RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 IGKV2D-28P01615 120 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 C2orf48Q96LS8 159 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 A0A096LNJ9 63 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 LOC100131303A0A0U1RQF7 123 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 EGFEM1PQ0D2K5 195 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 KIAA0087Q14695 138 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 SYCNQ0VAF6 134 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 KLKP1Q107X0 134 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 CHCHD10Q8WYQ3 142 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-201ENST00000303395 FASNP49327 2511 aaKnown RBP3.87□□□□□ -1.79
SCN1A-201ENST00000303395 IGLV5-52A0A0A0MRZ9 124 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 IGLV1-40P01703 118 aa3.87□□□□□ -1.79
SCN1A-201ENST00000303395 IGHV6-1A0A0B4J1U7 121 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 NTM-AS1Q6ZSK4 140 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 ZFP36P26651 326 aaKnown RBP3.86□□□□□ -1.79
SCN1A-201ENST00000303395 SPRNQ5BIV9 151 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 IGLV4-69A0A075B6H9 119 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 HCG22E2RYF7 251 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 M0R2N4 97 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 A0A1B0GU69 56 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 LUZP6Q538Z0 58 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 PCSK5Q92824 1860 aa3.86□□□□□ -1.79
SCN1A-201ENST00000303395 MSRB1Q9NZV6 116 aa3.85□□□□□ -1.79
SCN1A-201ENST00000303395 CRIP1P50238 77 aa3.85□□□□□ -1.79
SCN1A-201ENST00000303395 C8orf87E5RJ46 101 aa3.85□□□□□ -1.79
SCN1A-201ENST00000303395 RNASE3P12724 160 aaKnown RBP3.85□□□□□ -1.79
SCN1A-201ENST00000303395 RPL37AP61513 92 aaKnown RBP3.85□□□□□ -1.79
SCN1A-201ENST00000303395 CRIPTQ9P021 101 aa3.85□□□□□ -1.79
SCN1A-201ENST00000303395 CCDC179H3BU77 68 aa3.84□□□□□ -1.79
SCN1A-201ENST00000303395 LINC00208Q96KT6 92 aa3.84□□□□□ -1.79
SCN1A-201ENST00000303395 TRBV6-8A0A0A6YYG3 113 aa3.84□□□□□ -1.79
SCN1A-201ENST00000303395 MAPKAPK5-AS1Q8N8E1 139 aa3.84□□□□□ -1.79
SCN1A-201ENST00000303395 CSNK1G2-AS1Q8NCQ2 148 aa3.84□□□□□ -1.79
SCN1A-201ENST00000303395 TMEM105Q8N8V8 129 aa3.84□□□□□ -1.79
SCN1A-201ENST00000303395 EDN2P20800 178 aa3.84□□□□□ -1.8
SCN1A-201ENST00000303395 RPL39P62891 51 aaKnown RBP3.84□□□□□ -1.8
SCN1A-201ENST00000303395 LINC01554Q52M75 96 aa3.84□□□□□ -1.8
SCN1A-201ENST00000303395 RETNLBQ9BQ08 111 aa3.84□□□□□ -1.8
SCN1A-201ENST00000303395 CDKN2A-AS1Q9UH64 79 aa3.84□□□□□ -1.8
SCN1A-201ENST00000303395 FAM19A4Q96LR4 140 aa3.84□□□□□ -1.8
SCN1A-201ENST00000303395 ZNF702PQ9H963 129 aa3.84□□□□□ -1.8
SCN1A-201ENST00000303395 IGKV2D-30A0A075B6S6 120 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 IGKV2-30P06310 120 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 SPATA3Q8NHX4 192 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 DNAJC9-AS1A6NH13 148 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 PSPHP1O15172 72 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 Q8N814 137 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 H0Y9P7 68 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 H3BNG1 76 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 USP9YO00507 2555 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-201ENST00000303395 LINC01547P58512 204 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-201ENST00000303395 REG3GQ6UW15 175 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 SMIM1B2RUZ4 78 aa3.83□□□□□ -1.8
SCN1A-201ENST00000303395 COX6B2Q6YFQ2 88 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 CDC42SE2Q9NRR3 84 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 ZNF73O43830 326 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-201ENST00000303395 C6orf223Q8N319 242 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 A8MTW9 85 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 SSBP3-AS1Q7Z2R9 100 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 KIF25-AS1Q9Y6Z4 181 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 GVQW2A0A096LPI5 108 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-201ENST00000303395 LELP1Q5T871 98 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 C22orf34Q6ZV56 151 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 LINC00575Q6W349 94 aa3.82□□□□□ -1.8
SCN1A-201ENST00000303395 LY6G6DO95868 133 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 MSMPQ1L6U9 139 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 PRAC2D3DTV9 90 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 MAP6D1Q9H9H5 199 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 FRMD6-AS1P0C7T7 363 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 C11orf71Q6IPW1 123 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 LINC00205P59089 165 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 C6orf99Q4VX62 202 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 LINC00242Q5T6M2 205 aa3.81□□□□□ -1.8
SCN1A-201ENST00000303395 LMO4P61968 165 aa3.8□□□□□ -1.8
SCN1A-201ENST00000303395 FAM229AH3BQW9 127 aa3.8□□□□□ -1.8
SCN1A-201ENST00000303395 KPRPQ5T749 579 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-201ENST00000303395 LINC00694P0DN24 101 aa3.8□□□□□ -1.8
SCN1A-201ENST00000303395 C1orf137Q5JT78 98 aa3.8□□□□□ -1.8
SCN1A-201ENST00000303395 Q8N2B8 174 aa3.8□□□□□ -1.8
SCN1A-201ENST00000303395 ATP11AUNQ6ZP68 121 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 PCOTHQ58A44 107 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 SPANXA2-OT1Q8N9U9 137 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 J3QL48 77 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 ASB16-AS1Q495Z4 193 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 LINC01556Q5JQF7 62 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 PIEZO2Q9H5I5 2752 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 E7EUB6 86 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 CD164Q04900 197 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 TTTY13Q9BZ97 58 aa3.79□□□□□ -1.8
SCN1A-201ENST00000303395 C11orf72Q8NBR9 251 aa3.78□□□□□ -1.8
SCN1A-201ENST00000303395 SOSTDC1Q6X4U4 206 aa3.78□□□□□ -1.8
SCN1A-201ENST00000303395 Q6YL49 198 aa3.78□□□□□ -1.8
SCN1A-201ENST00000303395 C1orf229Q6ZS94 237 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-201ENST00000303395 Q6ZTC4 211 aa3.78□□□□□ -1.8
SCN1A-201ENST00000303395 Q8NA96 180 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 SMIM11BQ8TCY0 68 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 A0A087X002 238 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 LINC00482Q8N8I6 264 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 Q9BRP9 147 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 C6orf48Q9UBA6 75 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms