RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 LINC00337Q8N6G1 96 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 OVOL2Q9BRP0 275 aa7.45□□□□□ -1.22
COL3A1-202ENST00000317840 CFAP161Q6P656 301 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 SHISA2Q6UWI4 295 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 SMIM11BQ8TCY0 68 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 IGLV10-54A0A075B6I4 117 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 CCL18P55774 89 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 STAB1Q9NY15 2570 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 TRBV6-4A0A1B0GX49 114 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 MRAPQ8TCY5 172 aa7.44□□□□□ -1.22
COL3A1-202ENST00000317840 HIST1H4AP62805 103 aaKnown RBP7.43□□□□□ -1.22
COL3A1-202ENST00000317840 H0YGX0 51 aa7.42□□□□□ -1.22
COL3A1-202ENST00000317840 NIPBLQ6KC79 2804 aaeCLIP7.42□□□□□ -1.22
COL3A1-202ENST00000317840 A0A087WYN8 130 aa7.42□□□□□ -1.22
COL3A1-202ENST00000317840 SDIM1Q6ZPB5 146 aa7.42□□□□□ -1.22
COL3A1-202ENST00000317840 DAD1P61803 113 aa7.42□□□□□ -1.22
COL3A1-202ENST00000317840 NCR3O14931 201 aa7.41□□□□□ -1.22
COL3A1-202ENST00000317840 RPL28P46779 137 aaKnown RBP7.41□□□□□ -1.22
COL3A1-202ENST00000317840 C9orf66Q5T8R8 295 aa7.41□□□□□ -1.22
COL3A1-202ENST00000317840 OXLD1Q5BKU9 147 aa7.41□□□□□ -1.22
COL3A1-202ENST00000317840 IBA57-AS1B1ANH7 110 aa7.4□□□□□ -1.22
COL3A1-202ENST00000317840 PRB2P02812 416 aaPredicted RBP7.4□□□□□ -1.22
COL3A1-202ENST00000317840 ANGP03950 147 aaKnown RBP7.4□□□□□ -1.22
COL3A1-202ENST00000317840 S100A7L2Q5SY68 101 aa7.4□□□□□ -1.22
COL3A1-202ENST00000317840 FAM222AQ5U5X8 452 aa7.4□□□□□ -1.22
COL3A1-202ENST00000317840 HIVEP1P15822 2718 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 ORMDL1Q9P0S3 153 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 NBEAL1Q6ZS30 2694 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 TRBV7-7A0A0K0K1E9 115 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 LINC00959A0A1B0GUT2 108 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 SMCR5Q8TEV8 140 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 TENM4Q6N022 2769 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 IGHV3OR16-9A0A0B4J2B5 98 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 IMUPQ9GZP8 106 aa7.39□□□□□ -1.23
COL3A1-202ENST00000317840 IGKV2-28A0A075B6P5 120 aa7.38□□□□□ -1.23
COL3A1-202ENST00000317840 IGKV2D-28P01615 120 aa7.38□□□□□ -1.23
COL3A1-202ENST00000317840 PRR3P79522 188 aaKnown RBP7.38□□□□□ -1.23
COL3A1-202ENST00000317840 FHL2Q14192 279 aa7.38□□□□□ -1.23
COL3A1-202ENST00000317840 FAM110AQ9BQ89 295 aa7.38□□□□□ -1.23
COL3A1-202ENST00000317840 A0A087WZ39 114 aa7.37□□□□□ -1.23
COL3A1-202ENST00000317840 LINC01600Q96MT4 127 aa7.37□□□□□ -1.23
COL3A1-202ENST00000317840 LINC00269Q8N2A0 174 aa7.37□□□□□ -1.23
COL3A1-202ENST00000317840 BAHCC1Q9P281 2608 aa7.37□□□□□ -1.23
COL3A1-202ENST00000317840 IGLV1-51P01701 117 aa7.37□□□□□ -1.23
COL3A1-202ENST00000317840 A0A1B0GX51 115 aa7.36□□□□□ -1.23
COL3A1-202ENST00000317840 GIG44P09565 113 aaPredicted RBP7.36□□□□□ -1.23
COL3A1-202ENST00000317840 APOC4P55056 127 aa7.36□□□□□ -1.23
COL3A1-202ENST00000317840 KRTAP1-1Q07627 177 aa7.36□□□□□ -1.23
COL3A1-202ENST00000317840 IL17DQ8TAD2 202 aa7.36□□□□□ -1.23
COL3A1-202ENST00000317840 PRO0255Q9UI72 69 aa7.35□□□□□ -1.23
COL3A1-202ENST00000317840 LAMTOR3Q9UHA4 124 aa7.35□□□□□ -1.23
COL3A1-202ENST00000317840 C3orf22Q8N5N4 141 aa7.35□□□□□ -1.23
COL3A1-202ENST00000317840 A0A087WVE0 104 aa7.34□□□□□ -1.23
COL3A1-202ENST00000317840 UQCRQO14949 82 aa7.34□□□□□ -1.23
COL3A1-202ENST00000317840 FAM19A3Q7Z5A8 133 aa7.34□□□□□ -1.23
COL3A1-202ENST00000317840 LINC00526Q96FQ7 95 aa7.34□□□□□ -1.23
COL3A1-202ENST00000317840 TMEM126AQ9H061 195 aa7.34□□□□□ -1.23
COL3A1-202ENST00000317840 PLAC8L1A1L4L8 177 aa7.34□□□□□ -1.23
COL3A1-202ENST00000317840 C9orf116Q5BN46 136 aaPredicted RBP7.34□□□□□ -1.23
COL3A1-202ENST00000317840 ATOX1O00244 68 aa7.33□□□□□ -1.24
COL3A1-202ENST00000317840 LINC00846Q9NV44 126 aa7.33□□□□□ -1.24
COL3A1-202ENST00000317840 C9orf129Q5T035 196 aaKnown RBP7.33□□□□□ -1.24
COL3A1-202ENST00000317840 C16orf95Q9H693 158 aa7.33□□□□□ -1.24
COL3A1-202ENST00000317840 CXCL5P42830 114 aa7.32□□□□□ -1.24
COL3A1-202ENST00000317840 CHCHD10Q8WYQ3 142 aaPredicted RBP7.32□□□□□ -1.24
COL3A1-202ENST00000317840 KLK5Q9Y337 293 aaPredicted RBP7.32□□□□□ -1.24
COL3A1-202ENST00000317840 NBPF19A0A087WUL8 3843 aa7.32□□□□□ -1.24
COL3A1-202ENST00000317840 hADV29S1A0JD25 119 aa7.31□□□□□ -1.24
COL3A1-202ENST00000317840 C6orf99Q4VX62 202 aa7.31□□□□□ -1.24
COL3A1-202ENST00000317840 REG3AQ06141 175 aa7.31□□□□□ -1.24
COL3A1-202ENST00000317840 KRTAP10-3P60369 221 aa7.3□□□□□ -1.24
COL3A1-202ENST00000317840 SPATA3Q8NHX4 192 aa7.3□□□□□ -1.24
COL3A1-202ENST00000317840 RETNQ9HD89 108 aa7.3□□□□□ -1.24
COL3A1-202ENST00000317840 Q8IZM0 81 aa7.3□□□□□ -1.24
COL3A1-202ENST00000317840 UBL5Q9BZL1 73 aa7.3□□□□□ -1.24
COL3A1-202ENST00000317840 NSD1Q96L73 2696 aaPredicted RBP7.3□□□□□ -1.24
COL3A1-202ENST00000317840 COX7CP15954 63 aa7.3□□□□□ -1.24
COL3A1-202ENST00000317840 WFDC9Q8NEX5 89 aa7.3□□□□□ -1.24
COL3A1-202ENST00000317840 Q8N3U1 123 aa7.29□□□□□ -1.24
COL3A1-202ENST00000317840 CSNK1G2-AS1Q8NCQ2 148 aa7.29□□□□□ -1.24
COL3A1-202ENST00000317840 JMJD7-PLA2G4BH0Y9G9 81 aa7.29□□□□□ -1.24
COL3A1-202ENST00000317840 TMEM256-PLSCR3K7ERE1 68 aa7.29□□□□□ -1.24
COL3A1-202ENST00000317840 SPART-AS1P0CW21 52 aa7.29□□□□□ -1.24
COL3A1-202ENST00000317840 HAMPP81172 84 aa7.29□□□□□ -1.24
COL3A1-202ENST00000317840 KLK12Q9UKR0 248 aa7.29□□□□□ -1.24
COL3A1-202ENST00000317840 IGHV4-28A0A0C4DH34 117 aa7.28□□□□□ -1.24
COL3A1-202ENST00000317840 RPL18AQ02543 176 aaKnown RBP7.28□□□□□ -1.24
COL3A1-202ENST00000317840 SPAG11BQ08648 103 aa7.28□□□□□ -1.24
COL3A1-202ENST00000317840 C19orf73Q9NVV2 129 aa7.28□□□□□ -1.24
COL3A1-202ENST00000317840 TRAV23DV6A0A075B6W5 121 aa7.28□□□□□ -1.24
COL3A1-202ENST00000317840 IGHV4-30-4P0DP06 118 aa7.28□□□□□ -1.24
COL3A1-202ENST00000317840 CD164L2Q6UWJ8 174 aa7.28□□□□□ -1.24
COL3A1-202ENST00000317840 USP17L23D6RBM5 183 aa7.27□□□□□ -1.24
COL3A1-202ENST00000317840 KIR2DL5BQ8NHK3 375 aa7.27□□□□□ -1.25
COL3A1-202ENST00000317840 Q8N814 137 aa7.27□□□□□ -1.25
COL3A1-202ENST00000317840 C22orf24Q9Y442 160 aa7.27□□□□□ -1.25
COL3A1-202ENST00000317840 A0A1B0GUV1 79 aa7.26□□□□□ -1.25
COL3A1-202ENST00000317840 ENHOQ6UWT2 76 aa7.26□□□□□ -1.25
COL3A1-202ENST00000317840 Q6JHZ5 121 aa7.26□□□□□ -1.25
COL3A1-202ENST00000317840 UNQ6190/PRO20217Q6UXQ8 127 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms