RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 MEIG1Q5JSS6 88 aa12.24□□□□□ -0.45
VIM-201ENST00000224237 ADAMTSL4-AS1Q5T5F5 129 aa12.24□□□□□ -0.45
VIM-201ENST00000224237 FBN3Q75N90 2809 aa12.24□□□□□ -0.45
VIM-201ENST00000224237 RPL24P83731 157 aaKnown RBP12.23□□□□□ -0.45
VIM-201ENST00000224237 C6orf226Q5I0X4 101 aa12.23□□□□□ -0.45
VIM-201ENST00000224237 MUSTN1Q8IVN3 82 aa12.23□□□□□ -0.45
VIM-201ENST00000224237 UPK3BQ9BT76 320 aa12.23□□□□□ -0.45
VIM-201ENST00000224237 APOMO95445 188 aa12.22□□□□□ -0.45
VIM-201ENST00000224237 CFC1BP0CG36 223 aa12.21□□□□□ -0.45
VIM-201ENST00000224237 CFC1P0CG37 223 aa12.21□□□□□ -0.45
VIM-201ENST00000224237 PGPEP1Q9NXJ5 209 aa12.21□□□□□ -0.45
VIM-201ENST00000224237 IFITM1P13164 125 aa12.21□□□□□ -0.46
VIM-201ENST00000224237 CXCL5P42830 114 aa12.2□□□□□ -0.46
VIM-201ENST00000224237 CSMD3Q7Z407 3707 aa12.2□□□□□ -0.46
VIM-201ENST00000224237 CFAP161Q6P656 301 aa12.19□□□□□ -0.46
VIM-201ENST00000224237 A4D1N5 150 aa12.19□□□□□ -0.46
VIM-201ENST00000224237 NUPR2A6NF83 97 aa12.19□□□□□ -0.46
VIM-201ENST00000224237 KIAA0087Q14695 138 aa12.19□□□□□ -0.46
VIM-201ENST00000224237 OCIAD2Q56VL3 154 aa12.19□□□□□ -0.46
VIM-201ENST00000224237 COPS9Q8WXC6 57 aa12.19□□□□□ -0.46
VIM-201ENST00000224237 C1orf43Q9BWL3 253 aa12.19□□□□□ -0.46
VIM-201ENST00000224237 KLK5Q9Y337 293 aaPredicted RBP12.19□□□□□ -0.46
VIM-201ENST00000224237 DYNC2H1Q8NCM8 4307 aaKnown RBP12.18□□□□□ -0.46
VIM-201ENST00000224237 CKS1BP61024 79 aa12.18□□□□□ -0.46
VIM-201ENST00000224237 DAND5Q8N907 189 aa12.18□□□□□ -0.46
VIM-201ENST00000224237 PRO1854Q9UHT4 67 aa12.18□□□□□ -0.46
VIM-201ENST00000224237 APLNQ9ULZ1 77 aa12.18□□□□□ -0.46
VIM-201ENST00000224237 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.17□□□□□ -0.46
VIM-201ENST00000224237 A0A0U1RRA0 63 aa12.17□□□□□ -0.46
VIM-201ENST00000224237 IBA57-AS1B1ANH7 110 aa12.17□□□□□ -0.46
VIM-201ENST00000224237 F8W1H4 67 aa12.17□□□□□ -0.46
VIM-201ENST00000224237 TSPAN13O95857 204 aa12.17□□□□□ -0.46
VIM-201ENST00000224237 KRTAP26-1Q6PEX3 210 aa12.17□□□□□ -0.46
VIM-201ENST00000224237 NPC2P61916 151 aa12.16□□□□□ -0.46
VIM-201ENST00000224237 A0A0B4J2C4 111 aa12.15□□□□□ -0.46
VIM-201ENST00000224237 K7ERU9 68 aa12.15□□□□□ -0.46
VIM-201ENST00000224237 SPAG11BQ08648 103 aa12.15□□□□□ -0.46
VIM-201ENST00000224237 LYRM7Q5U5X0 104 aa12.15□□□□□ -0.46
VIM-201ENST00000224237 LINC00308Q8TCZ7 52 aa12.15□□□□□ -0.46
VIM-201ENST00000224237 C2orf82Q6UX34 121 aa12.14□□□□□ -0.47
VIM-201ENST00000224237 LYSTQ99698 3801 aa12.14□□□□□ -0.47
VIM-201ENST00000224237 IGKV2D-24A0A075B6R9 120 aa12.14□□□□□ -0.47
VIM-201ENST00000224237 PPDPFQ9H3Y8 114 aa12.14□□□□□ -0.47
VIM-201ENST00000224237 ERG28Q9UKR5 140 aa12.14□□□□□ -0.47
VIM-201ENST00000224237 DNAH7Q8WXX0 4024 aa12.13□□□□□ -0.47
VIM-201ENST00000224237 H3BMG7 143 aa12.13□□□□□ -0.47
VIM-201ENST00000224237 LINC00158P58513 81 aa12.13□□□□□ -0.47
VIM-201ENST00000224237 TENM2Q9NT68 2774 aa12.13□□□□□ -0.47
VIM-201ENST00000224237 UBE2DNLQ8IWF7 75 aa12.12□□□□□ -0.47
VIM-201ENST00000224237 MIR7-3HGQ8N6C7 128 aa12.12□□□□□ -0.47
VIM-201ENST00000224237 Q9HAA7 133 aa12.12□□□□□ -0.47
VIM-201ENST00000224237 LOC107984156A0A0G2JMH3 177 aa12.11□□□□□ -0.47
VIM-201ENST00000224237 EIF4EBP3O60516 100 aaPredicted RBP12.11□□□□□ -0.47
VIM-201ENST00000224237 ARL17AQ8IVW1 177 aa12.11□□□□□ -0.47
VIM-201ENST00000224237 TRBV20-1A0A075B6N2 111 aa12.1□□□□□ -0.47
VIM-201ENST00000224237 PFN2P35080 140 aa12.1□□□□□ -0.47
VIM-201ENST00000224237 CBY1Q9Y3M2 126 aa12.1□□□□□ -0.47
VIM-201ENST00000224237 COX17Q14061 63 aa12.1□□□□□ -0.47
VIM-201ENST00000224237 SOSTDC1Q6X4U4 206 aa12.1□□□□□ -0.47
VIM-201ENST00000224237 TGP01266 2768 aa12.09□□□□□ -0.47
VIM-201ENST00000224237 RMI2Q96E14 147 aa12.09□□□□□ -0.47
VIM-201ENST00000224237 DNAH1Q9P2D7 4330 aa12.09□□□□□ -0.47
VIM-201ENST00000224237 C6orf223Q8N319 242 aa12.08□□□□□ -0.48
VIM-201ENST00000224237 ZNF561-AS1K7EIQ3 104 aa12.08□□□□□ -0.48
VIM-201ENST00000224237 PLECQ15149 4684 aaKnown RBP12.08□□□□□ -0.48
VIM-201ENST00000224237 C15orf56Q8N910 161 aa12.07□□□□□ -0.48
VIM-201ENST00000224237 NTN5Q8WTR8 489 aaPredicted RBP12.07□□□□□ -0.48
VIM-201ENST00000224237 STARD9Q9P2P6 4700 aa12.07□□□□□ -0.48
VIM-201ENST00000224237 PSMB2P49721 201 aa12.06□□□□□ -0.48
VIM-201ENST00000224237 LINC00526Q96FQ7 95 aa12.06□□□□□ -0.48
VIM-201ENST00000224237 PRO0461Q9UI25 63 aa12.06□□□□□ -0.48
VIM-201ENST00000224237 SCGB1C2P0DMR2 95 aa12.06□□□□□ -0.48
VIM-201ENST00000224237 WFDC2Q14508 124 aa12.06□□□□□ -0.48
VIM-201ENST00000224237 UNQ6190/PRO20217Q6UXQ8 127 aa12.06□□□□□ -0.48
VIM-201ENST00000224237 HIGD2BQ4VC39 106 aa12.05□□□□□ -0.48
VIM-201ENST00000224237 GVQW2A0A096LPI5 108 aaPredicted RBP12.04□□□□□ -0.48
VIM-201ENST00000224237 C10orf25Q5T742 122 aa12.04□□□□□ -0.48
VIM-201ENST00000224237 MUC7Q8TAX7 377 aa12.04□□□□□ -0.48
VIM-201ENST00000224237 RNF151Q2KHN1 245 aa12.03□□□□□ -0.48
VIM-201ENST00000224237 C2orf48Q96LS8 159 aa12.03□□□□□ -0.48
VIM-201ENST00000224237 TRBV30A0A0K0K1B3 111 aa12.02□□□□□ -0.48
VIM-201ENST00000224237 TCL1BO95988 128 aa12.02□□□□□ -0.48
VIM-201ENST00000224237 C9orf116Q5BN46 136 aaPredicted RBP12.02□□□□□ -0.48
VIM-201ENST00000224237 CAMK2N2Q96S95 79 aa12.02□□□□□ -0.48
VIM-201ENST00000224237 SND1-IT1Q9HBX3 110 aa12.02□□□□□ -0.48
VIM-201ENST00000224237 F8WDY8 70 aa12.02□□□□□ -0.49
VIM-201ENST00000224237 Q1RN00 199 aa12.01□□□□□ -0.49
VIM-201ENST00000224237 KRTAP1-5Q9BYS1 174 aa12□□□□□ -0.49
VIM-201ENST00000224237 C6orf48Q9UBA6 75 aa12□□□□□ -0.49
VIM-201ENST00000224237 H7C2G1 150 aa12□□□□□ -0.49
VIM-201ENST00000224237 VPS25Q9BRG1 176 aa12□□□□□ -0.49
VIM-201ENST00000224237 RPL13AP40429 203 aaKnown RBP11.99□□□□□ -0.49
VIM-201ENST00000224237 ETDBQ3ZM63 59 aa11.99□□□□□ -0.49
VIM-201ENST00000224237 J3QR89 54 aa11.97□□□□□ -0.49
VIM-201ENST00000224237 TRAV13-2A0A0B4J235 113 aa11.97□□□□□ -0.49
VIM-201ENST00000224237 TTC32Q5I0X7 151 aa11.97□□□□□ -0.49
VIM-201ENST00000224237 Q6ZRU5 148 aa11.97□□□□□ -0.49
VIM-201ENST00000224237 USP17L23D6RBM5 183 aa11.96□□□□□ -0.49
VIM-201ENST00000224237 COX6CP09669 75 aa11.96□□□□□ -0.49
VIM-201ENST00000224237 SMCPP49901 116 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms