RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 MUSTN1Q8IVN3 82 aa4.9□□□□□ -1.63
SF3B1-201ENST00000335508 ADGRG4Q8IZF6 3080 aa4.9□□□□□ -1.63
SF3B1-201ENST00000335508 FXYD2P54710 66 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 EGFEM1PQ0D2K5 195 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 FAM19A5Q7Z5A7 132 aaPredicted RBP4.89□□□□□ -1.63
SF3B1-201ENST00000335508 AMELXQ99217 191 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 XIRP2A4UGR9 3374 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 A0A087WZ39 114 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 LINC01561Q8N1V8 128 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 CARD19Q96LW7 228 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 K7EP34 96 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 SPATA3Q8NHX4 192 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 TMEM223A0PJW6 202 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 WIPF1O43516 503 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 URB1-AS1Q96HZ7 61 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 IGLV2-18A0A075B6J9 118 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 A0A0B4J2C4 111 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 A8MZ25 164 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 C4orf26Q17RF5 130 aa4.89□□□□□ -1.63
SF3B1-201ENST00000335508 ASH1LQ9NR48 2969 aaKnown RBP4.88□□□□□ -1.63
SF3B1-201ENST00000335508 X6R8D5 127 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 COL27A1Q8IZC6 1860 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-201ENST00000335508 A0A096LNJ9 63 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 SMIM26A0A096LP01 95 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 JMJD7-PLA2G4BH0Y9G9 81 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 A0A0J9YWU9 116 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 GAS8-AS1O95177 125 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 POM121L12Q8N7R1 296 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 IGLV4-69A0A075B6H9 119 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 XGP55808 180 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 LINC01620Q4KN68 170 aa4.88□□□□□ -1.63
SF3B1-201ENST00000335508 UBL5Q9BZL1 73 aa4.87□□□□□ -1.63
SF3B1-201ENST00000335508 UBE2D1P51668 147 aa4.87□□□□□ -1.63
SF3B1-201ENST00000335508 CRYBG3Q68DQ2 2970 aa4.87□□□□□ -1.63
SF3B1-201ENST00000335508 LINC00308Q8TCZ7 52 aa4.87□□□□□ -1.63
SF3B1-201ENST00000335508 DIRC1Q969H9 104 aa4.87□□□□□ -1.63
SF3B1-201ENST00000335508 IGKV2D-26A0A0A0MRZ7 120 aa4.87□□□□□ -1.63
SF3B1-201ENST00000335508 ZNF706Q9Y5V0 76 aaPredicted RBP4.87□□□□□ -1.63
SF3B1-201ENST00000335508 PRM2P04554 102 aa4.87□□□□□ -1.63
SF3B1-201ENST00000335508 COX17Q14061 63 aa4.86□□□□□ -1.63
SF3B1-201ENST00000335508 C19orf73Q9NVV2 129 aa4.86□□□□□ -1.63
SF3B1-201ENST00000335508 NANOS2P60321 138 aaKnown RBP4.86□□□□□ -1.63
SF3B1-201ENST00000335508 TEN1Q86WV5 123 aa4.86□□□□□ -1.63
SF3B1-201ENST00000335508 ORMDL1Q9P0S3 153 aa4.86□□□□□ -1.63
SF3B1-201ENST00000335508 MXRA5Q9NR99 2828 aa4.86□□□□□ -1.63
SF3B1-201ENST00000335508 A0A1B0GX51 115 aa4.86□□□□□ -1.63
SF3B1-201ENST00000335508 SMIM1B2RUZ4 78 aa4.86□□□□□ -1.63
SF3B1-201ENST00000335508 IGHV3OR16-9A0A0B4J2B5 98 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 FUSP35637 526 aaKnown RBP eCLIP4.85□□□□□ -1.63
SF3B1-201ENST00000335508 C2orf48Q96LS8 159 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 DCHS2Q6V1P9 2916 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 RPL18AQ02543 176 aaKnown RBP4.85□□□□□ -1.63
SF3B1-201ENST00000335508 LOC100131303A0A0U1RQF7 123 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 H3BMG7 143 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 PMAIP1Q13794 54 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 ACYP1P07311 99 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 LINC01556Q5JQF7 62 aa4.85□□□□□ -1.63
SF3B1-201ENST00000335508 LINC00474Q9P2X8 69 aa4.84□□□□□ -1.63
SF3B1-201ENST00000335508 TRBV30A0A0K0K1B3 111 aa4.84□□□□□ -1.63
SF3B1-201ENST00000335508 MT-ATP8P03928 68 aa4.84□□□□□ -1.63
SF3B1-201ENST00000335508 B9D2Q9BPU9 175 aa4.84□□□□□ -1.63
SF3B1-201ENST00000335508 Q8NAQ8 132 aa4.84□□□□□ -1.63
SF3B1-201ENST00000335508 NDUFV3P56181 108 aaKnown RBP4.84□□□□□ -1.64
SF3B1-201ENST00000335508 NTN5Q8WTR8 489 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-201ENST00000335508 HIGD2BQ4VC39 106 aa4.83□□□□□ -1.64
SF3B1-201ENST00000335508 LYPD5Q6UWN5 251 aa4.83□□□□□ -1.64
SF3B1-201ENST00000335508 LECT2O14960 151 aa4.83□□□□□ -1.64
SF3B1-201ENST00000335508 FREM2Q5SZK8 3169 aa4.83□□□□□ -1.64
SF3B1-201ENST00000335508 CYSRT1A8MQ03 144 aa4.83□□□□□ -1.64
SF3B1-201ENST00000335508 BAALC-AS2P0C853 105 aa4.83□□□□□ -1.64
SF3B1-201ENST00000335508 LINC00612Q8N6U2 182 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 DAND5Q8N907 189 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 XAGE1AQ9HD64 81 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 DSCR8Q96T75 97 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 IGKV2-24A0A0C4DH68 120 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 IGLV5-39A0A0G2JS06 123 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 TAX1BP3O14907 124 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 COX7BP24311 80 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 IGLV5-45A0A087WSX0 123 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 NDUFS5O43920 106 aa4.82□□□□□ -1.64
SF3B1-201ENST00000335508 IGLV4-60A0A075B6I1 120 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 TMEM258P61165 79 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 LINC01546A6NGU7 62 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 USP17L23D6RBM5 183 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 M0R378 163 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 CSNK1G2-AS1Q8NCQ2 148 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 TMEM256-PLSCR3K7ERE1 68 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 TRBV10-2A0A0K0K1G8 114 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 LRCOL1A6NCL2 159 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 MAPKAPK5-AS1Q8N8E1 139 aa4.81□□□□□ -1.64
SF3B1-201ENST00000335508 UBE2AP49459 152 aa4.8□□□□□ -1.64
SF3B1-201ENST00000335508 C6orf99Q4VX62 202 aa4.8□□□□□ -1.64
SF3B1-201ENST00000335508 NTM-AS1Q6ZSK4 140 aa4.8□□□□□ -1.64
SF3B1-201ENST00000335508 DEFB105AQ8NG35 78 aa4.8□□□□□ -1.64
SF3B1-201ENST00000335508 Q6ZSN1 163 aa4.8□□□□□ -1.64
SF3B1-201ENST00000335508 UNQ6190/PRO20217Q6UXQ8 127 aa4.79□□□□□ -1.64
SF3B1-201ENST00000335508 C2orf91Q6ZV80 131 aa4.79□□□□□ -1.64
SF3B1-201ENST00000335508 HIGD2AQ9BW72 106 aa4.79□□□□□ -1.64
SF3B1-201ENST00000335508 A6NED7 52 aa4.79□□□□□ -1.64
SF3B1-201ENST00000335508 LRBAP50851 2863 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms