RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C7orf65Q6ZTY9 151 aa4.66□□□□□ -1.66
VPS35-201ENST00000299138 NOTCH3Q9UM47 2321 aa4.66□□□□□ -1.66
VPS35-201ENST00000299138 GRNP28799 593 aaKnown RBP4.66□□□□□ -1.66
VPS35-201ENST00000299138 DEFB135Q30KP9 77 aa4.66□□□□□ -1.66
VPS35-201ENST00000299138 ADORA2A-AS1P86434 159 aa4.65□□□□□ -1.66
VPS35-201ENST00000299138 C10orf25Q5T742 122 aa4.65□□□□□ -1.66
VPS35-201ENST00000299138 PRR9Q5T870 116 aa4.65□□□□□ -1.66
VPS35-201ENST00000299138 DHRS4-AS1Q9P1J3 65 aa4.65□□□□□ -1.67
VPS35-201ENST00000299138 TRANK1O15050 2925 aa4.65□□□□□ -1.67
VPS35-201ENST00000299138 A0A1B0GW54 56 aa4.65□□□□□ -1.67
VPS35-201ENST00000299138 C1orf64Q8NEQ6 169 aa4.65□□□□□ -1.67
VPS35-201ENST00000299138 SORL1Q92673 2214 aa4.65□□□□□ -1.67
VPS35-201ENST00000299138 Q96MF0 132 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 BPTFQ12830 3046 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 hDV103S1A0JD37 113 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 GAS8-AS1O95177 125 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 MED13Q9UHV7 2174 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 FSHBP01225 129 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 LINC00575Q6W349 94 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 Q6ZSV7 163 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 MUC4Q99102 2169 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 PTPRBP23467 1997 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 NHLRC4P0CG21 123 aaPredicted RBP4.64□□□□□ -1.67
VPS35-201ENST00000299138 CIRBP-AS1Q8TBR5 109 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 NUPR2A6NF83 97 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 WIPF1O43516 503 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 TSPEAR-AS2P59090 65 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 LITAFQ99732 161 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 FRYLO94915 3013 aa4.64□□□□□ -1.67
VPS35-201ENST00000299138 A0A087WYN8 130 aa4.63□□□□□ -1.67
VPS35-201ENST00000299138 LINC01554Q52M75 96 aa4.63□□□□□ -1.67
VPS35-201ENST00000299138 TRBV6-4A0A1B0GX49 114 aa4.63□□□□□ -1.67
VPS35-201ENST00000299138 TNP2Q05952 138 aa4.63□□□□□ -1.67
VPS35-201ENST00000299138 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.63□□□□□ -1.67
VPS35-201ENST00000299138 COX17Q14061 63 aa4.63□□□□□ -1.67
VPS35-201ENST00000299138 VPS13AQ96RL7 3174 aa4.63□□□□□ -1.67
VPS35-201ENST00000299138 C1orf137Q5JT78 98 aa4.63□□□□□ -1.67
VPS35-201ENST00000299138 ZFP36P26651 326 aaKnown RBP4.62□□□□□ -1.67
VPS35-201ENST00000299138 C14orf177Q52M58 125 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 PRO0255Q9UI72 69 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 CREBBPQ92793 2442 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 F8WDY8 70 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 M0R378 163 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 ZNF575Q86XF7 245 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 ACYP2P14621 99 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 TET2Q6N021 2002 aaPredicted RBP4.62□□□□□ -1.67
VPS35-201ENST00000299138 IGKV2D-30A0A075B6S6 120 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 IGKV2-30P06310 120 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 C9orf66Q5T8R8 295 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.62□□□□□ -1.67
VPS35-201ENST00000299138 BDP1A6H8Y1 2624 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 UNQ9165/PRO28630Q6UXU0 137 aa4.62□□□□□ -1.67
VPS35-201ENST00000299138 DSCAMO60469 2012 aa4.61□□□□□ -1.67
VPS35-201ENST00000299138 SMIM29Q86T20 159 aa4.61□□□□□ -1.67
VPS35-201ENST00000299138 Q8N814 137 aa4.61□□□□□ -1.67
VPS35-201ENST00000299138 PROK1P58294 105 aa4.61□□□□□ -1.67
VPS35-201ENST00000299138 Q6ZTI0 123 aa4.61□□□□□ -1.67
VPS35-201ENST00000299138 PCSK5Q92824 1860 aa4.61□□□□□ -1.67
VPS35-201ENST00000299138 CHCHD7Q9BUK0 85 aa4.61□□□□□ -1.67
VPS35-201ENST00000299138 DCHS1Q96JQ0 3298 aa4.6□□□□□ -1.67
VPS35-201ENST00000299138 C7orf33Q8WU49 177 aa4.6□□□□□ -1.67
VPS35-201ENST00000299138 LINC00846Q9NV44 126 aa4.6□□□□□ -1.67
VPS35-201ENST00000299138 CYSRT1A8MQ03 144 aa4.6□□□□□ -1.67
VPS35-201ENST00000299138 SYCNQ0VAF6 134 aa4.6□□□□□ -1.67
VPS35-201ENST00000299138 SMIM1B2RUZ4 78 aa4.6□□□□□ -1.67
VPS35-201ENST00000299138 LINC00242Q5T6M2 205 aa4.59□□□□□ -1.67
VPS35-201ENST00000299138 C19orf84I3L1E1 186 aa4.59□□□□□ -1.67
VPS35-201ENST00000299138 PRR3P79522 188 aaKnown RBP4.59□□□□□ -1.67
VPS35-201ENST00000299138 CRIPTQ9P021 101 aa4.59□□□□□ -1.67
VPS35-201ENST00000299138 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.59□□□□□ -1.672e-8■■■■□ 26
VPS35-201ENST00000299138 ASPMQ8IZT6 3477 aa4.59□□□□□ -1.67
VPS35-201ENST00000299138 ROS1P08922 2347 aa4.59□□□□□ -1.68
VPS35-201ENST00000299138 A8MUN3 132 aa4.59□□□□□ -1.68
VPS35-201ENST00000299138 LCA10Q71F78 164 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 ERC2-IT1O76042 136 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 C4orf3Q8WVX3 66 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 Q6ZTC4 211 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 Q8IZM0 81 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 FHL3Q13643 280 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 C6orf48Q9UBA6 75 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 WDR87Q6ZQQ6 2873 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 A0A087WSZ3 146 aa4.58□□□□□ -1.68
VPS35-201ENST00000299138 EIF4EBP3O60516 100 aaPredicted RBP4.58□□□□□ -1.68
VPS35-201ENST00000299138 COL27A1Q8IZC6 1860 aaPredicted RBP4.58□□□□□ -1.68
VPS35-201ENST00000299138 KTN1-AS1Q86SY8 53 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 CDC42SE2Q9NRR3 84 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 OBSCN-AS1Q96MR7 158 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 LINC00474Q9P2X8 69 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 TRBV6-8A0A0A6YYG3 113 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 C11orf45Q8TAV5 145 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 ZFHX3Q15911 3703 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 APLNQ9ULZ1 77 aa4.57□□□□□ -1.68
VPS35-201ENST00000299138 WNK1Q9H4A3 2382 aa4.56□□□□□ -1.68
VPS35-201ENST00000299138 LY6G6DO95868 133 aa4.56□□□□□ -1.68
VPS35-201ENST00000299138 ZNF702PQ9H963 129 aa4.56□□□□□ -1.68
VPS35-201ENST00000299138 PLXNB1O43157 2135 aa4.56□□□□□ -1.68
VPS35-201ENST00000299138 A0A1B0GUV1 79 aa4.56□□□□□ -1.68
VPS35-201ENST00000299138 DEFB114Q30KQ6 69 aa4.56□□□□□ -1.68
VPS35-201ENST00000299138 MED13LQ71F56 2210 aa4.56□□□□□ -1.68
VPS35-201ENST00000299138 ATRXP46100 2492 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms