RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 C6orf226Q5I0X4 101 aa11.67□□□□□ -0.54
CLDN4-201ENST00000340958 LINC01561Q8N1V8 128 aa11.67□□□□□ -0.54
CLDN4-201ENST00000340958 SMIM13P0DJ93 91 aa11.67□□□□□ -0.54
CLDN4-201ENST00000340958 FXYD2P54710 66 aa11.67□□□□□ -0.54
CLDN4-201ENST00000340958 RAB37Q96AX2 223 aa11.67□□□□□ -0.54
CLDN4-201ENST00000340958 NAA38Q9BRA0 125 aaKnown RBP11.67□□□□□ -0.54
CLDN4-201ENST00000340958 NDUFA1O15239 70 aa11.66□□□□□ -0.54
CLDN4-201ENST00000340958 CFAP161Q6P656 301 aa11.66□□□□□ -0.54
CLDN4-201ENST00000340958 TM2D2Q9BX73 214 aa11.66□□□□□ -0.54
CLDN4-201ENST00000340958 A0A0J9YXY3 114 aa11.65□□□□□ -0.54
CLDN4-201ENST00000340958 IBA57-AS1B1ANH7 110 aa11.65□□□□□ -0.54
CLDN4-201ENST00000340958 ZNF625Q96I27 306 aaPredicted RBP11.65□□□□□ -0.54
CLDN4-201ENST00000340958 GCSHP23434 173 aa11.65□□□□□ -0.55
CLDN4-201ENST00000340958 CKS1BP61024 79 aa11.64□□□□□ -0.55
CLDN4-201ENST00000340958 CIRBPQ14011 172 aaKnown RBP11.64□□□□□ -0.55
CLDN4-201ENST00000340958 MEIG1Q5JSS6 88 aa11.64□□□□□ -0.55
CLDN4-201ENST00000340958 CEND1Q8N111 149 aa11.64□□□□□ -0.55
CLDN4-201ENST00000340958 RMI2Q96E14 147 aa11.64□□□□□ -0.55
CLDN4-201ENST00000340958 RYR3Q15413 4870 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 TMEM238C9JI98 176 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 TAL2Q16559 108 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 VPS25Q9BRG1 176 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 SPCS1Q9Y6A9 102 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 SACSQ9NZJ4 4579 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 HERV-K104P63124 156 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 Q8IZM0 81 aa11.63□□□□□ -0.55
CLDN4-201ENST00000340958 FABP2P12104 132 aa11.62□□□□□ -0.55
CLDN4-201ENST00000340958 SPAG11BQ08648 103 aa11.6□□□□□ -0.55
CLDN4-201ENST00000340958 SFTA2Q6UW10 78 aa11.6□□□□□ -0.55
CLDN4-201ENST00000340958 ALMS1Q8TCU4 4167 aa11.6□□□□□ -0.55
CLDN4-201ENST00000340958 A0A0U1RRA0 63 aa11.59□□□□□ -0.55
CLDN4-201ENST00000340958 SPANXB1Q9NS25 103 aaPredicted RBP11.59□□□□□ -0.55
CLDN4-201ENST00000340958 K7ERJ3 54 aa11.58□□□□□ -0.56
CLDN4-201ENST00000340958 CXCL5P42830 114 aa11.58□□□□□ -0.56
CLDN4-201ENST00000340958 NHP2Q9NX24 153 aaKnown RBP11.58□□□□□ -0.56
CLDN4-201ENST00000340958 RYR2Q92736 4967 aa11.58□□□□□ -0.56
CLDN4-201ENST00000340958 LCE6AA0A183 80 aa11.58□□□□□ -0.56
CLDN4-201ENST00000340958 ZNF561-AS1K7EIQ3 104 aa11.57□□□□□ -0.56
CLDN4-201ENST00000340958 KRTAP26-1Q6PEX3 210 aa11.57□□□□□ -0.56
CLDN4-201ENST00000340958 C2orf82Q6UX34 121 aa11.57□□□□□ -0.56
CLDN4-201ENST00000340958 DNAH1Q9P2D7 4330 aa11.56□□□□□ -0.56
CLDN4-201ENST00000340958 HYDINQ4G0P3 5121 aa11.56□□□□□ -0.56
CLDN4-201ENST00000340958 TIMM17BO60830 172 aa11.56□□□□□ -0.56
CLDN4-201ENST00000340958 TTC32Q5I0X7 151 aa11.56□□□□□ -0.56
CLDN4-201ENST00000340958 HIGD2BQ4VC39 106 aa11.56□□□□□ -0.56
CLDN4-201ENST00000340958 LINC00158P58513 81 aa11.55□□□□□ -0.56
CLDN4-201ENST00000340958 NPC2P61916 151 aa11.55□□□□□ -0.56
CLDN4-201ENST00000340958 KIAA0087Q14695 138 aa11.55□□□□□ -0.56
CLDN4-201ENST00000340958 ADAMTSL4-AS1Q5T5F5 129 aa11.55□□□□□ -0.56
CLDN4-201ENST00000340958 DAND5Q8N907 189 aa11.55□□□□□ -0.56
CLDN4-201ENST00000340958 LINC00526Q96FQ7 95 aa11.55□□□□□ -0.56
CLDN4-201ENST00000340958 TMEM238LA0A1B0GVL6 79 aa11.54□□□□□ -0.56
CLDN4-201ENST00000340958 A0A1B0GWB2 263 aa11.54□□□□□ -0.56
CLDN4-201ENST00000340958 A6NJY4 79 aa11.54□□□□□ -0.56
CLDN4-201ENST00000340958 PFN2P35080 140 aa11.54□□□□□ -0.56
CLDN4-201ENST00000340958 PSCAO43653 123 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 C6orf223Q8N319 242 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 LITAFQ99732 161 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 KRTAP1-5Q9BYS1 174 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 NBDYA0A0U1RRE5 68 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 MUSTN1Q8IVN3 82 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 SPANXDQ9BXN6 97 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 SPANXCQ9NY87 97 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 ERG28Q9UKR5 140 aa11.53□□□□□ -0.56
CLDN4-201ENST00000340958 RPL24P83731 157 aaKnown RBP11.52□□□□□ -0.57
CLDN4-201ENST00000340958 LINC00476Q8WZB0 136 aa11.52□□□□□ -0.57
CLDN4-201ENST00000340958 COPS9Q8WXC6 57 aa11.51□□□□□ -0.57
CLDN4-201ENST00000340958 CAMK2N2Q96S95 79 aa11.51□□□□□ -0.57
CLDN4-201ENST00000340958 UNQ6190/PRO20217Q6UXQ8 127 aa11.51□□□□□ -0.57
CLDN4-201ENST00000340958 C15orf56Q8N910 161 aa11.51□□□□□ -0.57
CLDN4-201ENST00000340958 NTN5Q8WTR8 489 aaPredicted RBP11.5□□□□□ -0.57
CLDN4-201ENST00000340958 KMT2AQ03164 3969 aa11.5□□□□□ -0.57
CLDN4-201ENST00000340958 M0R2N4 97 aa11.49□□□□□ -0.57
CLDN4-201ENST00000340958 LY6G6CO95867 125 aa11.49□□□□□ -0.57
CLDN4-201ENST00000340958 IFITM1P13164 125 aa11.49□□□□□ -0.57
CLDN4-201ENST00000340958 USP17L23D6RBM5 183 aa11.49□□□□□ -0.57
CLDN4-201ENST00000340958 MIR7-3HGQ8N6C7 128 aa11.49□□□□□ -0.57
CLDN4-201ENST00000340958 F8W1H4 67 aa11.48□□□□□ -0.57
CLDN4-201ENST00000340958 GVQW2A0A096LPI5 108 aaPredicted RBP11.47□□□□□ -0.57
CLDN4-201ENST00000340958 LECT2O14960 151 aa11.47□□□□□ -0.57
CLDN4-201ENST00000340958 C10orf25Q5T742 122 aa11.47□□□□□ -0.57
CLDN4-201ENST00000340958 LINC00308Q8TCZ7 52 aa11.47□□□□□ -0.57
CLDN4-201ENST00000340958 A4D1N5 150 aa11.46□□□□□ -0.57
CLDN4-201ENST00000340958 C9orf116Q5BN46 136 aaPredicted RBP11.46□□□□□ -0.57
CLDN4-201ENST00000340958 VPS13DQ5THJ4 4388 aa11.46□□□□□ -0.57
CLDN4-201ENST00000340958 COX17Q14061 63 aa11.46□□□□□ -0.58
CLDN4-201ENST00000340958 C2orf48Q96LS8 159 aa11.46□□□□□ -0.58
CLDN4-201ENST00000340958 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.44□□□□□ -0.58
CLDN4-201ENST00000340958 F8WDY8 70 aa11.44□□□□□ -0.58
CLDN4-201ENST00000340958 TRBV30A0A0K0K1B3 111 aa11.43□□□□□ -0.58
CLDN4-201ENST00000340958 H3BMG7 143 aa11.43□□□□□ -0.58
CLDN4-201ENST00000340958 SYCNQ0VAF6 134 aa11.43□□□□□ -0.58
CLDN4-201ENST00000340958 WFDC2Q14508 124 aa11.43□□□□□ -0.58
CLDN4-201ENST00000340958 C6orf48Q9UBA6 75 aa11.43□□□□□ -0.58
CLDN4-201ENST00000340958 PRO0461Q9UI25 63 aa11.43□□□□□ -0.58
CLDN4-201ENST00000340958 Q6ZRU5 148 aa11.42□□□□□ -0.58
CLDN4-201ENST00000340958 SCGB1A1P11684 91 aa11.42□□□□□ -0.58
CLDN4-201ENST00000340958 CFC1BP0CG36 223 aa11.41□□□□□ -0.58
CLDN4-201ENST00000340958 CFC1P0CG37 223 aa11.41□□□□□ -0.58
CLDN4-201ENST00000340958 J3QR89 54 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms