RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 E9PLD3 99 aa12.54□□□□□ -0.4
CLN3-254ENST00000637050 LINC00269Q8N2A0 174 aa12.54□□□□□ -0.4
CLN3-254ENST00000637050 IGKV3OR2-268A0A0C4DH90 116 aa12.54□□□□□ -0.4
CLN3-254ENST00000637050 NUPR2A6NF83 97 aa12.54□□□□□ -0.4
CLN3-254ENST00000637050 LINC00588Q9Y4M8 146 aa12.54□□□□□ -0.4
CLN3-254ENST00000637050 COX8AP10176 69 aa12.53□□□□□ -0.4
CLN3-254ENST00000637050 NMUP48645 174 aa12.53□□□□□ -0.4
CLN3-254ENST00000637050 CCL18P55774 89 aa12.53□□□□□ -0.4
CLN3-254ENST00000637050 HERVK_113P61574 105 aa12.53□□□□□ -0.4
CLN3-254ENST00000637050 CDKN2A-AS1Q9UH64 79 aa12.53□□□□□ -0.4
CLN3-254ENST00000637050 APLNQ9ULZ1 77 aa12.53□□□□□ -0.4
CLN3-254ENST00000637050 REG3AQ06141 175 aa12.52□□□□□ -0.4
CLN3-254ENST00000637050 IGHV3-30P01768 117 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 IGHV3-33P01772 117 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 IGHV3-30-3P0DP02 117 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 IGHV3-30-5P0DP03 117 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 VAMP3Q15836 100 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 CLPSL2Q6UWE3 100 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 PRR34Q9NV39 138 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 SCGB1A1P11684 91 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 SS18Q15532 418 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 LINC01556Q5JQF7 62 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 KLK12Q9UKR0 248 aa12.51□□□□□ -0.41
CLN3-254ENST00000637050 FBN3Q75N90 2809 aa12.5□□□□□ -0.41
CLN3-254ENST00000637050 SLC25A34Q6PIV7 304 aa12.5□□□□□ -0.41
CLN3-254ENST00000637050 PCP2Q8IVA1 136 aa12.5□□□□□ -0.41
CLN3-254ENST00000637050 KLK5Q9Y337 293 aaPredicted RBP12.5□□□□□ -0.41
CLN3-254ENST00000637050 H3BRM9 83 aa12.49□□□□□ -0.41
CLN3-254ENST00000637050 BOD1L2Q8IYS8 172 aa12.49□□□□□ -0.41
CLN3-254ENST00000637050 UPK3BQ9BT76 320 aa12.49□□□□□ -0.41
CLN3-254ENST00000637050 DNAH10OSP0CZ25 163 aa12.48□□□□□ -0.41
CLN3-254ENST00000637050 TP73-AS1Q9UF72 201 aa12.48□□□□□ -0.41
CLN3-254ENST00000637050 IGHV3OR16-9A0A0B4J2B5 98 aa12.48□□□□□ -0.41
CLN3-254ENST00000637050 LEPROTO15243 131 aa12.48□□□□□ -0.41
CLN3-254ENST00000637050 ENHOQ6UWT2 76 aa12.48□□□□□ -0.41
CLN3-254ENST00000637050 TTTY13Q9BZ97 58 aa12.48□□□□□ -0.41
CLN3-254ENST00000637050 A6NJY4 79 aa12.47□□□□□ -0.41
CLN3-254ENST00000637050 SPINK8P0C7L1 97 aa12.47□□□□□ -0.41
CLN3-254ENST00000637050 TRAV8-3A0A0A6YYJ7 113 aa12.46□□□□□ -0.41
CLN3-254ENST00000637050 IGHV1-58A0A0C4DH39 117 aa12.46□□□□□ -0.41
CLN3-254ENST00000637050 SIVA1O15304 175 aa12.46□□□□□ -0.41
CLN3-254ENST00000637050 IGHV3-64A0A075B6Q5 118 aa12.45□□□□□ -0.42
CLN3-254ENST00000637050 TSPEAR-AS2P59090 65 aa12.45□□□□□ -0.42
CLN3-254ENST00000637050 MAPKAPK5-AS1Q8N8E1 139 aa12.45□□□□□ -0.42
CLN3-254ENST00000637050 PLEKHB2Q96CS7 222 aa12.45□□□□□ -0.42
CLN3-254ENST00000637050 SMIM1B2RUZ4 78 aa12.45□□□□□ -0.42
CLN3-254ENST00000637050 J3QQQ9 107 aa12.45□□□□□ -0.42
CLN3-254ENST00000637050 XCL1P47992 114 aa12.45□□□□□ -0.42
CLN3-254ENST00000637050 CHCHD10Q8WYQ3 142 aaPredicted RBP12.45□□□□□ -0.42
CLN3-254ENST00000637050 IGLV5-39A0A0G2JS06 123 aa12.44□□□□□ -0.42
CLN3-254ENST00000637050 CRPP02741 224 aa12.44□□□□□ -0.42
CLN3-254ENST00000637050 CD164L2Q6UWJ8 174 aa12.44□□□□□ -0.42
CLN3-254ENST00000637050 UBE2WQ96B02 151 aa12.44□□□□□ -0.42
CLN3-254ENST00000637050 IGLV10-54A0A075B6I4 117 aa12.43□□□□□ -0.42
CLN3-254ENST00000637050 A0A087WZ39 114 aa12.43□□□□□ -0.42
CLN3-254ENST00000637050 TRAV8-4A0A0B4J246 113 aa12.42□□□□□ -0.42
CLN3-254ENST00000637050 A0A1B0GV72 72 aa12.42□□□□□ -0.42
CLN3-254ENST00000637050 MIAQ16674 131 aa12.42□□□□□ -0.42
CLN3-254ENST00000637050 CFAP161Q6P656 301 aa12.42□□□□□ -0.42
CLN3-254ENST00000637050 MYMXA0A1B0GTQ4 84 aa12.42□□□□□ -0.42
CLN3-254ENST00000637050 LGALS3P17931 250 aaKnown RBP12.42□□□□□ -0.42
CLN3-254ENST00000637050 HINT1P49773 126 aaPredicted RBP12.42□□□□□ -0.42
CLN3-254ENST00000637050 C2orf91Q6ZV80 131 aa12.41□□□□□ -0.42
CLN3-254ENST00000637050 C5orf38Q86SI9 138 aa12.41□□□□□ -0.42
CLN3-254ENST00000637050 Q9H8V8 135 aa12.41□□□□□ -0.42
CLN3-254ENST00000637050 ZNF815PA8K554 130 aa12.4□□□□□ -0.42
CLN3-254ENST00000637050 FOXI1Q12951 378 aa12.4□□□□□ -0.42
CLN3-254ENST00000637050 LINC01561Q8N1V8 128 aa12.4□□□□□ -0.42
CLN3-254ENST00000637050 ZFAND6Q6FIF0 208 aa12.39□□□□□ -0.43
CLN3-254ENST00000637050 MUC7Q8TAX7 377 aa12.39□□□□□ -0.43
CLN3-254ENST00000637050 UBE2DNLQ8IWF7 75 aa12.38□□□□□ -0.43
CLN3-254ENST00000637050 GAGE12HA6NDE8 117 aa12.38□□□□□ -0.43
CLN3-254ENST00000637050 IBA57-AS1B1ANH7 110 aa12.38□□□□□ -0.43
CLN3-254ENST00000637050 COX7A2LO14548 114 aa12.38□□□□□ -0.43
CLN3-254ENST00000637050 DYNC2H1Q8NCM8 4307 aaKnown RBP12.37□□□□□ -0.43
CLN3-254ENST00000637050 GTF2H5Q6ZYL4 71 aa12.37□□□□□ -0.43
CLN3-254ENST00000637050 WWC2-AS2Q96NR7 200 aa12.37□□□□□ -0.43
CLN3-254ENST00000637050 HIGD1BQ9P298 99 aa12.37□□□□□ -0.43
CLN3-254ENST00000637050 KRTAP26-1Q6PEX3 210 aa12.36□□□□□ -0.43
CLN3-254ENST00000637050 C10orf126Q8N4M7 172 aa12.36□□□□□ -0.43
CLN3-254ENST00000637050 NDUFA12Q9UI09 145 aa12.35□□□□□ -0.43
CLN3-254ENST00000637050 CSMD3Q7Z407 3707 aa12.35□□□□□ -0.43
CLN3-254ENST00000637050 COX7B2Q8TF08 81 aa12.34□□□□□ -0.43
CLN3-254ENST00000637050 DNAH7Q8WXX0 4024 aa12.34□□□□□ -0.43
CLN3-254ENST00000637050 NDUFA1O15239 70 aa12.33□□□□□ -0.44
CLN3-254ENST00000637050 MTURNQ8N3F0 131 aa12.33□□□□□ -0.44
CLN3-254ENST00000637050 C1orf43Q9BWL3 253 aa12.33□□□□□ -0.44
CLN3-254ENST00000637050 MALP21145 153 aa12.32□□□□□ -0.44
CLN3-254ENST00000637050 SCGB1D4Q6XE38 83 aa12.32□□□□□ -0.44
CLN3-254ENST00000637050 TAX1BP3O14907 124 aa12.32□□□□□ -0.44
CLN3-254ENST00000637050 ZNF625Q96I27 306 aaPredicted RBP12.32□□□□□ -0.44
CLN3-254ENST00000637050 Q9HAA7 133 aa12.31□□□□□ -0.44
CLN3-254ENST00000637050 TOMM7Q9P0U1 55 aa12.31□□□□□ -0.44
CLN3-254ENST00000637050 IGKV2D-24A0A075B6R9 120 aa12.3□□□□□ -0.44
CLN3-254ENST00000637050 A0A0J9YXY3 114 aa12.3□□□□□ -0.44
CLN3-254ENST00000637050 Q8IZM0 81 aa12.3□□□□□ -0.44
CLN3-254ENST00000637050 APOMO95445 188 aa12.29□□□□□ -0.44
CLN3-254ENST00000637050 KRTAP1-5Q9BYS1 174 aa12.29□□□□□ -0.44
CLN3-254ENST00000637050 KIAA0087Q14695 138 aa12.29□□□□□ -0.44
CLN3-254ENST00000637050 HSD52Q0P140 79 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms