0.36
COL18A1-202ENST00000355480 COX7CP15954 63 aa12.81□□□□□ -0.36
COL18A1-202ENST00000355480 RAI1Q7Z5J4 1906 aaPredicted RBP12.81□□□□□ -0.36
COL18A1-202ENST00000355480 AMELXQ99217 191 aa12.8□□□□□ -0.36
COL18A1-202ENST00000355480 ATG2AQ2TAZ0 1938 aa12.8□□□□□ -0.36
COL18A1-202ENST00000355480 XGP55808 180 aa12.79□□□□□ -0.36
COL18A1-202ENST00000355480 LINC00208Q96KT6 92 aa12.79□□□□□ -0.36
COL18A1-202ENST00000355480 RETNLBQ9BQ08 111 aa12.79□□□□□ -0.36
COL18A1-202ENST00000355480 ADAMTSL4-AS1Q5T5F5 129 aa12.79□□□□□ -0.36
COL18A1-202ENST00000355480 A0A1B0GUV1 79 aa12.78□□□□□ -0.36
COL18A1-202ENST00000355480 F8WDY8 70 aa12.78□□□□□ -0.36
COL18A1-202ENST00000355480 C2orf48Q96LS8 159 aa12.78□□□□□ -0.36
COL18A1-202ENST00000355480 TLN1Q9Y490 2541 aaKnown RBP12.77□□□□□ -0.36
COL18A1-202ENST00000355480 LINC00310P59036 64 aa12.77□□□□□ -0.36
COL18A1-202ENST00000355480 EXPH5Q8NEV8 1989 aa12.76□□□□□ -0.37
COL18A1-202ENST00000355480 LINC01547P58512 204 aaPredicted RBP12.76□□□□□ -0.37
COL18A1-202ENST00000355480 COX8CQ7Z4L0 72 aa12.75□□□□□ -0.37
COL18A1-202ENST00000355480 PRYO14603 147 aa12.75□□□□□ -0.37
COL18A1-202ENST00000355480 CCDC179H3BU77 68 aa12.75□□□□□ -0.37
COL18A1-202ENST00000355480 NHLRC4P0CG21 123 aaPredicted RBP12.75□□□□□ -0.37
COL18A1-202ENST00000355480 X6R8D5 127 aa12.74□□□□□ -0.37
COL18A1-202ENST00000355480 A0A087WSZ3 146 aa12.74□□□□□ -0.37
COL18A1-202ENST00000355480 FHL3Q13643 280 aa12.74□□□□□ -0.37
COL18A1-202ENST00000355480 Q6Q795 121 aa12.73□□□□□ -0.37
COL18A1-202ENST00000355480 Q6ZRU5 148 aa12.73□□□□□ -0.37
COL18A1-202ENST00000355480 LINC00575Q6W349 94 aa12.72□□□□□ -0.37
COL18A1-202ENST00000355480 TRAV7A0A075B6U4 112 aa12.72□□□□□ -0.37
COL18A1-202ENST00000355480 A0A087WVE0 104 aa12.71□□□□□ -0.37
COL18A1-202ENST00000355480 TRBV7-6A0A0J9YX20 115 aa12.71□□□□□ -0.38
COL18A1-202ENST00000355480 PTPRSQ13332 1948 aa12.71□□□□□ -0.38
COL18A1-202ENST00000355480 ZFYVE26Q68DK2 2539 aa12.7□□□□□ -0.38
COL18A1-202ENST00000355480 ABCA12Q86UK0 2595 aa12.7□□□□□ -0.38
COL18A1-202ENST00000355480 PRLHP81277 87 aa12.7□□□□□ -0.38
COL18A1-202ENST00000355480 DEFB116Q30KQ4 102 aa12.7□□□□□ -0.38
COL18A1-202ENST00000355480 PCOTHQ58A44 107 aa12.68□□□□□ -0.38
COL18A1-202ENST00000355480 A8MTW9 85 aa12.68□□□□□ -0.38
COL18A1-202ENST00000355480 LINC01561Q8N1V8 128 aa12.67□□□□□ -0.38
COL18A1-202ENST00000355480 EML5Q05BV3 1969 aa12.67□□□□□ -0.38
COL18A1-202ENST00000355480 COL5A1P20908 1838 aaPredicted RBP12.67□□□□□ -0.38
COL18A1-202ENST00000355480 SPINK1P00995 79 aa12.66□□□□□ -0.38
COL18A1-202ENST00000355480 Q8N3U1 123 aa12.66□□□□□ -0.38
COL18A1-202ENST00000355480 A0A096LNJ9 63 aa12.65□□□□□ -0.38
COL18A1-202ENST00000355480 C22orf24Q9Y442 160 aa12.65□□□□□ -0.38
COL18A1-202ENST00000355480 MDFIQ99750 246 aa12.64□□□□□ -0.39
COL18A1-202ENST00000355480 Q8N2B8 174 aa12.64□□□□□ -0.39
COL18A1-202ENST00000355480 LIMD2Q9BT23 127 aa12.64□□□□□ -0.39
COL18A1-202ENST00000355480 SBSPONQ8IVN8 264 aa12.63□□□□□ -0.39
COL18A1-202ENST00000355480 LRRK2Q5S007 2527 aa12.63□□□□□ -0.39
COL18A1-202ENST00000355480 SMCR5Q8TEV8 140 aa12.62□□□□□ -0.39
COL18A1-202ENST00000355480 C11orf72Q8NBR9 251 aa12.61□□□□□ -0.39
COL18A1-202ENST00000355480 FN1P02751 2386 aaKnown RBP12.61□□□□□ -0.39
COL18A1-202ENST00000355480 TLN2Q9Y4G6 2542 aa12.61□□□□□ -0.39
COL18A1-202ENST00000355480 H0Y9P7 68 aa12.61□□□□□ -0.39
COL18A1-202ENST00000355480 AGRNO00468 2067 aa12.61□□□□□ -0.39
COL18A1-202ENST00000355480 SMIM26A0A096LP01 95 aa12.61□□□□□ -0.39
COL18A1-202ENST00000355480 SOSTDC1Q6X4U4 206 aa12.6□□□□□ -0.39
COL18A1-202ENST00000355480 CPAMD8Q8IZJ3 1885 aa12.59□□□□□ -0.39
COL18A1-202ENST00000355480 TRBV7-7A0A0K0K1E9 115 aa12.58□□□□□ -0.4
COL18A1-202ENST00000355480 HCG22E2RYF7 251 aa12.58□□□□□ -0.4
COL18A1-202ENST00000355480 LINC00337Q8N6G1 96 aa12.58□□□□□ -0.4
COL18A1-202ENST00000355480 USP9XQ93008 2570 aaPredicted RBP12.57□□□□□ -0.4
COL18A1-202ENST00000355480 KIF25-AS1Q9Y6Z4 181 aa12.57□□□□□ -0.4
COL18A1-202ENST00000355480 ADAMTS20P59510 1910 aa12.56□□□□□ -0.4
COL18A1-202ENST00000355480 TET2Q6N021 2002 aaPredicted RBP12.52□□□□□ -0.41
COL18A1-202ENST00000355480 LINC00846Q9NV44 126 aa12.51□□□□□ -0.41
COL18A1-202ENST00000355480 KIAA0087Q14695 138 aa12.51□□□□□ -0.41
COL18A1-202ENST00000355480 WDR87Q6ZQQ6 2873 aa12.51□□□□□ -0.41
COL18A1-202ENST00000355480 IGHV3OR16-9A0A0B4J2B5 98 aa12.5□□□□□ -0.41
COL18A1-202ENST00000355480 SPACA4Q8TDM5 124 aa12.5□□□□□ -0.41
COL18A1-202ENST00000355480 IGKV2D-30A0A075B6S6 120 aa12.5□□□□□ -0.41
COL18A1-202ENST00000355480 IGLV5-39A0A0G2JS06 123 aa12.5□□□□□ -0.41
COL18A1-202ENST00000355480 IGKV2-30P06310 120 aa12.5□□□□□ -0.41
COL18A1-202ENST00000355480 LINC00167Q96N53 147 aa12.49□□□□□ -0.41
COL18A1-202ENST00000355480 EP400Q96L91 3159 aa12.48□□□□□ -0.41
COL18A1-202ENST00000355480 SETD2Q9BYW2 2564 aaPredicted RBP12.48□□□□□ -0.41
COL18A1-202ENST00000355480 MOBPQ13875 183 aa12.48□□□□□ -0.41
COL18A1-202ENST00000355480 KRTAP24-1Q3LI83 254 aa12.47□□□□□ -0.41
COL18A1-202ENST00000355480 TMEM254Q8TBM7 123 aa12.47□□□□□ -0.41
COL18A1-202ENST00000355480 MUC4Q99102 2169 aa12.47□□□□□ -0.41
COL18A1-202ENST00000355480 C6orf48Q9UBA6 75 aa12.47□□□□□ -0.41
COL18A1-202ENST00000355480 C1orf195Q5TG92 126 aa12.46□□□□□ -0.41
COL18A1-202ENST00000355480 CHD8Q9HCK8 2581 aa12.46□□□□□ -0.41
COL18A1-202ENST00000355480 PSPHP1O15172 72 aa12.45□□□□□ -0.42
COL18A1-202ENST00000355480 ANKRD11Q6UB99 2663 aaPredicted RBP12.45□□□□□ -0.42
COL18A1-202ENST00000355480 ZNF462Q96JM2 2506 aa12.45□□□□□ -0.42
COL18A1-202ENST00000355480 FAM19A4Q96LR4 140 aa12.45□□□□□ -0.42
COL18A1-202ENST00000355480 C1orf64Q8NEQ6 169 aa12.45□□□□□ -0.42
COL18A1-202ENST00000355480 CEP295Q9C0D2 2601 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms