RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 IGKV2-28A0A075B6P5 120 aa12.67□□□□□ -0.38
SHKBP1-201ENST00000291842 TRAV26-1A0A087WT03 109 aa12.67□□□□□ -0.38
SHKBP1-201ENST00000291842 H3BT86 120 aa12.67□□□□□ -0.38
SHKBP1-201ENST00000291842 IGKV2D-28P01615 120 aa12.67□□□□□ -0.38
SHKBP1-201ENST00000291842 HTN3P15516 51 aa12.67□□□□□ -0.38
SHKBP1-201ENST00000291842 LINC00269Q8N2A0 174 aa12.67□□□□□ -0.38
SHKBP1-201ENST00000291842 IGLV10-54A0A075B6I4 117 aa12.66□□□□□ -0.38
SHKBP1-201ENST00000291842 CCL18P55774 89 aa12.66□□□□□ -0.38
SHKBP1-201ENST00000291842 CRPP02741 224 aa12.65□□□□□ -0.38
SHKBP1-201ENST00000291842 FAM218AQ96MZ4 157 aa12.65□□□□□ -0.38
SHKBP1-201ENST00000291842 Q8NAQ8 132 aa12.65□□□□□ -0.38
SHKBP1-201ENST00000291842 IBA57-AS1B1ANH7 110 aa12.64□□□□□ -0.39
SHKBP1-201ENST00000291842 ANGP03950 147 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-201ENST00000291842 TRAV13-2A0A0B4J235 113 aa12.63□□□□□ -0.39
SHKBP1-201ENST00000291842 TRAV8-4A0A0B4J246 113 aa12.63□□□□□ -0.39
SHKBP1-201ENST00000291842 IGHV4-30-4P0DP06 118 aa12.63□□□□□ -0.39
SHKBP1-201ENST00000291842 ATP5G1P05496 136 aa12.62□□□□□ -0.39
SHKBP1-201ENST00000291842 PPDPFQ9H3Y8 114 aa12.61□□□□□ -0.39
SHKBP1-201ENST00000291842 MIFP14174 115 aa12.6□□□□□ -0.39
SHKBP1-201ENST00000291842 Q9HAA7 133 aa12.6□□□□□ -0.39
SHKBP1-201ENST00000291842 REG3AQ06141 175 aa12.59□□□□□ -0.39
SHKBP1-201ENST00000291842 SMIM11BQ8TCY0 68 aa12.59□□□□□ -0.39
SHKBP1-201ENST00000291842 CHCHD10Q8WYQ3 142 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-201ENST00000291842 RPL28P46779 137 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-201ENST00000291842 Q8IZM0 81 aa12.59□□□□□ -0.39
SHKBP1-201ENST00000291842 SPART-AS1P0CW21 52 aa12.58□□□□□ -0.4
SHKBP1-201ENST00000291842 CKS1BP61024 79 aa12.58□□□□□ -0.4
SHKBP1-201ENST00000291842 WFDC9Q8NEX5 89 aa12.58□□□□□ -0.4
SHKBP1-201ENST00000291842 OR13C6PQ8NH95 151 aa12.58□□□□□ -0.4
SHKBP1-201ENST00000291842 BAALC-AS2P0C853 105 aa12.57□□□□□ -0.4
SHKBP1-201ENST00000291842 CD164L2Q6UWJ8 174 aa12.57□□□□□ -0.4
SHKBP1-201ENST00000291842 TRACP01848 142 aa12.56□□□□□ -0.4
SHKBP1-201ENST00000291842 OXLD1Q5BKU9 147 aa12.56□□□□□ -0.4
SHKBP1-201ENST00000291842 MALP21145 153 aa12.55□□□□□ -0.4
SHKBP1-201ENST00000291842 C9orf116Q5BN46 136 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-201ENST00000291842 PRR3P79522 188 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-201ENST00000291842 KIAA0087Q14695 138 aa12.55□□□□□ -0.4
SHKBP1-201ENST00000291842 F8P00451 2351 aa12.54□□□□□ -0.4
SHKBP1-201ENST00000291842 A0A087WYN8 130 aa12.54□□□□□ -0.4
SHKBP1-201ENST00000291842 MRPL23Q16540 153 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-201ENST00000291842 RETNQ9HD89 108 aa12.54□□□□□ -0.4
SHKBP1-201ENST00000291842 SNCGO76070 127 aa12.53□□□□□ -0.4
SHKBP1-201ENST00000291842 DEFB121Q5J5C9 76 aa12.53□□□□□ -0.4
SHKBP1-201ENST00000291842 C15orf53Q8NAA6 179 aa12.52□□□□□ -0.4
SHKBP1-201ENST00000291842 C22orf24Q9Y442 160 aa12.52□□□□□ -0.4
SHKBP1-201ENST00000291842 TTC32Q5I0X7 151 aa12.51□□□□□ -0.41
SHKBP1-201ENST00000291842 LINC00526Q96FQ7 95 aa12.51□□□□□ -0.41
SHKBP1-201ENST00000291842 KLK12Q9UKR0 248 aa12.51□□□□□ -0.41
SHKBP1-201ENST00000291842 A0A1B0GV72 72 aa12.5□□□□□ -0.41
SHKBP1-201ENST00000291842 LELP1Q5T871 98 aa12.5□□□□□ -0.41
SHKBP1-201ENST00000291842 LINC01561Q8N1V8 128 aa12.5□□□□□ -0.41
SHKBP1-201ENST00000291842 C6orf223Q8N319 242 aa12.5□□□□□ -0.41
SHKBP1-201ENST00000291842 PKD1L1Q8TDX9 2849 aa12.5□□□□□ -0.41
SHKBP1-201ENST00000291842 WIPF1O43516 503 aa12.49□□□□□ -0.41
SHKBP1-201ENST00000291842 KRTAP10-11P60412 298 aa12.49□□□□□ -0.41
SHKBP1-201ENST00000291842 FLNBO75369 2602 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-201ENST00000291842 DNAL4O96015 105 aa12.48□□□□□ -0.41
SHKBP1-201ENST00000291842 LECT2O14960 151 aa12.47□□□□□ -0.41
SHKBP1-201ENST00000291842 GAGE2BQ13066 116 aa12.47□□□□□ -0.41
SHKBP1-201ENST00000291842 GAGE2EQ4V326 116 aa12.47□□□□□ -0.41
SHKBP1-201ENST00000291842 C10orf25Q5T742 122 aa12.47□□□□□ -0.41
SHKBP1-201ENST00000291842 GAGE2DQ9UEU5 116 aa12.47□□□□□ -0.41
SHKBP1-201ENST00000291842 FBN1P35555 2871 aaKnown RBP12.46□□□□□ -0.42
SHKBP1-201ENST00000291842 SLPIP03973 132 aa12.45□□□□□ -0.42
SHKBP1-201ENST00000291842 UNQ6190/PRO20217Q6UXQ8 127 aa12.45□□□□□ -0.42
SHKBP1-201ENST00000291842 STAB1Q9NY15 2570 aa12.45□□□□□ -0.42
SHKBP1-201ENST00000291842 LYPD5Q6UWN5 251 aa12.45□□□□□ -0.42
SHKBP1-201ENST00000291842 FAM240AA0A1B0GVK7 77 aa12.44□□□□□ -0.42
SHKBP1-201ENST00000291842 H0YGX0 51 aa12.44□□□□□ -0.42
SHKBP1-201ENST00000291842 CXCL5P42830 114 aa12.44□□□□□ -0.42
SHKBP1-201ENST00000291842 C9orf129Q5T035 196 aaKnown RBP12.44□□□□□ -0.42
SHKBP1-201ENST00000291842 SPAG11BQ08648 103 aa12.44□□□□□ -0.42
SHKBP1-201ENST00000291842 ENHOQ6UWT2 76 aa12.44□□□□□ -0.42
SHKBP1-201ENST00000291842 Q8NDZ9 215 aa12.44□□□□□ -0.42
SHKBP1-201ENST00000291842 COX17Q14061 63 aa12.43□□□□□ -0.42
SHKBP1-201ENST00000291842 NANOS2P60321 138 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-201ENST00000291842 ANK2Q01484 3957 aa12.42□□□□□ -0.42
SHKBP1-201ENST00000291842 NCR3O14931 201 aa12.42□□□□□ -0.42
SHKBP1-201ENST00000291842 PRR34Q9NV39 138 aa12.42□□□□□ -0.42
SHKBP1-201ENST00000291842 CYSRT1A8MQ03 144 aa12.41□□□□□ -0.42
SHKBP1-201ENST00000291842 KRTAP24-1Q3LI83 254 aa12.41□□□□□ -0.42
SHKBP1-201ENST00000291842 KLK5Q9Y337 293 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-201ENST00000291842 TENM3Q9P273 2699 aa12.41□□□□□ -0.42
SHKBP1-201ENST00000291842 Q6ZTC4 211 aa12.4□□□□□ -0.42
SHKBP1-201ENST00000291842 WFDC10BQ8IUB3 73 aa12.4□□□□□ -0.42
SHKBP1-201ENST00000291842 ANAPC13Q9BS18 74 aa12.4□□□□□ -0.42
SHKBP1-201ENST00000291842 KPRPQ5T749 579 aaPredicted RBP12.4□□□□□ -0.43
SHKBP1-201ENST00000291842 GAGE2AQ6NT46 116 aa12.39□□□□□ -0.43
SHKBP1-201ENST00000291842 SMCR5Q8TEV8 140 aa12.39□□□□□ -0.43
SHKBP1-201ENST00000291842 C14orf132Q9NPU4 83 aa12.37□□□□□ -0.43
SHKBP1-201ENST00000291842 NDUFC2O95298 119 aa12.37□□□□□ -0.43
SHKBP1-201ENST00000291842 ACYP1P07311 99 aa12.36□□□□□ -0.43
SHKBP1-201ENST00000291842 TMEM126AQ9H061 195 aa12.36□□□□□ -0.43
SHKBP1-201ENST00000291842 INAFM2P0DMQ5 153 aa12.35□□□□□ -0.43
SHKBP1-201ENST00000291842 NDUFV3P56181 108 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-201ENST00000291842 C3orf56Q8N813 242 aa12.35□□□□□ -0.43
SHKBP1-201ENST00000291842 MAST4O15021 2626 aa12.35□□□□□ -0.43
SHKBP1-201ENST00000291842 NHLRC4P0CG21 123 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-201ENST00000291842 S100A7L2Q5SY68 101 aa12.34□□□□□ -0.43
SHKBP1-201ENST00000291842 Q6Q795 121 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms