RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 WFDC10AQ9H1F0 79 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 TRAV7A0A075B6U4 112 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 TRBV6-4A0A1B0GX49 114 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 TMEM223A0PJW6 202 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 H3BS24 57 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 SPATA3Q8NHX4 192 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 SPRR3Q9UBC9 169 aa2.13□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV1-9A0A0C4DH69 117 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGFL4Q6B9Z1 124 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 SPINT4Q6UDR6 99 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 C11orf53Q8IXP5 236 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 ODF3Q96PU9 254 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV4-38-2P0DP08 117 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 CIRBP-AS1Q8TBR5 109 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 CELA1Q9UNI1 258 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV4-61A0A0C4DH41 118 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 VWFP04275 2813 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 Q8NA96 180 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 A0A0J9YWU9 116 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV2-29A2NJV5 120 aaPredicted RBP2.12□□□□□ -2.07
SCN1A-219ENST00000641575 NUPR1O60356 82 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 REG3AQ06141 175 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 C6orf99Q4VX62 202 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 SOSTDC1Q6X4U4 206 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 Q6ZQT7 251 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 Q8TCH9 128 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 THSD7BQ9C0I4 1608 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV1D-17A0A075B6S4 117 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV1-8A0A0C4DH67 115 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 Q6JHZ5 121 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 C22orf34Q6ZV56 151 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 KTN1-AS1Q86SY8 53 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 C16orf90A8MZG2 172 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 FAM201AQ5SY85 155 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 SBSPONQ8IVN8 264 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 MGAQ8IWI9 3026 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 A0A0G2JRQ6 117 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 LHFPL1Q86WI0 220 aa2.12□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV3-9A0A075B6K5 115 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 EBI3Q14213 229 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV1-27A0A075B6S5 117 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 TRBV10-3A0A0K0K1G6 114 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 Q6Q795 121 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 MAPK1IP1LQ8NDC0 245 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 RPL39LQ96EH5 51 aaKnown RBP2.11□□□□□ -2.07
SCN1A-219ENST00000641575 IGKV1-17P01599 117 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 LINC00173Q6ZV60 143 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 TOMM6Q96B49 74 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 ZNF837Q96EG3 531 aaPredicted RBP2.11□□□□□ -2.07
SCN1A-219ENST00000641575 FSTL3O95633 263 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 RETNLBQ9BQ08 111 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 TNRC18O15417 2968 aaPredicted RBP2.11□□□□□ -2.07
SCN1A-219ENST00000641575 FXYD5Q96DB9 178 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 CTSZQ9UBR2 303 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 PYGO1Q9Y3Y4 419 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 C8orf87E5RJ46 101 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 CRYGAP11844 174 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 C5orf56Q8N8D9 126 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 RPL37AP8A6NKH3 93 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 H3BRN7 92 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 C10orf55Q5SWW7 151 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 CD164L2Q6UWJ8 174 aa2.11□□□□□ -2.07
SCN1A-219ENST00000641575 FAM30AQ9NZY2 134 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 DCHS2Q6V1P9 2916 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 TNFRSF13BO14836 293 aaPredicted RBP2.1□□□□□ -2.07
SCN1A-219ENST00000641575 CRIPAKQ8N1N5 446 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV10-54A0A075B6I4 117 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 TRBV6-1A0A0K0K1D8 114 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 M0R2N4 97 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 Q6YL49 198 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 LINC00526Q96FQ7 95 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV7-46A0A075B6I9 117 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 ODF3BA8MYP8 253 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV4-30-4P0DP06 118 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 IGHV4-31P0DP07 118 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 C9orf163Q8N9P6 203 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 SPINK6Q6UWN8 80 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.1□□□□□ -2.07
SCN1A-219ENST00000641575 Q8N2B8 174 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 C6orf223Q8N319 242 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 PRR25Q96S07 402 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 ZNRD1Q9P1U0 126 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 C11orf86A6NJI1 115 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 BCE1O60756 84 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 SMIM10L1P0DMW3 83 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 LELP1Q5T871 98 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 SMIM10Q96HG1 83 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 TP53AIP1Q9HCN2 124 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 LYNX1G3V0Z9 82 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 SYCNQ0VAF6 134 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 COL4A6Q14031 1691 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 ERC2-IT1O76042 136 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 WFDC13Q8IUB5 93 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 A8MZ25 164 aa2.1□□□□□ -2.07
SCN1A-219ENST00000641575 IGLV2-18A0A075B6J9 118 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 CFAP126Q5VTH2 177 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 ZNF833PQ6ZTB9 187 aa2.09□□□□□ -2.07
SCN1A-219ENST00000641575 IGFBP6P24592 240 aaPredicted RBP2.09□□□□□ -2.07
SCN1A-219ENST00000641575 IGFL2Q6UWQ7 119 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms