RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CSDC2Q9Y534 153 aaKnown RBP9.02□□□□□ -0.97
CLK3-201ENST00000345005 C3orf22Q8N5N4 141 aa9.01□□□□□ -0.97
CLK3-201ENST00000345005 IGLV5-39A0A0G2JS06 123 aa9.01□□□□□ -0.97
CLK3-201ENST00000345005 J3KT08 172 aa9.01□□□□□ -0.97
CLK3-201ENST00000345005 COX7A2LO14548 114 aa9.01□□□□□ -0.97
CLK3-201ENST00000345005 CXCL5P42830 114 aa9.01□□□□□ -0.97
CLK3-201ENST00000345005 LINC00526Q96FQ7 95 aa9.01□□□□□ -0.97
CLK3-201ENST00000345005 TRACP01848 142 aa9□□□□□ -0.97
CLK3-201ENST00000345005 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.99□□□□□ -0.97
CLK3-201ENST00000345005 IGKV2-29A2NJV5 120 aaPredicted RBP8.99□□□□□ -0.97
CLK3-201ENST00000345005 DEFB4AO15263 64 aa8.99□□□□□ -0.97
CLK3-201ENST00000345005 DAD1P61803 113 aa8.99□□□□□ -0.97
CLK3-201ENST00000345005 LINC00308Q8TCZ7 52 aa8.99□□□□□ -0.97
CLK3-201ENST00000345005 PRO0255Q9UI72 69 aa8.99□□□□□ -0.97
CLK3-201ENST00000345005 LOC100131303A0A0U1RQF7 123 aa8.98□□□□□ -0.97
CLK3-201ENST00000345005 SPART-AS1P0CW21 52 aa8.98□□□□□ -0.97
CLK3-201ENST00000345005 OR13C6PQ8NH95 151 aa8.98□□□□□ -0.97
CLK3-201ENST00000345005 CEMP1Q6PRD7 247 aaPredicted RBP8.98□□□□□ -0.97
CLK3-201ENST00000345005 NTM-AS1Q6ZSK4 140 aa8.98□□□□□ -0.97
CLK3-201ENST00000345005 LINC00643Q86TS7 51 aa8.98□□□□□ -0.97
CLK3-201ENST00000345005 CLEC2BQ92478 149 aa8.98□□□□□ -0.97
CLK3-201ENST00000345005 CDKN2A-AS1Q9UH64 79 aa8.98□□□□□ -0.97
CLK3-201ENST00000345005 NBEAL1Q6ZS30 2694 aa8.97□□□□□ -0.97
CLK3-201ENST00000345005 LINC00694P0DN24 101 aa8.97□□□□□ -0.97
CLK3-201ENST00000345005 CMYA5Q8N3K9 4069 aa8.97□□□□□ -0.97
CLK3-201ENST00000345005 INAFM2P0DMQ5 153 aa8.96□□□□□ -0.97
CLK3-201ENST00000345005 TMEM243Q9BU79 118 aa8.96□□□□□ -0.97
CLK3-201ENST00000345005 GYPEP15421 78 aa8.96□□□□□ -0.98
CLK3-201ENST00000345005 SDIM1Q6ZPB5 146 aa8.96□□□□□ -0.98
CLK3-201ENST00000345005 Q9H8V8 135 aa8.96□□□□□ -0.98
CLK3-201ENST00000345005 TRAV13-2A0A0B4J235 113 aa8.95□□□□□ -0.98
CLK3-201ENST00000345005 UBE2L6O14933 153 aa8.95□□□□□ -0.98
CLK3-201ENST00000345005 PAX4O43316 350 aa8.95□□□□□ -0.98
CLK3-201ENST00000345005 RNASE13Q5GAN3 156 aaKnown RBP8.95□□□□□ -0.98
CLK3-201ENST00000345005 C9orf153Q5TBE3 101 aa8.95□□□□□ -0.98
CLK3-201ENST00000345005 CELA1Q9UNI1 258 aa8.95□□□□□ -0.98
CLK3-201ENST00000345005 DAND5Q8N907 189 aa8.94□□□□□ -0.98
CLK3-201ENST00000345005 TRBV6-8A0A0A6YYG3 113 aa8.94□□□□□ -0.98
CLK3-201ENST00000345005 CRYGAP11844 174 aa8.94□□□□□ -0.98
CLK3-201ENST00000345005 LINC00242Q5T6M2 205 aa8.94□□□□□ -0.98
CLK3-201ENST00000345005 NPC2P61916 151 aa8.93□□□□□ -0.98
CLK3-201ENST00000345005 CHCHD5Q9BSY4 110 aa8.93□□□□□ -0.98
CLK3-201ENST00000345005 COX7CP15954 63 aa8.92□□□□□ -0.98
CLK3-201ENST00000345005 SMIM1B2RUZ4 78 aa8.91□□□□□ -0.98
CLK3-201ENST00000345005 BAALC-AS2P0C853 105 aa8.91□□□□□ -0.98
CLK3-201ENST00000345005 C5orf38Q86SI9 138 aa8.91□□□□□ -0.98
CLK3-201ENST00000345005 ZNF625Q96I27 306 aaPredicted RBP8.91□□□□□ -0.98
CLK3-201ENST00000345005 RETNQ9HD89 108 aa8.91□□□□□ -0.98
CLK3-201ENST00000345005 F5H768 121 aa8.91□□□□□ -0.98
CLK3-201ENST00000345005 C11orf68Q9H3H3 251 aaKnown RBP8.91□□□□□ -0.98
CLK3-201ENST00000345005 NOTCH1P46531 2555 aa8.9□□□□□ -0.98
CLK3-201ENST00000345005 COX6A2Q02221 97 aa8.9□□□□□ -0.98
CLK3-201ENST00000345005 CDC42SE2Q9NRR3 84 aa8.9□□□□□ -0.98
CLK3-201ENST00000345005 ATOX1O00244 68 aa8.89□□□□□ -0.99
CLK3-201ENST00000345005 RPL28P46779 137 aaKnown RBP8.89□□□□□ -0.99
CLK3-201ENST00000345005 FAM236AA0A1B0GUQ0 79 aa8.89□□□□□ -0.99
CLK3-201ENST00000345005 FAM236BA0A1B0GV22 79 aa8.89□□□□□ -0.99
CLK3-201ENST00000345005 H0YGX0 51 aa8.89□□□□□ -0.99
CLK3-201ENST00000345005 HTN3P15516 51 aa8.89□□□□□ -0.99
CLK3-201ENST00000345005 KPRPQ5T749 579 aaPredicted RBP8.89□□□□□ -0.99
CLK3-201ENST00000345005 DNAH3Q8TD57 4116 aa8.89□□□□□ -0.99
CLK3-201ENST00000345005 CRPP02741 224 aa8.87□□□□□ -0.99
CLK3-201ENST00000345005 TMEM258P61165 79 aa8.87□□□□□ -0.99
CLK3-201ENST00000345005 FAM19A5Q7Z5A7 132 aaPredicted RBP8.87□□□□□ -0.99
CLK3-201ENST00000345005 HIST1H4AP62805 103 aaKnown RBP8.87□□□□□ -0.99
CLK3-201ENST00000345005 GAGE2AQ6NT46 116 aa8.87□□□□□ -0.99
CLK3-201ENST00000345005 MEGF8Q7Z7M0 2845 aa8.86□□□□□ -0.99
CLK3-201ENST00000345005 MGAM2Q2M2H8 2515 aa8.86□□□□□ -0.99
CLK3-201ENST00000345005 K7EIL1 84 aa8.86□□□□□ -0.99
CLK3-201ENST00000345005 PRB2P02812 416 aaPredicted RBP8.86□□□□□ -0.99
CLK3-201ENST00000345005 MALP21145 153 aa8.86□□□□□ -0.99
CLK3-201ENST00000345005 A0A096LPF7 62 aa8.85□□□□□ -0.99
CLK3-201ENST00000345005 TRAV13-1A0A0B4J241 112 aa8.85□□□□□ -0.99
CLK3-201ENST00000345005 DNAL4O96015 105 aa8.85□□□□□ -0.99
CLK3-201ENST00000345005 A0A1B0GUV1 79 aa8.84□□□□□ -0.99
CLK3-201ENST00000345005 SOSTDC1Q6X4U4 206 aa8.84□□□□□ -0.99
CLK3-201ENST00000345005 MRAPQ8TCY5 172 aa8.84□□□□□ -0.99
CLK3-201ENST00000345005 A0A0J9YWU9 116 aa8.84□□□□□ -0.99
CLK3-201ENST00000345005 H3BNG1 76 aa8.84□□□□□ -0.99
CLK3-201ENST00000345005 COX7B2Q8TF08 81 aa8.84□□□□□ -0.99
CLK3-201ENST00000345005 TM2D3Q9BRN9 247 aa8.84□□□□□ -0.99
CLK3-201ENST00000345005 IGLV4-60A0A075B6I1 120 aa8.83□□□□□ -1
CLK3-201ENST00000345005 C2orf48Q96LS8 159 aa8.83□□□□□ -1
CLK3-201ENST00000345005 IBA57-AS1B1ANH7 110 aa8.82□□□□□ -1
CLK3-201ENST00000345005 C11orf45Q8TAV5 145 aa8.82□□□□□ -1
CLK3-201ENST00000345005 Q6ZTC4 211 aa8.82□□□□□ -1
CLK3-201ENST00000345005 SND1-IT1Q9HBX3 110 aa8.82□□□□□ -1
CLK3-201ENST00000345005 TENM3Q9P273 2699 aa8.81□□□□□ -1
CLK3-201ENST00000345005 A0A0U1RRA0 63 aa8.81□□□□□ -1
CLK3-201ENST00000345005 NDUFC2-KCTD14E9PQ53 114 aa8.81□□□□□ -1
CLK3-201ENST00000345005 LELP1Q5T871 98 aa8.8□□□□□ -1
CLK3-201ENST00000345005 NANOS2P60321 138 aaKnown RBP8.79□□□□□ -1
CLK3-201ENST00000345005 MIR7-3HGQ8N6C7 128 aa8.79□□□□□ -1
CLK3-201ENST00000345005 OBSCN-AS1Q96MR7 158 aa8.79□□□□□ -1
CLK3-201ENST00000345005 IGKV3OR2-268A0A0C4DH90 116 aa8.78□□□□□ -1
CLK3-201ENST00000345005 SMCR5Q8TEV8 140 aa8.78□□□□□ -1
CLK3-201ENST00000345005 DEFB131BA0A096LNP1 70 aa8.77□□□□□ -1
CLK3-201ENST00000345005 LINC00959A0A1B0GUT2 108 aa8.77□□□□□ -1
CLK3-201ENST00000345005 LINC00158P58513 81 aa8.77□□□□□ -1
CLK3-201ENST00000345005 SS18Q15532 418 aa8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms