RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 C1orf64Q8NEQ6 169 aa9.19□□□□□ -0.94
COL6A3-203ENST00000353578 LINC00959A0A1B0GUT2 108 aa9.19□□□□□ -0.94
COL6A3-203ENST00000353578 TMEM105Q8N8V8 129 aa9.19□□□□□ -0.94
COL6A3-203ENST00000353578 LY6G6EA0A0G2JKS1 128 aa9.18□□□□□ -0.94
COL6A3-203ENST00000353578 U3KQA8 63 aa9.18□□□□□ -0.94
COL6A3-203ENST00000353578 F8W735 103 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-203ENST00000353578 LY6LH3BQJ8 138 aa9.18□□□□□ -0.94
COL6A3-203ENST00000353578 IGHV4-30-2A0A087WSY4 118 aa9.17□□□□□ -0.94
COL6A3-203ENST00000353578 LRCOL1A6NCL2 159 aa9.17□□□□□ -0.94
COL6A3-203ENST00000353578 RNF223E7ERA6 249 aa9.17□□□□□ -0.94
COL6A3-203ENST00000353578 ADAMTSL4-AS1Q5T5F5 129 aa9.17□□□□□ -0.94
COL6A3-203ENST00000353578 BRI3O95415 125 aa9.17□□□□□ -0.94
COL6A3-203ENST00000353578 IGLV5-39A0A0G2JS06 123 aa9.16□□□□□ -0.94
COL6A3-203ENST00000353578 DEFB136Q30KP8 78 aa9.16□□□□□ -0.94
COL6A3-203ENST00000353578 TSPEAR-AS2P59090 65 aa9.16□□□□□ -0.94
COL6A3-203ENST00000353578 KPRPQ5T749 579 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-203ENST00000353578 SMAD5-AS1Q9Y6J3 95 aa9.16□□□□□ -0.94
COL6A3-203ENST00000353578 A6NDX4 124 aa9.15□□□□□ -0.94
COL6A3-203ENST00000353578 TNFRSF13BO14836 293 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-203ENST00000353578 Q6ZTC4 211 aa9.15□□□□□ -0.94
COL6A3-203ENST00000353578 ZNF580Q9UK33 172 aa9.15□□□□□ -0.94
COL6A3-203ENST00000353578 LCA10Q71F78 164 aa9.15□□□□□ -0.95
COL6A3-203ENST00000353578 LINC00482Q8N8I6 264 aa9.14□□□□□ -0.95
COL6A3-203ENST00000353578 ZFP36P26651 326 aaKnown RBP9.14□□□□□ -0.95
COL6A3-203ENST00000353578 C2orf48Q96LS8 159 aa9.14□□□□□ -0.95
COL6A3-203ENST00000353578 C7orf33Q8WU49 177 aa9.14□□□□□ -0.95
COL6A3-203ENST00000353578 XAGE1AQ9HD64 81 aa9.14□□□□□ -0.95
COL6A3-203ENST00000353578 PIP4P1Q86T03 277 aa9.14□□□□□ -0.95
COL6A3-203ENST00000353578 ZNF843Q8N446 348 aa9.14□□□□□ -0.95
COL6A3-203ENST00000353578 SMCPP49901 116 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-203ENST00000353578 C11orf72Q8NBR9 251 aa9.13□□□□□ -0.95
COL6A3-203ENST00000353578 DAZAP2Q15038 168 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-203ENST00000353578 ZNF702PQ9H963 129 aa9.13□□□□□ -0.95
COL6A3-203ENST00000353578 REG3GQ6UW15 175 aa9.13□□□□□ -0.95
COL6A3-203ENST00000353578 IGLV5-45A0A087WSX0 123 aa9.12□□□□□ -0.95
COL6A3-203ENST00000353578 A0A0J9YWU9 116 aa9.12□□□□□ -0.95
COL6A3-203ENST00000353578 DEFB135Q30KP9 77 aa9.12□□□□□ -0.95
COL6A3-203ENST00000353578 IGKV2-28A0A075B6P5 120 aa9.1□□□□□ -0.95
COL6A3-203ENST00000353578 IGKV2D-28P01615 120 aa9.1□□□□□ -0.95
COL6A3-203ENST00000353578 FAM19A4Q96LR4 140 aa9.1□□□□□ -0.95
COL6A3-203ENST00000353578 LINC00337Q8N6G1 96 aa9.1□□□□□ -0.95
COL6A3-203ENST00000353578 IGF2RP11717 2491 aa9.09□□□□□ -0.95
COL6A3-203ENST00000353578 TRAV22A0A0B4J277 110 aa9.09□□□□□ -0.95
COL6A3-203ENST00000353578 CYSRT1A8MQ03 144 aa9.09□□□□□ -0.95
COL6A3-203ENST00000353578 IGHV4-38-2P0DP08 117 aa9.09□□□□□ -0.96
COL6A3-203ENST00000353578 Q96MF0 132 aa9.08□□□□□ -0.96
COL6A3-203ENST00000353578 C11orf21Q9P2W6 132 aa9.08□□□□□ -0.96
COL6A3-203ENST00000353578 Q8N2B8 174 aa9.08□□□□□ -0.96
COL6A3-203ENST00000353578 C11orf45Q8TAV5 145 aa9.07□□□□□ -0.96
COL6A3-203ENST00000353578 Q6ZQT0 140 aa9.07□□□□□ -0.96
COL6A3-203ENST00000353578 C6orf48Q9UBA6 75 aa9.07□□□□□ -0.96
COL6A3-203ENST00000353578 LOC101927531A0A1B0GV80 90 aa9.06□□□□□ -0.96
COL6A3-203ENST00000353578 FHL2Q14192 279 aa9.06□□□□□ -0.96
COL6A3-203ENST00000353578 LOC100131303A0A0U1RQF7 123 aa9.06□□□□□ -0.96
COL6A3-203ENST00000353578 PRR9Q5T870 116 aa9.05□□□□□ -0.96
COL6A3-203ENST00000353578 Q6ZSV7 163 aa9.05□□□□□ -0.96
COL6A3-203ENST00000353578 IGKV2-24A0A0C4DH68 120 aa9.05□□□□□ -0.96
COL6A3-203ENST00000353578 C9orf116Q5BN46 136 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-203ENST00000353578 UQCR11O14957 56 aa9.04□□□□□ -0.96
COL6A3-203ENST00000353578 MOBPQ13875 183 aa9.04□□□□□ -0.96
COL6A3-203ENST00000353578 LINC00336Q6ZUF6 198 aa9.04□□□□□ -0.96
COL6A3-203ENST00000353578 SMIM29Q86T20 159 aa9.03□□□□□ -0.96
COL6A3-203ENST00000353578 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-203ENST00000353578 IGHV4-61A0A0C4DH41 118 aa9.02□□□□□ -0.96
COL6A3-203ENST00000353578 SPANXA2-OT1Q8N9U9 137 aa9.02□□□□□ -0.97
COL6A3-203ENST00000353578 SPATA3Q8NHX4 192 aa9.02□□□□□ -0.97
COL6A3-203ENST00000353578 GAS8-AS1O95177 125 aa9.02□□□□□ -0.97
COL6A3-203ENST00000353578 DNAJC9-AS1A6NH13 148 aa9.02□□□□□ -0.97
COL6A3-203ENST00000353578 PLA2G2CQ5R387 149 aa9.01□□□□□ -0.97
COL6A3-203ENST00000353578 IGLV1-40P01703 118 aa9.01□□□□□ -0.97
COL6A3-203ENST00000353578 DEFB1P60022 68 aa9□□□□□ -0.97
COL6A3-203ENST00000353578 C6orf223Q8N319 242 aa9□□□□□ -0.97
COL6A3-203ENST00000353578 Q9BRP9 147 aa9□□□□□ -0.97
COL6A3-203ENST00000353578 IGHV6-1A0A0B4J1U7 121 aa9□□□□□ -0.97
COL6A3-203ENST00000353578 Q1T7F1 81 aa8.99□□□□□ -0.97
COL6A3-203ENST00000353578 SPINT4Q6UDR6 99 aa8.98□□□□□ -0.97
COL6A3-203ENST00000353578 DEFB113Q30KQ7 82 aa8.98□□□□□ -0.97
COL6A3-203ENST00000353578 Q8NBF4 154 aa8.98□□□□□ -0.97
COL6A3-203ENST00000353578 TRAV10A0A0B4J240 114 aa8.97□□□□□ -0.97
COL6A3-203ENST00000353578 A0A087WSZ3 146 aa8.97□□□□□ -0.97
COL6A3-203ENST00000353578 EPG5Q9HCE0 2579 aa8.97□□□□□ -0.97
COL6A3-203ENST00000353578 H7BZZ5 65 aa8.97□□□□□ -0.97
COL6A3-203ENST00000353578 MAPK1IP1LQ8NDC0 245 aa8.97□□□□□ -0.97
COL6A3-203ENST00000353578 PCOTHQ58A44 107 aa8.96□□□□□ -0.97
COL6A3-203ENST00000353578 CDC42SE1Q9NRR8 79 aa8.96□□□□□ -0.97
COL6A3-203ENST00000353578 TRBV7-4A0A0J9YYF1 115 aa8.96□□□□□ -0.97
COL6A3-203ENST00000353578 IGHV4-30-4P0DP06 118 aa8.96□□□□□ -0.97
COL6A3-203ENST00000353578 IGHV4-31P0DP07 118 aa8.96□□□□□ -0.97
COL6A3-203ENST00000353578 COX6A2Q02221 97 aa8.96□□□□□ -0.97
COL6A3-203ENST00000353578 DEFB131BA0A096LNP1 70 aa8.96□□□□□ -0.98
COL6A3-203ENST00000353578 CEP295Q9C0D2 2601 aa8.96□□□□□ -0.98
COL6A3-203ENST00000353578 SPINK6Q6UWN8 80 aa8.96□□□□□ -0.98
COL6A3-203ENST00000353578 Q6YL49 198 aa8.96□□□□□ -0.98
COL6A3-203ENST00000353578 C1orf229Q6ZS94 237 aaPredicted RBP8.96□□□□□ -0.98
COL6A3-203ENST00000353578 TM2D3Q9BRN9 247 aa8.96□□□□□ -0.98
COL6A3-203ENST00000353578 USP24Q9UPU5 2620 aa8.95□□□□□ -0.98
COL6A3-203ENST00000353578 UNQ6190/PRO20217Q6UXQ8 127 aa8.94□□□□□ -0.98
COL6A3-203ENST00000353578 PRRC2CQ9Y520 2896 aaKnown RBP8.94□□□□□ -0.98
COL6A3-203ENST00000353578 CR1P17927 2039 aa8.94□□□□□ -0.98
COL6A3-203ENST00000353578 FASNP49327 2511 aaKnown RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms