RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 NPC2P61916 151 aa13.44□□□□□ -0.26
COL4A3BP-201ENST00000261415 C9orf85Q96MD7 179 aa13.43□□□□□ -0.26
COL4A3BP-201ENST00000261415 OPRPNQ99935 248 aaPredicted RBP13.43□□□□□ -0.26
COL4A3BP-201ENST00000261415 NBEAL2Q6ZNJ1 2754 aa13.43□□□□□ -0.26
COL4A3BP-201ENST00000261415 DNHD1Q96M86 4753 aa13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 C1orf43Q9BWL3 253 aa13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 A8MZ25 164 aa13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 USP17L23D6RBM5 183 aa13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 F5H697 171 aa13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 MRPS36P82909 103 aaKnown RBP13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 ZNF415Q09FC8 603 aa13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 C20orf203Q8NBC4 194 aa13.42□□□□□ -0.26
COL4A3BP-201ENST00000261415 KPRPQ5T749 579 aaPredicted RBP13.41□□□□□ -0.26
COL4A3BP-201ENST00000261415 IGLV4-3A0A075B6K6 122 aa13.41□□□□□ -0.26
COL4A3BP-201ENST00000261415 C11orf72Q8NBR9 251 aa13.41□□□□□ -0.26
COL4A3BP-201ENST00000261415 DEFB104AQ8WTQ1 72 aa13.41□□□□□ -0.26
COL4A3BP-201ENST00000261415 COPS9Q8WXC6 57 aa13.41□□□□□ -0.26
COL4A3BP-201ENST00000261415 NACAE9PAV3 2078 aa13.4□□□□□ -0.26
COL4A3BP-201ENST00000261415 DNAL4O96015 105 aa13.39□□□□□ -0.27
COL4A3BP-201ENST00000261415 DEFB135Q30KP9 77 aa13.39□□□□□ -0.27
COL4A3BP-201ENST00000261415 VSIG2Q96IQ7 327 aa13.39□□□□□ -0.27
COL4A3BP-201ENST00000261415 CIRBPQ14011 172 aaKnown RBP13.39□□□□□ -0.27
COL4A3BP-201ENST00000261415 PRB2P02812 416 aaPredicted RBP13.38□□□□□ -0.27
COL4A3BP-201ENST00000261415 LINC00336Q6ZUF6 198 aa13.38□□□□□ -0.27
COL4A3BP-201ENST00000261415 EPM2AB3EWF7 344 aa13.38□□□□□ -0.27
COL4A3BP-201ENST00000261415 C22orf24Q9Y442 160 aa13.37□□□□□ -0.27
COL4A3BP-201ENST00000261415 SERP1Q9Y6X1 66 aa13.37□□□□□ -0.27
COL4A3BP-201ENST00000261415 C16orf74Q96GX8 76 aa13.36□□□□□ -0.27
COL4A3BP-201ENST00000261415 FHL2Q14192 279 aa13.36□□□□□ -0.27
COL4A3BP-201ENST00000261415 LINC01561Q8N1V8 128 aa13.36□□□□□ -0.27
COL4A3BP-201ENST00000261415 IL17DQ8TAD2 202 aa13.36□□□□□ -0.27
COL4A3BP-201ENST00000261415 X6R8D5 127 aa13.36□□□□□ -0.27
COL4A3BP-201ENST00000261415 IGKV3D-7A0A0C4DH55 119 aa13.34□□□□□ -0.27
COL4A3BP-201ENST00000261415 FAM236DA0A1B0GTK5 79 aa13.34□□□□□ -0.27
COL4A3BP-201ENST00000261415 PLAC8L1A1L4L8 177 aa13.34□□□□□ -0.27
COL4A3BP-201ENST00000261415 K7EIL1 84 aa13.34□□□□□ -0.27
COL4A3BP-201ENST00000261415 FAM236CP0DP71 79 aa13.34□□□□□ -0.27
COL4A3BP-201ENST00000261415 A0A087WWL8 130 aa13.33□□□□□ -0.28
COL4A3BP-201ENST00000261415 OVOL2Q9BRP0 275 aa13.33□□□□□ -0.28
COL4A3BP-201ENST00000261415 TMEM243Q9BU79 118 aa13.33□□□□□ -0.28
COL4A3BP-201ENST00000261415 LINC00308Q8TCZ7 52 aa13.32□□□□□ -0.28
COL4A3BP-201ENST00000261415 M0QY20 66 aa13.32□□□□□ -0.28
COL4A3BP-201ENST00000261415 SEC61GP60059 68 aa13.31□□□□□ -0.28
COL4A3BP-201ENST00000261415 UBE2D4Q9Y2X8 147 aa13.31□□□□□ -0.28
COL4A3BP-201ENST00000261415 A0A087WVE0 104 aa13.3□□□□□ -0.28
COL4A3BP-201ENST00000261415 NDUFA1O15239 70 aa13.3□□□□□ -0.28
COL4A3BP-201ENST00000261415 PIK3CD-AS1Q5SR53 167 aa13.3□□□□□ -0.28
COL4A3BP-201ENST00000261415 NOP10Q9NPE3 64 aaKnown RBP13.3□□□□□ -0.28
COL4A3BP-201ENST00000261415 V9GYY9 64 aa13.29□□□□□ -0.28
COL4A3BP-201ENST00000261415 RS1O15537 224 aa13.28□□□□□ -0.28
COL4A3BP-201ENST00000261415 LINC00846Q9NV44 126 aa13.28□□□□□ -0.28
COL4A3BP-201ENST00000261415 TRGV1A0A0A0MS02 117 aa13.28□□□□□ -0.28
COL4A3BP-201ENST00000261415 Q6ZTI0 123 aa13.28□□□□□ -0.28
COL4A3BP-201ENST00000261415 PKIGQ9Y2B9 76 aa13.28□□□□□ -0.28
COL4A3BP-201ENST00000261415 FAM74A4Q5TZK3 123 aa13.27□□□□□ -0.28
COL4A3BP-201ENST00000261415 MIFP14174 115 aa13.27□□□□□ -0.29
COL4A3BP-201ENST00000261415 S100A7L2Q5SY68 101 aa13.27□□□□□ -0.29
COL4A3BP-201ENST00000261415 RETNQ9HD89 108 aa13.27□□□□□ -0.29
COL4A3BP-201ENST00000261415 SMIM26A0A096LP01 95 aa13.26□□□□□ -0.29
COL4A3BP-201ENST00000261415 Q8NAQ8 132 aa13.26□□□□□ -0.29
COL4A3BP-201ENST00000261415 IGHV4-28A0A0C4DH34 117 aa13.25□□□□□ -0.29
COL4A3BP-201ENST00000261415 GHRHP01286 108 aa13.25□□□□□ -0.29
COL4A3BP-201ENST00000261415 OBSCN-AS1Q96MR7 158 aa13.25□□□□□ -0.29
COL4A3BP-201ENST00000261415 FAM218AQ96MZ4 157 aa13.25□□□□□ -0.29
COL4A3BP-201ENST00000261415 ATP5EP2Q5VTU8 51 aa13.25□□□□□ -0.29
COL4A3BP-201ENST00000261415 TENM3Q9P273 2699 aa13.24□□□□□ -0.29
COL4A3BP-201ENST00000261415 DEFB4AO15263 64 aa13.24□□□□□ -0.29
COL4A3BP-201ENST00000261415 FAM104AQ969W3 186 aa13.23□□□□□ -0.29
COL4A3BP-201ENST00000261415 C14orf132Q9NPU4 83 aa13.23□□□□□ -0.29
COL4A3BP-201ENST00000261415 RPL28P46779 137 aaKnown RBP13.22□□□□□ -0.29
COL4A3BP-201ENST00000261415 XCL1P47992 114 aa13.22□□□□□ -0.29
COL4A3BP-201ENST00000261415 Q9HAA7 133 aa13.22□□□□□ -0.29
COL4A3BP-201ENST00000261415 IGHV3-73A0A0B4J1V6 119 aa13.21□□□□□ -0.29
COL4A3BP-201ENST00000261415 BCE1O60756 84 aa13.2□□□□□ -0.3
COL4A3BP-201ENST00000261415 C20orf197Q8N268 126 aa13.2□□□□□ -0.3
COL4A3BP-201ENST00000261415 TRGV2A0A075B6R0 118 aa13.2□□□□□ -0.3
COL4A3BP-201ENST00000261415 TRAV13-2A0A0B4J235 113 aa13.2□□□□□ -0.3
COL4A3BP-201ENST00000261415 LINC00612Q8N6U2 182 aa13.2□□□□□ -0.3
COL4A3BP-201ENST00000261415 C1orf195Q5TG92 126 aa13.19□□□□□ -0.3
COL4A3BP-201ENST00000261415 LYRM9A8MSI8 78 aa13.19□□□□□ -0.3
COL4A3BP-201ENST00000261415 TM2D3Q9BRN9 247 aa13.19□□□□□ -0.3
COL4A3BP-201ENST00000261415 DEFB130BP0DP73 79 aa13.18□□□□□ -0.3
COL4A3BP-201ENST00000261415 DEFB130AP0DP74 79 aa13.18□□□□□ -0.3
COL4A3BP-201ENST00000261415 IGHV3-53P01767 116 aa13.18□□□□□ -0.3
COL4A3BP-201ENST00000261415 IGLV5-45A0A087WSX0 123 aa13.17□□□□□ -0.3
COL4A3BP-201ENST00000261415 TRBV10-3A0A0K0K1G6 114 aa13.17□□□□□ -0.3
COL4A3BP-201ENST00000261415 H7BZZ5 65 aa13.17□□□□□ -0.3
COL4A3BP-201ENST00000261415 Q9H8V8 135 aa13.17□□□□□ -0.3
COL4A3BP-201ENST00000261415 CELA1Q9UNI1 258 aa13.17□□□□□ -0.3
COL4A3BP-201ENST00000261415 HUWE1Q7Z6Z7 4374 aaKnown RBP13.16□□□□□ -0.3
COL4A3BP-201ENST00000261415 H0YGX0 51 aa13.15□□□□□ -0.3
COL4A3BP-201ENST00000261415 SOSTDC1Q6X4U4 206 aa13.15□□□□□ -0.3
COL4A3BP-201ENST00000261415 Q6ZSN1 163 aa13.15□□□□□ -0.3
COL4A3BP-201ENST00000261415 CDKN2A-AS1Q9UH64 79 aa13.15□□□□□ -0.3
COL4A3BP-201ENST00000261415 C11orf68Q9H3H3 251 aaKnown RBP13.14□□□□□ -0.31
COL4A3BP-201ENST00000261415 COL7A1Q02388 2944 aa13.14□□□□□ -0.31
COL4A3BP-201ENST00000261415 SPART-AS1P0CW21 52 aa13.14□□□□□ -0.31
COL4A3BP-201ENST00000261415 TRAV23DV6A0A075B6W5 121 aa13.13□□□□□ -0.31
COL4A3BP-201ENST00000261415 IGLV5-39A0A0G2JS06 123 aa13.13□□□□□ -0.31
COL4A3BP-201ENST00000261415 RNASE13Q5GAN3 156 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 247 ms