RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 CCL18P55774 89 aa10.64□□□□□ -0.71
UPF3B-202ENST00000345865 SND1-IT1Q9HBX3 110 aa10.64□□□□□ -0.71
UPF3B-202ENST00000345865 FAM218AQ96MZ4 157 aa10.63□□□□□ -0.71
UPF3B-202ENST00000345865 IBA57-AS1B1ANH7 110 aa10.63□□□□□ -0.71
UPF3B-202ENST00000345865 SS18Q15532 418 aa10.63□□□□□ -0.71
UPF3B-202ENST00000345865 DAD1P61803 113 aa10.62□□□□□ -0.71
UPF3B-202ENST00000345865 LINC00269Q8N2A0 174 aa10.62□□□□□ -0.71
UPF3B-202ENST00000345865 TRAV26-1A0A087WT03 109 aa10.62□□□□□ -0.71
UPF3B-202ENST00000345865 C6orf226Q5I0X4 101 aa10.62□□□□□ -0.71
UPF3B-202ENST00000345865 WFDC9Q8NEX5 89 aa10.61□□□□□ -0.71
UPF3B-202ENST00000345865 TRAV13-2A0A0B4J235 113 aa10.61□□□□□ -0.71
UPF3B-202ENST00000345865 CRPP02741 224 aa10.6□□□□□ -0.71
UPF3B-202ENST00000345865 IGHV4-30-4P0DP06 118 aa10.6□□□□□ -0.71
UPF3B-202ENST00000345865 CMYA5Q8N3K9 4069 aa10.6□□□□□ -0.71
UPF3B-202ENST00000345865 TRAV8-4A0A0B4J246 113 aa10.59□□□□□ -0.71
UPF3B-202ENST00000345865 RPL28P46779 137 aaKnown RBP10.59□□□□□ -0.71
UPF3B-202ENST00000345865 IGLV10-54A0A075B6I4 117 aa10.59□□□□□ -0.71
UPF3B-202ENST00000345865 MIFP14174 115 aa10.59□□□□□ -0.71
UPF3B-202ENST00000345865 Q8IZM0 81 aa10.59□□□□□ -0.71
UPF3B-202ENST00000345865 ATP5G1P05496 136 aa10.58□□□□□ -0.72
UPF3B-202ENST00000345865 DEFB121Q5J5C9 76 aa10.58□□□□□ -0.72
UPF3B-202ENST00000345865 C22orf24Q9Y442 160 aa10.58□□□□□ -0.72
UPF3B-202ENST00000345865 ANGP03950 147 aaKnown RBP10.57□□□□□ -0.72
UPF3B-202ENST00000345865 HTN3P15516 51 aa10.57□□□□□ -0.72
UPF3B-202ENST00000345865 KIAA0087Q14695 138 aa10.57□□□□□ -0.72
UPF3B-202ENST00000345865 SMIM11BQ8TCY0 68 aa10.57□□□□□ -0.72
UPF3B-202ENST00000345865 WIPF1O43516 503 aa10.57□□□□□ -0.72
UPF3B-202ENST00000345865 CHCHD10Q8WYQ3 142 aaPredicted RBP10.57□□□□□ -0.72
UPF3B-202ENST00000345865 TRACP01848 142 aa10.56□□□□□ -0.72
UPF3B-202ENST00000345865 REG3AQ06141 175 aa10.56□□□□□ -0.72
UPF3B-202ENST00000345865 CD164L2Q6UWJ8 174 aa10.56□□□□□ -0.72
UPF3B-202ENST00000345865 SPART-AS1P0CW21 52 aa10.55□□□□□ -0.72
UPF3B-202ENST00000345865 LINC01561Q8N1V8 128 aa10.55□□□□□ -0.72
UPF3B-202ENST00000345865 Q9HAA7 133 aa10.55□□□□□ -0.72
UPF3B-202ENST00000345865 F8P00451 2351 aa10.54□□□□□ -0.72
UPF3B-202ENST00000345865 PKD1L1Q8TDX9 2849 aa10.54□□□□□ -0.72
UPF3B-202ENST00000345865 BAALC-AS2P0C853 105 aa10.53□□□□□ -0.72
UPF3B-202ENST00000345865 A0A087WYN8 130 aa10.53□□□□□ -0.72
UPF3B-202ENST00000345865 MRPL23Q16540 153 aaKnown RBP10.52□□□□□ -0.72
UPF3B-202ENST00000345865 OXLD1Q5BKU9 147 aa10.52□□□□□ -0.72
UPF3B-202ENST00000345865 CKS1BP61024 79 aa10.52□□□□□ -0.73
UPF3B-202ENST00000345865 C9orf116Q5BN46 136 aaPredicted RBP10.52□□□□□ -0.73
UPF3B-202ENST00000345865 FBN1P35555 2871 aaKnown RBP10.51□□□□□ -0.73
UPF3B-202ENST00000345865 PRR3P79522 188 aaKnown RBP10.51□□□□□ -0.73
UPF3B-202ENST00000345865 LELP1Q5T871 98 aa10.5□□□□□ -0.73
UPF3B-202ENST00000345865 OR13C6PQ8NH95 151 aa10.5□□□□□ -0.73
UPF3B-202ENST00000345865 KRTAP10-11P60412 298 aa10.5□□□□□ -0.73
UPF3B-202ENST00000345865 C15orf53Q8NAA6 179 aa10.5□□□□□ -0.73
UPF3B-202ENST00000345865 MALP21145 153 aa10.49□□□□□ -0.73
UPF3B-202ENST00000345865 RETNQ9HD89 108 aa10.49□□□□□ -0.73
UPF3B-202ENST00000345865 FAM240AA0A1B0GVK7 77 aa10.49□□□□□ -0.73
UPF3B-202ENST00000345865 SNCGO76070 127 aa10.48□□□□□ -0.73
UPF3B-202ENST00000345865 CFAP161Q6P656 301 aa10.48□□□□□ -0.73
UPF3B-202ENST00000345865 TTC32Q5I0X7 151 aa10.47□□□□□ -0.73
UPF3B-202ENST00000345865 C6orf223Q8N319 242 aa10.47□□□□□ -0.73
UPF3B-202ENST00000345865 Q8NDZ9 215 aa10.47□□□□□ -0.73
UPF3B-202ENST00000345865 LINC00526Q96FQ7 95 aa10.47□□□□□ -0.73
UPF3B-202ENST00000345865 KLK12Q9UKR0 248 aa10.47□□□□□ -0.73
UPF3B-202ENST00000345865 A0A1B0GV72 72 aa10.47□□□□□ -0.73
UPF3B-202ENST00000345865 NANOS2P60321 138 aaKnown RBP10.47□□□□□ -0.73
UPF3B-202ENST00000345865 C10orf25Q5T742 122 aa10.47□□□□□ -0.73
UPF3B-202ENST00000345865 STAB1Q9NY15 2570 aa10.46□□□□□ -0.73
UPF3B-202ENST00000345865 C9orf129Q5T035 196 aaKnown RBP10.46□□□□□ -0.73
UPF3B-202ENST00000345865 PRR34Q9NV39 138 aa10.46□□□□□ -0.73
UPF3B-202ENST00000345865 TENM3Q9P273 2699 aa10.46□□□□□ -0.73
UPF3B-202ENST00000345865 CXCL5P42830 114 aa10.46□□□□□ -0.74
UPF3B-202ENST00000345865 LYPD5Q6UWN5 251 aa10.46□□□□□ -0.74
UPF3B-202ENST00000345865 ENHOQ6UWT2 76 aa10.46□□□□□ -0.74
UPF3B-202ENST00000345865 FLNBO75369 2602 aaKnown RBP10.46□□□□□ -0.74
UPF3B-202ENST00000345865 H0YGX0 51 aa10.45□□□□□ -0.74
UPF3B-202ENST00000345865 COX17Q14061 63 aa10.45□□□□□ -0.74
UPF3B-202ENST00000345865 DNAH3Q8TD57 4116 aa10.45□□□□□ -0.74
UPF3B-202ENST00000345865 LECT2O14960 151 aa10.45□□□□□ -0.74
UPF3B-202ENST00000345865 UNQ6190/PRO20217Q6UXQ8 127 aa10.45□□□□□ -0.74
UPF3B-202ENST00000345865 GAGE2BQ13066 116 aa10.44□□□□□ -0.74
UPF3B-202ENST00000345865 GAGE2EQ4V326 116 aa10.44□□□□□ -0.74
UPF3B-202ENST00000345865 GAGE2DQ9UEU5 116 aa10.44□□□□□ -0.74
UPF3B-202ENST00000345865 KLK5Q9Y337 293 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-202ENST00000345865 DNAL4O96015 105 aa10.42□□□□□ -0.74
UPF3B-202ENST00000345865 SLPIP03973 132 aa10.42□□□□□ -0.74
UPF3B-202ENST00000345865 NDUFC2O95298 119 aa10.42□□□□□ -0.74
UPF3B-202ENST00000345865 SPAG11BQ08648 103 aa10.42□□□□□ -0.74
UPF3B-202ENST00000345865 KRTAP24-1Q3LI83 254 aa10.42□□□□□ -0.74
UPF3B-202ENST00000345865 SMCR5Q8TEV8 140 aa10.42□□□□□ -0.74
UPF3B-202ENST00000345865 CYSRT1A8MQ03 144 aa10.41□□□□□ -0.74
UPF3B-202ENST00000345865 Q6ZTC4 211 aa10.4□□□□□ -0.74
UPF3B-202ENST00000345865 WFDC10BQ8IUB3 73 aa10.4□□□□□ -0.74
UPF3B-202ENST00000345865 KPRPQ5T749 579 aaPredicted RBP10.4□□□□□ -0.74
UPF3B-202ENST00000345865 Q6Q795 121 aa10.4□□□□□ -0.74
UPF3B-202ENST00000345865 NHLRC4P0CG21 123 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-202ENST00000345865 NCR3O14931 201 aa10.39□□□□□ -0.75
UPF3B-202ENST00000345865 ACYP1P07311 99 aa10.39□□□□□ -0.75
UPF3B-202ENST00000345865 A0A0J9YWU9 116 aa10.38□□□□□ -0.75
UPF3B-202ENST00000345865 EGFEM1PQ0D2K5 195 aa10.38□□□□□ -0.75
UPF3B-202ENST00000345865 TMEM126AQ9H061 195 aa10.38□□□□□ -0.75
UPF3B-202ENST00000345865 INAFM2P0DMQ5 153 aa10.37□□□□□ -0.75
UPF3B-202ENST00000345865 SDIM1Q6ZPB5 146 aa10.37□□□□□ -0.75
UPF3B-202ENST00000345865 ANAPC13Q9BS18 74 aa10.37□□□□□ -0.75
UPF3B-202ENST00000345865 NDUFV3P56181 108 aaKnown RBP10.36□□□□□ -0.75
UPF3B-202ENST00000345865 OBSCN-AS1Q96MR7 158 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms