RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CRIPTQ9P021 101 aa12.91□□□□□ -0.34
SMAD4-201ENST00000342988 PRM2P04554 102 aa12.91□□□□□ -0.34
SMAD4-201ENST00000342988 PLA2G2CQ5R387 149 aa12.91□□□□□ -0.34
SMAD4-201ENST00000342988 PIP4P1Q86T03 277 aa12.9□□□□□ -0.34
SMAD4-201ENST00000342988 SSBP3-AS1Q7Z2R9 100 aa12.9□□□□□ -0.35
SMAD4-201ENST00000342988 C2orf91Q6ZV80 131 aa12.89□□□□□ -0.35
SMAD4-201ENST00000342988 IGLV2-14P01704 120 aa12.89□□□□□ -0.35
SMAD4-201ENST00000342988 PIEZO2Q9H5I5 2752 aa12.89□□□□□ -0.35
SMAD4-201ENST00000342988 SETD2Q9BYW2 2564 aaPredicted RBP12.89□□□□□ -0.35
SMAD4-201ENST00000342988 GDF5OSQ5U4N7 250 aa12.88□□□□□ -0.35
SMAD4-201ENST00000342988 LINC00482Q8N8I6 264 aa12.88□□□□□ -0.35
SMAD4-201ENST00000342988 IGFL2Q6UWQ7 119 aa12.88□□□□□ -0.35
SMAD4-201ENST00000342988 LTBP2Q14767 1821 aa12.88□□□□□ -0.35
SMAD4-201ENST00000342988 CDC42SE2Q9NRR3 84 aa12.87□□□□□ -0.35
SMAD4-201ENST00000342988 POLQO75417 2590 aa12.86□□□□□ -0.35
SMAD4-201ENST00000342988 A0A087WSZ3 146 aa12.85□□□□□ -0.35
SMAD4-201ENST00000342988 H3BPC8 53 aa12.85□□□□□ -0.35
SMAD4-201ENST00000342988 ADORA2A-AS1P86434 159 aa12.84□□□□□ -0.35
SMAD4-201ENST00000342988 COL4A6Q14031 1691 aa12.84□□□□□ -0.35
SMAD4-201ENST00000342988 A0A1B0GW54 56 aa12.83□□□□□ -0.35
SMAD4-201ENST00000342988 TRAV22A0A0B4J277 110 aa12.83□□□□□ -0.36
SMAD4-201ENST00000342988 FBXL19-AS1Q494R0 122 aa12.83□□□□□ -0.36
SMAD4-201ENST00000342988 Q8N2B8 174 aa12.83□□□□□ -0.36
SMAD4-201ENST00000342988 U3KQA8 63 aa12.83□□□□□ -0.36
SMAD4-201ENST00000342988 SPTBN4Q9H254 2564 aa12.83□□□□□ -0.36
SMAD4-201ENST00000342988 A0A087WYN8 130 aa12.83□□□□□ -0.36
SMAD4-201ENST00000342988 C6orf223Q8N319 242 aa12.82□□□□□ -0.36
SMAD4-201ENST00000342988 FSTL3O95633 263 aa12.82□□□□□ -0.36
SMAD4-201ENST00000342988 IGLV2-8P01709 118 aa12.82□□□□□ -0.36
SMAD4-201ENST00000342988 LINC00574Q9H8X3 128 aa12.82□□□□□ -0.36
SMAD4-201ENST00000342988 CRIP2P52943 208 aaPredicted RBP12.81□□□□□ -0.36
SMAD4-201ENST00000342988 FRMD6-AS1P0C7T7 363 aa12.81□□□□□ -0.36
SMAD4-201ENST00000342988 COL4A1P02462 1669 aa12.81□□□□□ -0.36
SMAD4-201ENST00000342988 PROK1P58294 105 aa12.8□□□□□ -0.36
SMAD4-201ENST00000342988 COL4A4P53420 1690 aaPredicted RBP12.8□□□□□ -0.36
SMAD4-201ENST00000342988 OXLD1Q5BKU9 147 aa12.8□□□□□ -0.36
SMAD4-201ENST00000342988 A0A087WVE0 104 aa12.79□□□□□ -0.36
SMAD4-201ENST00000342988 RPS28P62857 69 aaKnown RBP12.79□□□□□ -0.36
SMAD4-201ENST00000342988 Q6ZS46 218 aa12.79□□□□□ -0.36
SMAD4-201ENST00000342988 LUZP6Q538Z0 58 aa12.79□□□□□ -0.36
SMAD4-201ENST00000342988 KLLNB2CW77 178 aa12.77□□□□□ -0.36
SMAD4-201ENST00000342988 MTORP42345 2549 aa12.77□□□□□ -0.37
SMAD4-201ENST00000342988 PSMG3-AS1Q96PY0 264 aa12.76□□□□□ -0.37
SMAD4-201ENST00000342988 INAFM1C9JVW0 142 aa12.76□□□□□ -0.37
SMAD4-201ENST00000342988 NAV2Q8IVL1 2488 aa12.76□□□□□ -0.37
SMAD4-201ENST00000342988 CRIP1P50238 77 aa12.76□□□□□ -0.37
SMAD4-201ENST00000342988 UNQ6190/PRO20217Q6UXQ8 127 aa12.76□□□□□ -0.37
SMAD4-201ENST00000342988 BCE1O60756 84 aa12.75□□□□□ -0.37
SMAD4-201ENST00000342988 LINC01561Q8N1V8 128 aa12.75□□□□□ -0.37
SMAD4-201ENST00000342988 CNFNQ9BYD5 112 aa12.75□□□□□ -0.37
SMAD4-201ENST00000342988 DEFB116Q30KQ4 102 aa12.75□□□□□ -0.37
SMAD4-201ENST00000342988 PLA2G2EQ9NZK7 142 aa12.74□□□□□ -0.37
SMAD4-201ENST00000342988 LINC00313P59037 77 aa12.73□□□□□ -0.37
SMAD4-201ENST00000342988 POLR2KP53803 58 aaKnown RBP12.73□□□□□ -0.37
SMAD4-201ENST00000342988 C1orf134Q5TEV5 83 aa12.72□□□□□ -0.37
SMAD4-201ENST00000342988 JMJD1CQ15652 2540 aa12.72□□□□□ -0.37
SMAD4-201ENST00000342988 IGLV2-11P01706 119 aa12.72□□□□□ -0.37
SMAD4-201ENST00000342988 EDN2P20800 178 aa12.71□□□□□ -0.37
SMAD4-201ENST00000342988 C9orf116Q5BN46 136 aaPredicted RBP12.71□□□□□ -0.37
SMAD4-201ENST00000342988 Q9UF83 564 aa12.71□□□□□ -0.37
SMAD4-201ENST00000342988 IGLV8-61A0A075B6I0 122 aa12.71□□□□□ -0.38
SMAD4-201ENST00000342988 SMIM1B2RUZ4 78 aa12.69□□□□□ -0.38
SMAD4-201ENST00000342988 SMIM29Q86T20 159 aa12.69□□□□□ -0.38
SMAD4-201ENST00000342988 C11orf1Q9H5F2 150 aa12.69□□□□□ -0.38
SMAD4-201ENST00000342988 A0A1B0GUV1 79 aa12.69□□□□□ -0.38
SMAD4-201ENST00000342988 IGIPA6NJ69 53 aa12.68□□□□□ -0.38
SMAD4-201ENST00000342988 LINC01554Q52M75 96 aa12.68□□□□□ -0.38
SMAD4-201ENST00000342988 CYP4F30PQ9H0H9 118 aa12.67□□□□□ -0.38
SMAD4-201ENST00000342988 LINC00242Q5T6M2 205 aa12.67□□□□□ -0.38
SMAD4-201ENST00000342988 FHL2Q14192 279 aa12.66□□□□□ -0.38
SMAD4-201ENST00000342988 LMO4P61968 165 aa12.66□□□□□ -0.38
SMAD4-201ENST00000342988 PRR3P79522 188 aaKnown RBP12.66□□□□□ -0.38
SMAD4-201ENST00000342988 UQCR11O14957 56 aa12.66□□□□□ -0.38
SMAD4-201ENST00000342988 Q6ZSV7 163 aa12.66□□□□□ -0.38
SMAD4-201ENST00000342988 SPACA4Q8TDM5 124 aa12.65□□□□□ -0.38
SMAD4-201ENST00000342988 COX6A2Q02221 97 aa12.64□□□□□ -0.39
SMAD4-201ENST00000342988 C11orf71Q6IPW1 123 aa12.63□□□□□ -0.39
SMAD4-201ENST00000342988 MDFIQ99750 246 aa12.63□□□□□ -0.39
SMAD4-201ENST00000342988 C4orf26Q17RF5 130 aa12.62□□□□□ -0.39
SMAD4-201ENST00000342988 MOBPQ13875 183 aa12.62□□□□□ -0.39
SMAD4-201ENST00000342988 LINC00846Q9NV44 126 aa12.61□□□□□ -0.39
SMAD4-201ENST00000342988 LINC01600Q96MT4 127 aa12.61□□□□□ -0.39
SMAD4-201ENST00000342988 ERC2-IT1O76042 136 aa12.6□□□□□ -0.39
SMAD4-201ENST00000342988 LY6G6DO95868 133 aa12.58□□□□□ -0.4
SMAD4-201ENST00000342988 NHLRC4P0CG21 123 aaPredicted RBP12.57□□□□□ -0.4
SMAD4-201ENST00000342988 LOC101927531A0A1B0GV80 90 aa12.57□□□□□ -0.4
SMAD4-201ENST00000342988 EPM2AB3EWF7 344 aa12.57□□□□□ -0.4
SMAD4-201ENST00000342988 APLNQ9ULZ1 77 aa12.56□□□□□ -0.4
SMAD4-201ENST00000342988 FAM229AH3BQW9 127 aa12.56□□□□□ -0.4
SMAD4-201ENST00000342988 USP24Q9UPU5 2620 aa12.56□□□□□ -0.4
SMAD4-201ENST00000342988 AMELXQ99217 191 aa12.55□□□□□ -0.4
SMAD4-201ENST00000342988 SMCR5Q8TEV8 140 aa12.53□□□□□ -0.4
SMAD4-201ENST00000342988 C11orf72Q8NBR9 251 aa12.53□□□□□ -0.4
SMAD4-201ENST00000342988 ADAMTSL4-AS1Q5T5F5 129 aa12.52□□□□□ -0.4
SMAD4-201ENST00000342988 BPTFQ12830 3046 aa12.52□□□□□ -0.4
SMAD4-201ENST00000342988 CD164Q04900 197 aa12.52□□□□□ -0.4
SMAD4-201ENST00000342988 KIAA0087Q14695 138 aa12.52□□□□□ -0.41
SMAD4-201ENST00000342988 LINC01006Q8NI28 216 aa12.52□□□□□ -0.41
SMAD4-201ENST00000342988 IGLV1-40P01703 118 aa12.5□□□□□ -0.41
SMAD4-201ENST00000342988 MIR22HGQ0VDD5 57 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms