RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ADAMTSL4-AS1Q5T5F5 129 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 COX7B2Q8TF08 81 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 LITAFQ99732 161 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 Q9HAA7 133 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 K7ERJ3 54 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 SRSF9Q13242 221 aaKnown RBP eCLIP2.78□□□□□ -1.97
MCF2-201ENST00000338585 LCE5AQ5TCM9 118 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 KRTAP26-1Q6PEX3 210 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 C2orf82Q6UX34 121 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 CEND1Q8N111 149 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 DAND5Q8N907 189 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 ORAOV1Q8WV07 137 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 LINC00526Q96FQ7 95 aa2.78□□□□□ -1.97
MCF2-201ENST00000338585 A0A1B0GV90 55 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 EIF4EBP3O60516 100 aaPredicted RBP2.77□□□□□ -1.97
MCF2-201ENST00000338585 MALP21145 153 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 NPC2P61916 151 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 COL5A1-AS1Q5SY13 56 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 TM2D2Q9BX73 214 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 NUPR2A6NF83 97 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 PTTG1IPP53801 180 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 KIAA0087Q14695 138 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 TAL2Q16559 108 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 MIAQ16674 131 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 UPK3BQ9BT76 320 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 KRTAP1-5Q9BYS1 174 aa2.77□□□□□ -1.97
MCF2-201ENST00000338585 SPANXB1Q9NS25 103 aaPredicted RBP2.77□□□□□ -1.97
MCF2-201ENST00000338585 IGKV2D-24A0A075B6R9 120 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 TRAV8-4A0A0B4J246 113 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 TAX1BP3O14907 124 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 SMIM13P0DJ93 91 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 LBHQ53QV2 105 aaPredicted RBP2.76□□□□□ -1.97
MCF2-201ENST00000338585 C6orf226Q5I0X4 101 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 MEIG1Q5JSS6 88 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 CSMD3Q7Z407 3707 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 MUSTN1Q8IVN3 82 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 UBE2DNLQ8IWF7 75 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 Q8IZM0 81 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 C6orf223Q8N319 242 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 NAA38Q9BRA0 125 aaKnown RBP2.76□□□□□ -1.97
MCF2-201ENST00000338585 NHP2Q9NX24 153 aaKnown RBP2.76□□□□□ -1.97
MCF2-201ENST00000338585 IBA57-AS1B1ANH7 110 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 TMEM238C9JI98 176 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 PRSS2P07478 247 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 SPAG11BQ08648 103 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 CASC10Q5T4H9 136 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 LINC01561Q8N1V8 128 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 RAB37Q96AX2 223 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 C1orf43Q9BWL3 253 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 KLK5Q9Y337 293 aaPredicted RBP2.76□□□□□ -1.97
MCF2-201ENST00000338585 DYNC2H1Q8NCM8 4307 aaKnown RBP2.76□□□□□ -1.97
MCF2-201ENST00000338585 TENM2Q9NT68 2774 aa2.76□□□□□ -1.97
MCF2-201ENST00000338585 A4D1N5 150 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 PFN2P35080 140 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 HERV-K104P63124 156 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 HIGD2BQ4VC39 106 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 C10orf25Q5T742 122 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 SOSTDC1Q6X4U4 206 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 STARD9Q9P2P6 4700 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 A6NDN8 102 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 TIMM17BO60830 172 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 APOMO95445 188 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 CKS1BP61024 79 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 C9orf116Q5BN46 136 aaPredicted RBP2.75□□□□□ -1.97
MCF2-201ENST00000338585 UNQ6190/PRO20217Q6UXQ8 127 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 C15orf56Q8N910 161 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 SPANXDQ9BXN6 97 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 SPANXCQ9NY87 97 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 TGP01266 2768 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 LYSTQ99698 3801 aa2.75□□□□□ -1.97
MCF2-201ENST00000338585 DNAH7Q8WXX0 4024 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 LINC00158P58513 81 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 CIRBPQ14011 172 aaKnown RBP2.74□□□□□ -1.97
MCF2-201ENST00000338585 MIR7-3HGQ8N6C7 128 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 ERG28Q9UKR5 140 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 A0A1B0GWB2 263 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 CFC1BP0CG36 223 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 CFC1P0CG37 223 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 MUC7Q8TAX7 377 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 LINC00308Q8TCZ7 52 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 COX11Q9Y6N1 276 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 PLECQ15149 4684 aaKnown RBP2.74□□□□□ -1.97
MCF2-201ENST00000338585 DNAH1Q9P2D7 4330 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 LECT2O14960 151 aa2.74□□□□□ -1.97
MCF2-201ENST00000338585 NTN5Q8WTR8 489 aaPredicted RBP2.74□□□□□ -1.97
MCF2-201ENST00000338585 H3BUT2 72 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 RPL24P83731 157 aaKnown RBP2.73□□□□□ -1.97
MCF2-201ENST00000338585 WFDC2Q14508 124 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 C6orf48Q9UBA6 75 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 C9orf118A6NHY6 69 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 USP17L23D6RBM5 183 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 IFITM1P13164 125 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 CXCL5P42830 114 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 SFTA2Q6UW10 78 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 Q6ZRU5 148 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 CAMK2N2Q96S95 79 aa2.73□□□□□ -1.97
MCF2-201ENST00000338585 GVQW2A0A096LPI5 108 aaPredicted RBP2.72□□□□□ -1.97
MCF2-201ENST00000338585 NBDYA0A0U1RRE5 68 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 H7C2G1 150 aa2.72□□□□□ -1.97
MCF2-201ENST00000338585 M0R2N4 97 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms