RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CRPP02741 224 aa11.58□□□□□ -0.56
VPS54-201ENST00000272322 C15orf53Q8NAA6 179 aa11.58□□□□□ -0.56
VPS54-201ENST00000272322 SLPIP03973 132 aa11.58□□□□□ -0.56
VPS54-201ENST00000272322 CELA1Q9UNI1 258 aa11.57□□□□□ -0.56
VPS54-201ENST00000272322 CCL18P55774 89 aa11.56□□□□□ -0.56
VPS54-201ENST00000272322 TIMM17BO60830 172 aa11.56□□□□□ -0.56
VPS54-201ENST00000272322 BAALC-AS2P0C853 105 aa11.55□□□□□ -0.56
VPS54-201ENST00000272322 DAD1P61803 113 aa11.55□□□□□ -0.56
VPS54-201ENST00000272322 IGHV4-28A0A0C4DH34 117 aa11.54□□□□□ -0.56
VPS54-201ENST00000272322 PRO0255Q9UI72 69 aa11.54□□□□□ -0.56
VPS54-201ENST00000272322 IGKV2-28A0A075B6P5 120 aa11.54□□□□□ -0.56
VPS54-201ENST00000272322 COX7A2LO14548 114 aa11.54□□□□□ -0.56
VPS54-201ENST00000272322 IGKV2D-28P01615 120 aa11.54□□□□□ -0.56
VPS54-201ENST00000272322 RNF183Q96D59 192 aa11.54□□□□□ -0.56
VPS54-201ENST00000272322 FAM110AQ9BQ89 295 aa11.54□□□□□ -0.56
VPS54-201ENST00000272322 GAGE2BQ13066 116 aa11.53□□□□□ -0.56
VPS54-201ENST00000272322 GAGE2EQ4V326 116 aa11.53□□□□□ -0.56
VPS54-201ENST00000272322 GAGE2DQ9UEU5 116 aa11.53□□□□□ -0.56
VPS54-201ENST00000272322 MGAM2Q2M2H8 2515 aa11.53□□□□□ -0.56
VPS54-201ENST00000272322 HERV-K104P63124 156 aa11.52□□□□□ -0.57
VPS54-201ENST00000272322 SS18Q15532 418 aa11.52□□□□□ -0.57
VPS54-201ENST00000272322 SMIM11BQ8TCY0 68 aa11.52□□□□□ -0.57
VPS54-201ENST00000272322 A0A087WYN8 130 aa11.52□□□□□ -0.57
VPS54-201ENST00000272322 MALP21145 153 aa11.52□□□□□ -0.57
VPS54-201ENST00000272322 OXLD1Q5BKU9 147 aa11.52□□□□□ -0.57
VPS54-201ENST00000272322 ANAPC13Q9BS18 74 aa11.52□□□□□ -0.57
VPS54-201ENST00000272322 RETNQ9HD89 108 aa11.51□□□□□ -0.57
VPS54-201ENST00000272322 A0A087WZ39 114 aa11.5□□□□□ -0.57
VPS54-201ENST00000272322 C6orf223Q8N319 242 aa11.5□□□□□ -0.57
VPS54-201ENST00000272322 LECT2O14960 151 aa11.49□□□□□ -0.57
VPS54-201ENST00000272322 C9orf129Q5T035 196 aaKnown RBP11.49□□□□□ -0.57
VPS54-201ENST00000272322 DNAL4O96015 105 aa11.49□□□□□ -0.57
VPS54-201ENST00000272322 C3orf56Q8N813 242 aa11.49□□□□□ -0.57
VPS54-201ENST00000272322 KLK12Q9UKR0 248 aa11.49□□□□□ -0.57
VPS54-201ENST00000272322 H3BT86 120 aa11.48□□□□□ -0.57
VPS54-201ENST00000272322 GAGE2AQ6NT46 116 aa11.48□□□□□ -0.57
VPS54-201ENST00000272322 SHISA2Q6UWI4 295 aa11.48□□□□□ -0.57
VPS54-201ENST00000272322 CHCHD10Q8WYQ3 142 aaPredicted RBP11.48□□□□□ -0.57
VPS54-201ENST00000272322 BAHCC1Q9P281 2608 aa11.47□□□□□ -0.57
VPS54-201ENST00000272322 REG3AQ06141 175 aa11.47□□□□□ -0.57
VPS54-201ENST00000272322 C9orf66Q5T8R8 295 aa11.47□□□□□ -0.57
VPS54-201ENST00000272322 SCGB1A1P11684 91 aa11.46□□□□□ -0.57
VPS54-201ENST00000272322 KIR2DL5BQ8NHK3 375 aa11.46□□□□□ -0.57
VPS54-201ENST00000272322 TRAV13-2A0A0B4J235 113 aa11.46□□□□□ -0.58
VPS54-201ENST00000272322 COPS9Q8WXC6 57 aa11.45□□□□□ -0.58
VPS54-201ENST00000272322 CFAP161Q6P656 301 aa11.45□□□□□ -0.58
VPS54-201ENST00000272322 NCR3O14931 201 aa11.45□□□□□ -0.58
VPS54-201ENST00000272322 C14orf132Q9NPU4 83 aa11.45□□□□□ -0.58
VPS54-201ENST00000272322 IGHV4-30-4P0DP06 118 aa11.44□□□□□ -0.58
VPS54-201ENST00000272322 FAM19A3Q7Z5A8 133 aa11.44□□□□□ -0.58
VPS54-201ENST00000272322 C10orf25Q5T742 122 aa11.43□□□□□ -0.58
VPS54-201ENST00000272322 UNQ6190/PRO20217Q6UXQ8 127 aa11.42□□□□□ -0.58
VPS54-201ENST00000272322 PRB2P02812 416 aaPredicted RBP11.41□□□□□ -0.58
VPS54-201ENST00000272322 IBA57-AS1B1ANH7 110 aa11.41□□□□□ -0.58
VPS54-201ENST00000272322 B5MCH6 92 aa11.41□□□□□ -0.58
VPS54-201ENST00000272322 APOC4P55056 127 aa11.4□□□□□ -0.58
VPS54-201ENST00000272322 XAGE1AQ9HD64 81 aa11.4□□□□□ -0.58
VPS54-201ENST00000272322 CITED1Q99966 193 aa11.4□□□□□ -0.59
VPS54-201ENST00000272322 SMCR5Q8TEV8 140 aa11.39□□□□□ -0.59
VPS54-201ENST00000272322 ANK2Q01484 3957 aa11.38□□□□□ -0.59
VPS54-201ENST00000272322 RPL28P46779 137 aaKnown RBP11.38□□□□□ -0.59
VPS54-201ENST00000272322 NDUFV3P56181 108 aaKnown RBP11.38□□□□□ -0.59
VPS54-201ENST00000272322 HIGD2BQ4VC39 106 aa11.38□□□□□ -0.59
VPS54-201ENST00000272322 SPART-AS1P0CW21 52 aa11.37□□□□□ -0.59
VPS54-201ENST00000272322 Q8NAQ8 132 aa11.37□□□□□ -0.59
VPS54-201ENST00000272322 Q8NDZ9 215 aa11.37□□□□□ -0.59
VPS54-201ENST00000272322 C22orf24Q9Y442 160 aa11.37□□□□□ -0.59
VPS54-201ENST00000272322 CCDC179H3BU77 68 aa11.37□□□□□ -0.59
VPS54-201ENST00000272322 LYRM9A8MSI8 78 aa11.36□□□□□ -0.59
VPS54-201ENST00000272322 SS18L2Q9UHA2 77 aa11.36□□□□□ -0.59
VPS54-201ENST00000272322 A0A1B0GUV1 79 aa11.35□□□□□ -0.59
VPS54-201ENST00000272322 SMIM9A6NGZ8 99 aa11.35□□□□□ -0.59
VPS54-201ENST00000272322 TRACP01848 142 aa11.35□□□□□ -0.59
VPS54-201ENST00000272322 NHLRC4P0CG21 123 aaPredicted RBP11.35□□□□□ -0.59
VPS54-201ENST00000272322 CD164L2Q6UWJ8 174 aa11.35□□□□□ -0.59
VPS54-201ENST00000272322 LINC00612Q8N6U2 182 aa11.35□□□□□ -0.59
VPS54-201ENST00000272322 M0QXV9 152 aa11.35□□□□□ -0.59
VPS54-201ENST00000272322 SPAG11BQ08648 103 aa11.35□□□□□ -0.59
VPS54-201ENST00000272322 S100A7L2Q5SY68 101 aa11.34□□□□□ -0.59
VPS54-201ENST00000272322 IGKV3D-7A0A0C4DH55 119 aa11.34□□□□□ -0.59
VPS54-201ENST00000272322 MRPL23Q16540 153 aaKnown RBP11.34□□□□□ -0.59
VPS54-201ENST00000272322 RPL18AQ02543 176 aaKnown RBP11.34□□□□□ -0.59
VPS54-201ENST00000272322 Q8IZM0 81 aa11.33□□□□□ -0.6
VPS54-201ENST00000272322 KIAA0087Q14695 138 aa11.33□□□□□ -0.6
VPS54-201ENST00000272322 C6orf99Q4VX62 202 aa11.33□□□□□ -0.6
VPS54-201ENST00000272322 WFDC10BQ8IUB3 73 aa11.33□□□□□ -0.6
VPS54-201ENST00000272322 FAM236AA0A1B0GUQ0 79 aa11.32□□□□□ -0.6
VPS54-201ENST00000272322 FAM236BA0A1B0GV22 79 aa11.32□□□□□ -0.6
VPS54-201ENST00000272322 CYSRT1A8MQ03 144 aa11.32□□□□□ -0.6
VPS54-201ENST00000272322 Q6ZTC4 211 aa11.31□□□□□ -0.6
VPS54-201ENST00000272322 SDIM1Q6ZPB5 146 aa11.31□□□□□ -0.6
VPS54-201ENST00000272322 CSMD3Q7Z407 3707 aa11.29□□□□□ -0.6
VPS54-201ENST00000272322 MIFP14174 115 aa11.28□□□□□ -0.6
VPS54-201ENST00000272322 MRAPQ8TCY5 172 aa11.28□□□□□ -0.6
VPS54-201ENST00000272322 ENHOQ6UWT2 76 aa11.27□□□□□ -0.61
VPS54-201ENST00000272322 NANOS2P60321 138 aaKnown RBP11.27□□□□□ -0.61
VPS54-201ENST00000272322 KRTAP10-11P60412 298 aa11.27□□□□□ -0.61
VPS54-201ENST00000272322 TENM2Q9NT68 2774 aa11.27□□□□□ -0.61
VPS54-201ENST00000272322 STAB2Q8WWQ8 2551 aa11.27□□□□□ -0.61
VPS54-201ENST00000272322 CXCL5P42830 114 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms