RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 PRO0255Q9UI72 69 aa9.86□□□□□ -0.83
VRK3-201ENST00000316763 IGHV4-28A0A0C4DH34 117 aa9.86□□□□□ -0.83
VRK3-201ENST00000316763 SOSTDC1Q6X4U4 206 aa9.86□□□□□ -0.83
VRK3-201ENST00000316763 NTN5Q8WTR8 489 aaPredicted RBP9.86□□□□□ -0.83
VRK3-201ENST00000316763 TOMM7Q9P0U1 55 aa9.86□□□□□ -0.83
VRK3-201ENST00000316763 IGHV3OR16-9A0A0B4J2B5 98 aa9.85□□□□□ -0.83
VRK3-201ENST00000316763 CLEC2BQ92478 149 aa9.85□□□□□ -0.83
VRK3-201ENST00000316763 MEGF8Q7Z7M0 2845 aa9.84□□□□□ -0.83
VRK3-201ENST00000316763 A0A087WZ39 114 aa9.84□□□□□ -0.83
VRK3-201ENST00000316763 A0A1B0GUV1 79 aa9.84□□□□□ -0.83
VRK3-201ENST00000316763 LINC00959A0A1B0GUT2 108 aa9.83□□□□□ -0.84
VRK3-201ENST00000316763 SS18Q15532 418 aa9.83□□□□□ -0.84
VRK3-201ENST00000316763 FAM222AQ5U5X8 452 aa9.83□□□□□ -0.84
VRK3-201ENST00000316763 UBE2WQ96B02 151 aa9.83□□□□□ -0.84
VRK3-201ENST00000316763 COX7A2LO14548 114 aa9.82□□□□□ -0.84
VRK3-201ENST00000316763 PAX4O43316 350 aa9.82□□□□□ -0.84
VRK3-201ENST00000316763 TRAV13-2A0A0B4J235 113 aa9.82□□□□□ -0.84
VRK3-201ENST00000316763 DEFB4AO15263 64 aa9.82□□□□□ -0.84
VRK3-201ENST00000316763 LINC00158P58513 81 aa9.81□□□□□ -0.84
VRK3-201ENST00000316763 IBA57-AS1B1ANH7 110 aa9.8□□□□□ -0.84
VRK3-201ENST00000316763 C5orf38Q86SI9 138 aa9.8□□□□□ -0.84
VRK3-201ENST00000316763 MIR7-3HGQ8N6C7 128 aa9.8□□□□□ -0.84
VRK3-201ENST00000316763 B9D2Q9BPU9 175 aa9.8□□□□□ -0.84
VRK3-201ENST00000316763 RETNQ9HD89 108 aa9.8□□□□□ -0.84
VRK3-201ENST00000316763 TEX49A0A1B0GTD5 131 aa9.79□□□□□ -0.84
VRK3-201ENST00000316763 CRPP02741 224 aa9.79□□□□□ -0.84
VRK3-201ENST00000316763 TM2D3Q9BRN9 247 aa9.79□□□□□ -0.84
VRK3-201ENST00000316763 CELA1Q9UNI1 258 aa9.79□□□□□ -0.84
VRK3-201ENST00000316763 TRAV8-4A0A0B4J246 113 aa9.78□□□□□ -0.84
VRK3-201ENST00000316763 SPART-AS1P0CW21 52 aa9.78□□□□□ -0.84
VRK3-201ENST00000316763 DAD1P61803 113 aa9.78□□□□□ -0.84
VRK3-201ENST00000316763 C6orf226Q5I0X4 101 aa9.78□□□□□ -0.84
VRK3-201ENST00000316763 LINC01561Q8N1V8 128 aa9.78□□□□□ -0.84
VRK3-201ENST00000316763 SND1-IT1Q9HBX3 110 aa9.78□□□□□ -0.84
VRK3-201ENST00000316763 MT-ATP8P03928 68 aa9.77□□□□□ -0.85
VRK3-201ENST00000316763 XCL1P47992 114 aa9.77□□□□□ -0.85
VRK3-201ENST00000316763 XGP55808 180 aa9.77□□□□□ -0.85
VRK3-201ENST00000316763 C11orf68Q9H3H3 251 aaKnown RBP9.77□□□□□ -0.85
VRK3-201ENST00000316763 A0A096LPF7 62 aa9.76□□□□□ -0.85
VRK3-201ENST00000316763 TRACP01848 142 aa9.76□□□□□ -0.85
VRK3-201ENST00000316763 ATP5G1P05496 136 aa9.75□□□□□ -0.85
VRK3-201ENST00000316763 RPL28P46779 137 aaKnown RBP9.75□□□□□ -0.85
VRK3-201ENST00000316763 Q8IZM0 81 aa9.75□□□□□ -0.85
VRK3-201ENST00000316763 PRKDCP78527 4128 aaKnown RBP9.75□□□□□ -0.85
VRK3-201ENST00000316763 FBN3Q75N90 2809 aa9.75□□□□□ -0.85
VRK3-201ENST00000316763 TRAV26-1A0A087WT03 109 aa9.74□□□□□ -0.85
VRK3-201ENST00000316763 PFN2P35080 140 aa9.74□□□□□ -0.85
VRK3-201ENST00000316763 CCL18P55774 89 aa9.74□□□□□ -0.85
VRK3-201ENST00000316763 TENM3Q9P273 2699 aa9.74□□□□□ -0.85
VRK3-201ENST00000316763 CLPSL2Q6UWE3 100 aa9.73□□□□□ -0.85
VRK3-201ENST00000316763 COL7A1Q02388 2944 aa9.72□□□□□ -0.85
VRK3-201ENST00000316763 IGKV2-28A0A075B6P5 120 aa9.72□□□□□ -0.85
VRK3-201ENST00000316763 A0A1B0GV72 72 aa9.72□□□□□ -0.85
VRK3-201ENST00000316763 IGKV2D-28P01615 120 aa9.72□□□□□ -0.85
VRK3-201ENST00000316763 NHLRC4P0CG21 123 aaPredicted RBP9.72□□□□□ -0.85
VRK3-201ENST00000316763 LINC00337Q8N6G1 96 aa9.72□□□□□ -0.85
VRK3-201ENST00000316763 MRPL23Q16540 153 aaKnown RBP9.72□□□□□ -0.85
VRK3-201ENST00000316763 CD164L2Q6UWJ8 174 aa9.72□□□□□ -0.85
VRK3-201ENST00000316763 LINC00269Q8N2A0 174 aa9.72□□□□□ -0.85
VRK3-201ENST00000316763 DNAH9Q9NYC9 4486 aa9.71□□□□□ -0.85
VRK3-201ENST00000316763 SNCGO76070 127 aa9.71□□□□□ -0.86
VRK3-201ENST00000316763 ANGP03950 147 aaKnown RBP9.71□□□□□ -0.86
VRK3-201ENST00000316763 CKS1BP61024 79 aa9.71□□□□□ -0.86
VRK3-201ENST00000316763 FAM240AA0A1B0GVK7 77 aa9.7□□□□□ -0.86
VRK3-201ENST00000316763 CXCL5P42830 114 aa9.7□□□□□ -0.86
VRK3-201ENST00000316763 CFAP161Q6P656 301 aa9.7□□□□□ -0.86
VRK3-201ENST00000316763 A0A0J9YWU9 116 aa9.7□□□□□ -0.86
VRK3-201ENST00000316763 BAALC-AS2P0C853 105 aa9.7□□□□□ -0.86
VRK3-201ENST00000316763 H0YGX0 51 aa9.69□□□□□ -0.86
VRK3-201ENST00000316763 REG3AQ06141 175 aa9.69□□□□□ -0.86
VRK3-201ENST00000316763 CHCHD10Q8WYQ3 142 aaPredicted RBP9.69□□□□□ -0.86
VRK3-201ENST00000316763 HUWE1Q7Z6Z7 4374 aaKnown RBP9.69□□□□□ -0.86
VRK3-201ENST00000316763 MALP21145 153 aa9.68□□□□□ -0.86
VRK3-201ENST00000316763 SMIM11BQ8TCY0 68 aa9.68□□□□□ -0.86
VRK3-201ENST00000316763 OR13C6PQ8NH95 151 aa9.68□□□□□ -0.86
VRK3-201ENST00000316763 FAM218AQ96MZ4 157 aa9.68□□□□□ -0.86
VRK3-201ENST00000316763 HTN3P15516 51 aa9.67□□□□□ -0.86
VRK3-201ENST00000316763 COX17Q14061 63 aa9.67□□□□□ -0.86
VRK3-201ENST00000316763 LELP1Q5T871 98 aa9.67□□□□□ -0.86
VRK3-201ENST00000316763 DNAL4O96015 105 aa9.66□□□□□ -0.86
VRK3-201ENST00000316763 ACYP1P07311 99 aa9.66□□□□□ -0.86
VRK3-201ENST00000316763 GAGE2BQ13066 116 aa9.66□□□□□ -0.86
VRK3-201ENST00000316763 GAGE2EQ4V326 116 aa9.66□□□□□ -0.86
VRK3-201ENST00000316763 C15orf53Q8NAA6 179 aa9.66□□□□□ -0.86
VRK3-201ENST00000316763 GAGE2DQ9UEU5 116 aa9.66□□□□□ -0.86
VRK3-201ENST00000316763 KIAA0087Q14695 138 aa9.65□□□□□ -0.86
VRK3-201ENST00000316763 Q6ZTC4 211 aa9.65□□□□□ -0.86
VRK3-201ENST00000316763 IGLV10-54A0A075B6I4 117 aa9.64□□□□□ -0.87
VRK3-201ENST00000316763 C11orf45Q8TAV5 145 aa9.64□□□□□ -0.87
VRK3-201ENST00000316763 H3BNG1 76 aa9.63□□□□□ -0.87
VRK3-201ENST00000316763 INAFM2P0DMQ5 153 aa9.63□□□□□ -0.87
VRK3-201ENST00000316763 NANOS2P60321 138 aaKnown RBP9.63□□□□□ -0.87
VRK3-201ENST00000316763 Q6Q795 121 aa9.63□□□□□ -0.87
VRK3-201ENST00000316763 NDUFC2O95298 119 aa9.62□□□□□ -0.87
VRK3-201ENST00000316763 Q8N3U1 123 aa9.62□□□□□ -0.87
VRK3-201ENST00000316763 Q9HAA7 133 aa9.62□□□□□ -0.87
VRK3-201ENST00000316763 KLK5Q9Y337 293 aaPredicted RBP9.62□□□□□ -0.87
VRK3-201ENST00000316763 TGP01266 2768 aa9.61□□□□□ -0.87
VRK3-201ENST00000316763 A0A087WYN8 130 aa9.6□□□□□ -0.87
VRK3-201ENST00000316763 MUC7Q8TAX7 377 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms