RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 STAB1Q9NY15 2570 aa11.19□□□□□ -0.62
USHBP1-202ENST00000324554 BAALC-AS2P0C853 105 aa11.19□□□□□ -0.62
USHBP1-202ENST00000324554 X6R8D5 127 aa11.19□□□□□ -0.62
USHBP1-202ENST00000324554 KRTAP24-1Q3LI83 254 aa11.18□□□□□ -0.62
USHBP1-202ENST00000324554 SND1-IT1Q9HBX3 110 aa11.18□□□□□ -0.62
USHBP1-202ENST00000324554 A0A087WZ39 114 aa11.18□□□□□ -0.62
USHBP1-202ENST00000324554 TRAV13-2A0A0B4J235 113 aa11.18□□□□□ -0.62
USHBP1-202ENST00000324554 CRPP02741 224 aa11.18□□□□□ -0.62
USHBP1-202ENST00000324554 CCDC179H3BU77 68 aa11.17□□□□□ -0.62
USHBP1-202ENST00000324554 GYPEP15421 78 aa11.17□□□□□ -0.62
USHBP1-202ENST00000324554 RPL28P46779 137 aaKnown RBP11.17□□□□□ -0.62
USHBP1-202ENST00000324554 Q9HAA7 133 aa11.17□□□□□ -0.62
USHBP1-202ENST00000324554 B5MCH6 92 aa11.17□□□□□ -0.62
USHBP1-202ENST00000324554 LINC00158P58513 81 aa11.17□□□□□ -0.62
USHBP1-202ENST00000324554 C5orf38Q86SI9 138 aa11.17□□□□□ -0.62
USHBP1-202ENST00000324554 FAM222AQ5U5X8 452 aa11.16□□□□□ -0.62
USHBP1-202ENST00000324554 SMCR5Q8TEV8 140 aa11.16□□□□□ -0.62
USHBP1-202ENST00000324554 LINC00959A0A1B0GUT2 108 aa11.16□□□□□ -0.62
USHBP1-202ENST00000324554 CCL18P55774 89 aa11.16□□□□□ -0.62
USHBP1-202ENST00000324554 TRBV7-7A0A0K0K1E9 115 aa11.15□□□□□ -0.63
USHBP1-202ENST00000324554 C9orf66Q5T8R8 295 aa11.15□□□□□ -0.63
USHBP1-202ENST00000324554 SS18L2Q9UHA2 77 aa11.15□□□□□ -0.63
USHBP1-202ENST00000324554 MAST4O15021 2626 aa11.14□□□□□ -0.63
USHBP1-202ENST00000324554 ACYP1P07311 99 aa11.14□□□□□ -0.63
USHBP1-202ENST00000324554 SMIM11BQ8TCY0 68 aa11.14□□□□□ -0.63
USHBP1-202ENST00000324554 PKD1L1Q8TDX9 2849 aa11.14□□□□□ -0.63
USHBP1-202ENST00000324554 PFN2P35080 140 aa11.14□□□□□ -0.63
USHBP1-202ENST00000324554 SMIM9A6NGZ8 99 aa11.13□□□□□ -0.63
USHBP1-202ENST00000324554 PRO0255Q9UI72 69 aa11.13□□□□□ -0.63
USHBP1-202ENST00000324554 A0A087WYN8 130 aa11.13□□□□□ -0.63
USHBP1-202ENST00000324554 IBA57-AS1B1ANH7 110 aa11.13□□□□□ -0.63
USHBP1-202ENST00000324554 A0A1B0GUV1 79 aa11.12□□□□□ -0.63
USHBP1-202ENST00000324554 C11orf68Q9H3H3 251 aaKnown RBP11.11□□□□□ -0.63
USHBP1-202ENST00000324554 A0A096LPF7 62 aa11.11□□□□□ -0.63
USHBP1-202ENST00000324554 MALP21145 153 aa11.11□□□□□ -0.63
USHBP1-202ENST00000324554 XCL1P47992 114 aa11.1□□□□□ -0.63
USHBP1-202ENST00000324554 OXLD1Q5BKU9 147 aa11.09□□□□□ -0.63
USHBP1-202ENST00000324554 C9orf129Q5T035 196 aaKnown RBP11.09□□□□□ -0.63
USHBP1-202ENST00000324554 SDIM1Q6ZPB5 146 aa11.09□□□□□ -0.63
USHBP1-202ENST00000324554 COL6A5A8TX70 2615 aa11.09□□□□□ -0.63
USHBP1-202ENST00000324554 CLPSL2Q6UWE3 100 aa11.09□□□□□ -0.63
USHBP1-202ENST00000324554 LYRM9A8MSI8 78 aa11.08□□□□□ -0.64
USHBP1-202ENST00000324554 SS18Q15532 418 aa11.08□□□□□ -0.64
USHBP1-202ENST00000324554 C3orf56Q8N813 242 aa11.08□□□□□ -0.64
USHBP1-202ENST00000324554 PAX4O43316 350 aa11.08□□□□□ -0.64
USHBP1-202ENST00000324554 ATP5G1P05496 136 aa11.08□□□□□ -0.64
USHBP1-202ENST00000324554 C6orf226Q5I0X4 101 aa11.08□□□□□ -0.64
USHBP1-202ENST00000324554 DEFB135Q30KP9 77 aa11.07□□□□□ -0.64
USHBP1-202ENST00000324554 LINC00643Q86TS7 51 aa11.07□□□□□ -0.64
USHBP1-202ENST00000324554 DEFB4AO15263 64 aa11.07□□□□□ -0.64
USHBP1-202ENST00000324554 GAGE2AQ6NT46 116 aa11.07□□□□□ -0.64
USHBP1-202ENST00000324554 INAFM2P0DMQ5 153 aa11.06□□□□□ -0.64
USHBP1-202ENST00000324554 FAM236AA0A1B0GUQ0 79 aa11.06□□□□□ -0.64
USHBP1-202ENST00000324554 FAM236BA0A1B0GV22 79 aa11.06□□□□□ -0.64
USHBP1-202ENST00000324554 DNAL4O96015 105 aa11.06□□□□□ -0.64
USHBP1-202ENST00000324554 Q8IZM0 81 aa11.06□□□□□ -0.64
USHBP1-202ENST00000324554 WFDC9Q8NEX5 89 aa11.06□□□□□ -0.64
USHBP1-202ENST00000324554 OR13C6PQ8NH95 151 aa11.05□□□□□ -0.64
USHBP1-202ENST00000324554 IMUPQ9GZP8 106 aa11.05□□□□□ -0.64
USHBP1-202ENST00000324554 H0YGX0 51 aa11.04□□□□□ -0.64
USHBP1-202ENST00000324554 IGHV4-28A0A0C4DH34 117 aa11.04□□□□□ -0.64
USHBP1-202ENST00000324554 LECT2O14960 151 aa11.04□□□□□ -0.64
USHBP1-202ENST00000324554 LINC01561Q8N1V8 128 aa11.03□□□□□ -0.64
USHBP1-202ENST00000324554 LINC00269Q8N2A0 174 aa11.03□□□□□ -0.64
USHBP1-202ENST00000324554 C14orf132Q9NPU4 83 aa11.03□□□□□ -0.64
USHBP1-202ENST00000324554 APOC4P55056 127 aa11.02□□□□□ -0.65
USHBP1-202ENST00000324554 Q8N3U1 123 aa11.02□□□□□ -0.65
USHBP1-202ENST00000324554 SLPIP03973 132 aa11.01□□□□□ -0.65
USHBP1-202ENST00000324554 DAD1P61803 113 aa11□□□□□ -0.65
USHBP1-202ENST00000324554 CD164L2Q6UWJ8 174 aa11□□□□□ -0.65
USHBP1-202ENST00000324554 CELA1Q9UNI1 258 aa11□□□□□ -0.65
USHBP1-202ENST00000324554 KRTAP10-11P60412 298 aa11□□□□□ -0.65
USHBP1-202ENST00000324554 PRR3P79522 188 aaKnown RBP11□□□□□ -0.65
USHBP1-202ENST00000324554 OBSCN-AS1Q96MR7 158 aa11□□□□□ -0.65
USHBP1-202ENST00000324554 IGHV4-30-4P0DP06 118 aa10.99□□□□□ -0.65
USHBP1-202ENST00000324554 KIAA0087Q14695 138 aa10.99□□□□□ -0.65
USHBP1-202ENST00000324554 ANGP03950 147 aaKnown RBP10.99□□□□□ -0.65
USHBP1-202ENST00000324554 Q8NAQ8 132 aa10.99□□□□□ -0.65
USHBP1-202ENST00000324554 CHCHD10Q8WYQ3 142 aaPredicted RBP10.99□□□□□ -0.65
USHBP1-202ENST00000324554 IGLV10-54A0A075B6I4 117 aa10.98□□□□□ -0.65
USHBP1-202ENST00000324554 REG3AQ06141 175 aa10.98□□□□□ -0.65
USHBP1-202ENST00000324554 NCR3O14931 201 aa10.98□□□□□ -0.65
USHBP1-202ENST00000324554 NANOS2P60321 138 aaKnown RBP10.97□□□□□ -0.65
USHBP1-202ENST00000324554 KLK5Q9Y337 293 aaPredicted RBP10.97□□□□□ -0.65
USHBP1-202ENST00000324554 NOTCH1P46531 2555 aa10.96□□□□□ -0.65
USHBP1-202ENST00000324554 MIFP14174 115 aa10.96□□□□□ -0.65
USHBP1-202ENST00000324554 CXCL5P42830 114 aa10.96□□□□□ -0.66
USHBP1-202ENST00000324554 CFAP161Q6P656 301 aa10.95□□□□□ -0.66
USHBP1-202ENST00000324554 SVIPQ8NHG7 77 aa10.95□□□□□ -0.66
USHBP1-202ENST00000324554 C9orf116Q5BN46 136 aaPredicted RBP10.95□□□□□ -0.66
USHBP1-202ENST00000324554 LINC00846Q9NV44 126 aa10.95□□□□□ -0.66
USHBP1-202ENST00000324554 ANK2Q01484 3957 aa10.94□□□□□ -0.66
USHBP1-202ENST00000324554 COX17Q14061 63 aa10.94□□□□□ -0.66
USHBP1-202ENST00000324554 WIPF1O43516 503 aa10.94□□□□□ -0.66
USHBP1-202ENST00000324554 ORMDL1Q9P0S3 153 aa10.93□□□□□ -0.66
USHBP1-202ENST00000324554 SPART-AS1P0CW21 52 aa10.93□□□□□ -0.66
USHBP1-202ENST00000324554 Q8NDZ9 215 aa10.93□□□□□ -0.66
USHBP1-202ENST00000324554 PRB2P02812 416 aaPredicted RBP10.92□□□□□ -0.66
USHBP1-202ENST00000324554 HTN3P15516 51 aa10.92□□□□□ -0.66
USHBP1-202ENST00000324554 NDUFC2O95298 119 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms