RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TMEM243Q9BU79 118 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 TRGV4A0A0C4DH28 118 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 BAALC-AS2P0C853 105 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 IFITM1P13164 125 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 SND1-IT1Q9HBX3 110 aa7.41□□□□□ -1.22
USP28-201ENST00000003302 DNAH10Q8IVF4 4471 aa7.41□□□□□ -1.22
USP28-201ENST00000003302 LINC00158P58513 81 aa7.41□□□□□ -1.22
USP28-201ENST00000003302 UBE2L6O14933 153 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 COX7B2Q8TF08 81 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 C14orf132Q9NPU4 83 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 CIRBPQ14011 172 aaKnown RBP7.4□□□□□ -1.22
USP28-201ENST00000003302 CMYA5Q8N3K9 4069 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 TRBV6-8A0A0A6YYG3 113 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 FAM236AA0A1B0GUQ0 79 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 FAM236BA0A1B0GV22 79 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 SS18Q15532 418 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 CSDC2Q9Y534 153 aaKnown RBP7.4□□□□□ -1.22
USP28-201ENST00000003302 NCR3O14931 201 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 IGLV1-51P01701 117 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 DEFB121Q5J5C9 76 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 YAE1D1Q9NRH1 226 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 KLK5Q9Y337 293 aaPredicted RBP7.39□□□□□ -1.23
USP28-201ENST00000003302 FAM19A3Q7Z5A8 133 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 A0A087WVE0 104 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 TRBV10-1A0A0K0K1A3 114 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 GAGE2AQ6NT46 116 aa7.38□□□□□ -1.23
USP28-201ENST00000003302 NANOS2P60321 138 aaKnown RBP7.37□□□□□ -1.23
USP28-201ENST00000003302 LECT2O14960 151 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 GYPEP15421 78 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 LINC00959A0A1B0GUT2 108 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 SDIM1Q6ZPB5 146 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 C6orf223Q8N319 242 aa7.36□□□□□ -1.23
USP28-201ENST00000003302 WFDC9Q8NEX5 89 aa7.36□□□□□ -1.23
USP28-201ENST00000003302 PAX4O43316 350 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 OR13C6PQ8NH95 151 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 IGKV3D-7A0A0C4DH55 119 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 C10orf25Q5T742 122 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 X6R8D5 127 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 TRBV6-4A0A1B0GX49 114 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 C16orf74Q96GX8 76 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 LINC00846Q9NV44 126 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 SMIM20Q8N5G0 67 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 CRPP02741 224 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 LINC00269Q8N2A0 174 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 CELA1Q9UNI1 258 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 A0A087WZ39 114 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 RPL28P46779 137 aaKnown RBP7.34□□□□□ -1.23
USP28-201ENST00000003302 DEFB135Q30KP9 77 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 MALP21145 153 aa7.34□□□□□ -1.24
USP28-201ENST00000003302 M0R2N4 97 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 OVOL2Q9BRP0 275 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 TRAV25A0A0B4J276 109 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 FAM222AQ5U5X8 452 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 TRBV7-7A0A0K0K1E9 115 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 LRRC75A-AS1Q8N1F1 130 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 FAM240AA0A1B0GVK7 77 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 C6orf226Q5I0X4 101 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 TRACP01848 142 aa7.31□□□□□ -1.24
USP28-201ENST00000003302 Q6Q795 121 aa7.31□□□□□ -1.24
USP28-201ENST00000003302 KIAA0087Q14695 138 aa7.31□□□□□ -1.24
USP28-201ENST00000003302 CXCL5P42830 114 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 HILS1P60008 231 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 RNASE1P07998 156 aaKnown RBP7.3□□□□□ -1.24
USP28-201ENST00000003302 HERV-K104P63124 156 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 DNAH7Q8WXX0 4024 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 HTN3P15516 51 aa7.29□□□□□ -1.24
USP28-201ENST00000003302 LOC107984640A0A0U1RRK4 108 aa7.28□□□□□ -1.24
USP28-201ENST00000003302 UNQ6190/PRO20217Q6UXQ8 127 aa7.28□□□□□ -1.24
USP28-201ENST00000003302 TRAV13-2A0A0B4J235 113 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 DNAH9Q9NYC9 4486 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 ANGP03950 147 aaKnown RBP7.27□□□□□ -1.25
USP28-201ENST00000003302 TMEM86BQ8N661 226 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 LINC01561Q8N1V8 128 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 IBA57-AS1B1ANH7 110 aa7.26□□□□□ -1.25
USP28-201ENST00000003302 CHCHD10Q8WYQ3 142 aaPredicted RBP7.26□□□□□ -1.25
USP28-201ENST00000003302 C2orf48Q96LS8 159 aa7.26□□□□□ -1.25
USP28-201ENST00000003302 DNAL4O96015 105 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 STAB2Q8WWQ8 2551 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 MRPL23Q16540 153 aaKnown RBP7.25□□□□□ -1.25
USP28-201ENST00000003302 C6orf99Q4VX62 202 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 LINC00643Q86TS7 51 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 XAGE1AQ9HD64 81 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 MGAM2Q2M2H8 2515 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 PPDPFQ9H3Y8 114 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 LINC00612Q8N6U2 182 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 PF4P02776 101 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 IGHV4-28A0A0C4DH34 117 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 FAM19A1Q7Z5A9 133 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 OBSCN-AS1Q96MR7 158 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 C16orf95Q9H693 158 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 INAFM1C9JVW0 142 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 REG3AQ06141 175 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 RETNQ9HD89 108 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 hADV29S1A0JD25 119 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 LY6G6DO95868 133 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 PRO0255Q9UI72 69 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 KIR2DL5BQ8NHK3 375 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 KLK12Q9UKR0 248 aa7.21□□□□□ -1.25
USP28-201ENST00000003302 RPL18AQ02543 176 aaKnown RBP7.21□□□□□ -1.26
USP28-201ENST00000003302 Q8IZM0 81 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms