RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 ERASQ7Z444 233 aa8.91□□□□□ -0.98
HMGN3-202ENST00000344726 SCGB3A1Q96QR1 104 aa8.91□□□□□ -0.98
HMGN3-202ENST00000344726 CDKN2A-AS1Q9UH64 79 aa8.91□□□□□ -0.98
HMGN3-202ENST00000344726 TRBV30A0A0K0K1B3 111 aa8.9□□□□□ -0.98
HMGN3-202ENST00000344726 SRSF9Q13242 221 aaKnown RBP eCLIP8.9□□□□□ -0.98
HMGN3-202ENST00000344726 GAGE2EQ4V326 116 aa8.9□□□□□ -0.98
HMGN3-202ENST00000344726 KRTAP7-1Q8IUC3 87 aa8.9□□□□□ -0.98
HMGN3-202ENST00000344726 GAGE2DQ9UEU5 116 aa8.9□□□□□ -0.98
HMGN3-202ENST00000344726 PLA2G2DQ9UNK4 145 aa8.9□□□□□ -0.98
HMGN3-202ENST00000344726 APOC3P02656 99 aa8.89□□□□□ -0.99
HMGN3-202ENST00000344726 HERVK_113P63121 156 aa8.89□□□□□ -0.99
HMGN3-202ENST00000344726 PAPPA-AS1Q5QFB9 102 aa8.89□□□□□ -0.99
HMGN3-202ENST00000344726 TOMM7Q9P0U1 55 aa8.89□□□□□ -0.99
HMGN3-202ENST00000344726 PSORS1C2Q9UIG4 136 aa8.89□□□□□ -0.99
HMGN3-202ENST00000344726 KRTAP11-1Q8IUC1 163 aa8.88□□□□□ -0.99
HMGN3-202ENST00000344726 Q8IZM0 81 aa8.88□□□□□ -0.99
HMGN3-202ENST00000344726 URB1-AS1Q96HZ7 61 aa8.88□□□□□ -0.99
HMGN3-202ENST00000344726 LINC01600Q96MT4 127 aa8.88□□□□□ -0.99
HMGN3-202ENST00000344726 SEC11AP67812 179 aa8.87□□□□□ -0.99
HMGN3-202ENST00000344726 C9orf129Q5T035 196 aaKnown RBP8.87□□□□□ -0.99
HMGN3-202ENST00000344726 SPINK6Q6UWN8 80 aa8.87□□□□□ -0.99
HMGN3-202ENST00000344726 FA2HQ7L5A8 372 aa8.87□□□□□ -0.99
HMGN3-202ENST00000344726 PACRGQ96M98 296 aaPredicted RBP8.87□□□□□ -0.99
HMGN3-202ENST00000344726 GEMIN7Q9H840 131 aaKnown RBP8.87□□□□□ -0.99
HMGN3-202ENST00000344726 A0A096LNJ9 63 aa8.86□□□□□ -0.99
HMGN3-202ENST00000344726 NDUFC2-KCTD14E9PQ53 114 aa8.86□□□□□ -0.99
HMGN3-202ENST00000344726 PRSS2P07478 247 aa8.86□□□□□ -0.99
HMGN3-202ENST00000344726 C6orf226Q5I0X4 101 aa8.86□□□□□ -0.99
HMGN3-202ENST00000344726 FAM19A5Q7Z5A7 132 aaPredicted RBP8.86□□□□□ -0.99
HMGN3-202ENST00000344726 C18orf32Q8TCD1 76 aa8.86□□□□□ -0.99
HMGN3-202ENST00000344726 CST9LQ9H4G1 147 aa8.86□□□□□ -0.99
HMGN3-202ENST00000344726 TRAPPC1Q9Y5R8 145 aa8.86□□□□□ -0.99
HMGN3-202ENST00000344726 IGLV5-45A0A087WSX0 123 aa8.85□□□□□ -0.99
HMGN3-202ENST00000344726 TINCRA0A1B0GVN0 87 aa8.85□□□□□ -0.99
HMGN3-202ENST00000344726 SMIM1B2RUZ4 78 aa8.85□□□□□ -0.99
HMGN3-202ENST00000344726 CKS1BP61024 79 aa8.85□□□□□ -0.99
HMGN3-202ENST00000344726 LINC00469Q8N7U9 141 aa8.85□□□□□ -0.99
HMGN3-202ENST00000344726 SMCO4Q9NRQ5 59 aa8.85□□□□□ -0.99
HMGN3-202ENST00000344726 LINC01549A6NIU2 74 aa8.84□□□□□ -0.99
HMGN3-202ENST00000344726 SNAPINO95295 136 aa8.84□□□□□ -0.99
HMGN3-202ENST00000344726 C1orf137Q5JT78 98 aa8.84□□□□□ -0.99
HMGN3-202ENST00000344726 SVBPQ8N300 66 aa8.84□□□□□ -0.99
HMGN3-202ENST00000344726 LRP2P98164 4655 aa8.84□□□□□ -0.99
HMGN3-202ENST00000344726 PMVKQ15126 192 aa8.83□□□□□ -1
HMGN3-202ENST00000344726 YPEL4Q96NS1 127 aa8.83□□□□□ -1
HMGN3-202ENST00000344726 M0QXV9 152 aa8.82□□□□□ -1
HMGN3-202ENST00000344726 KRTAP10-8P60410 259 aa8.82□□□□□ -1
HMGN3-202ENST00000344726 NDUFA5Q16718 116 aa8.82□□□□□ -1
HMGN3-202ENST00000344726 F8VRH5 84 aa8.81□□□□□ -1
HMGN3-202ENST00000344726 SPINK8P0C7L1 97 aa8.81□□□□□ -1
HMGN3-202ENST00000344726 LINC00614P0C842 121 aa8.81□□□□□ -1
HMGN3-202ENST00000344726 PMCHL1Q16048 86 aa8.81□□□□□ -1
HMGN3-202ENST00000344726 PDZD11Q5EBL8 140 aa8.81□□□□□ -1
HMGN3-202ENST00000344726 REG3GQ6UW15 175 aa8.81□□□□□ -1
HMGN3-202ENST00000344726 COX7B2Q8TF08 81 aa8.8□□□□□ -1
HMGN3-202ENST00000344726 XAGE1AQ9HD64 81 aa8.8□□□□□ -1
HMGN3-202ENST00000344726 HBDP02042 147 aa8.79□□□□□ -1
HMGN3-202ENST00000344726 IGLV7-43P04211 117 aa8.79□□□□□ -1
HMGN3-202ENST00000344726 CXCL5P42830 114 aa8.79□□□□□ -1
HMGN3-202ENST00000344726 IGLC3P0DOY3 106 aa8.78□□□□□ -1
HMGN3-202ENST00000344726 RNF213Q63HN8 5207 aa8.78□□□□□ -1
HMGN3-202ENST00000344726 NDUFA6P56556 154 aa8.77□□□□□ -1.01
HMGN3-202ENST00000344726 ZNF22P17026 224 aaPredicted RBP8.76□□□□□ -1.01
HMGN3-202ENST00000344726 UBE2BP63146 152 aa8.76□□□□□ -1.01
HMGN3-202ENST00000344726 CBLN2Q8IUK8 224 aa8.76□□□□□ -1.01
HMGN3-202ENST00000344726 C22orf24Q9Y442 160 aa8.76□□□□□ -1.01
HMGN3-202ENST00000344726 IGLV5-39A0A0G2JS06 123 aa8.75□□□□□ -1.01
HMGN3-202ENST00000344726 H3BRM9 83 aa8.74□□□□□ -1.01
HMGN3-202ENST00000344726 RAB5BP61020 215 aa8.74□□□□□ -1.01
HMGN3-202ENST00000344726 C11orf86A6NJI1 115 aa8.73□□□□□ -1.01
HMGN3-202ENST00000344726 H0Y9J4 135 aa8.72□□□□□ -1.01
HMGN3-202ENST00000344726 ATP5LO75964 103 aa8.72□□□□□ -1.01
HMGN3-202ENST00000344726 BAGE3Q86Y29 109 aa8.72□□□□□ -1.01
HMGN3-202ENST00000344726 DIRC1Q969H9 104 aa8.72□□□□□ -1.01
HMGN3-202ENST00000344726 SLC7A5P1Q8MH63 180 aa8.71□□□□□ -1.02
HMGN3-202ENST00000344726 TP73-AS1Q9UF72 201 aa8.71□□□□□ -1.02
HMGN3-202ENST00000344726 MRPL55Q7Z7F7 128 aaKnown RBP8.7□□□□□ -1.02
HMGN3-202ENST00000344726 CHCHD1Q96BP2 118 aaKnown RBP8.7□□□□□ -1.02
HMGN3-202ENST00000344726 KRTAP1-4P0C5Y4 121 aa8.69□□□□□ -1.02
HMGN3-202ENST00000344726 LBHQ53QV2 105 aaPredicted RBP8.69□□□□□ -1.02
HMGN3-202ENST00000344726 PRR26Q8N8Z3 221 aa8.69□□□□□ -1.02
HMGN3-202ENST00000344726 LPAP08519 4548 aa8.69□□□□□ -1.02
HMGN3-202ENST00000344726 TRGC2P03986 189 aa8.68□□□□□ -1.02
HMGN3-202ENST00000344726 PFN2P35080 140 aa8.68□□□□□ -1.02
HMGN3-202ENST00000344726 TMEM170BQ5T4T1 132 aa8.68□□□□□ -1.02
HMGN3-202ENST00000344726 LINC00167Q96N53 147 aa8.68□□□□□ -1.02
HMGN3-202ENST00000344726 CHTOPQ9Y3Y2 248 aaKnown RBP8.68□□□□□ -1.02
HMGN3-202ENST00000344726 IGLV5-37A0A075B6J1 123 aa8.67□□□□□ -1.02
HMGN3-202ENST00000344726 NUPR1O60356 82 aa8.67□□□□□ -1.02
HMGN3-202ENST00000344726 FAM19A2Q8N3H0 131 aa8.67□□□□□ -1.02
HMGN3-202ENST00000344726 IFI27L1Q96BM0 104 aa8.67□□□□□ -1.02
HMGN3-202ENST00000344726 TRAV12-1A0A0B4J245 112 aa8.66□□□□□ -1.02
HMGN3-202ENST00000344726 GAGE10A6NGK3 116 aa8.66□□□□□ -1.02
HMGN3-202ENST00000344726 RPL37AP8A6NKH3 93 aa8.66□□□□□ -1.02
HMGN3-202ENST00000344726 ZNF861PO60384 105 aa8.66□□□□□ -1.02
HMGN3-202ENST00000344726 SCO1O75880 301 aa8.66□□□□□ -1.02
HMGN3-202ENST00000344726 LINC00310P59036 64 aa8.66□□□□□ -1.02
HMGN3-202ENST00000344726 ZNF625Q96I27 306 aaPredicted RBP8.66□□□□□ -1.02
HMGN3-202ENST00000344726 ERG28Q9UKR5 140 aa8.66□□□□□ -1.02
HMGN3-202ENST00000344726 H3BS24 57 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms