RNA–Protein interactions for RNA: ENST00000636549.1

CACNA1A-227, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 6,792 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-227ENST00000636549 Q9UF83 564 aa13.04□□□□□ -0.32
CACNA1A-227ENST00000636549 LINC00474Q9P2X8 69 aa13.04□□□□□ -0.32
CACNA1A-227ENST00000636549 CEP192Q8TEP8 1941 aa13.04□□□□□ -0.32
CACNA1A-227ENST00000636549 IBA57-AS1B1ANH7 110 aa13.04□□□□□ -0.32
CACNA1A-227ENST00000636549 COX6A2Q02221 97 aa13.04□□□□□ -0.32
CACNA1A-227ENST00000636549 KIAA1549LQ6ZVL6 1849 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 IGKV2D-30A0A075B6S6 120 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 IGKV2-30P06310 120 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 TRBV6-4A0A1B0GX49 114 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 SPACA4Q8TDM5 124 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 PRR9Q5T870 116 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 LINC00643Q86TS7 51 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 ATG2AQ2TAZ0 1938 aa13.03□□□□□ -0.32
CACNA1A-227ENST00000636549 TET2Q6N021 2002 aaPredicted RBP13.02□□□□□ -0.33
CACNA1A-227ENST00000636549 H7C423 109 aa13.02□□□□□ -0.33
CACNA1A-227ENST00000636549 LST1O00453 97 aa13.02□□□□□ -0.33
CACNA1A-227ENST00000636549 LINC00208Q96KT6 92 aa13.01□□□□□ -0.33
CACNA1A-227ENST00000636549 ZNF73O43830 326 aaPredicted RBP13.01□□□□□ -0.33
CACNA1A-227ENST00000636549 C2orf48Q96LS8 159 aa13.01□□□□□ -0.33
CACNA1A-227ENST00000636549 CRIP1P50238 77 aa13.01□□□□□ -0.33
CACNA1A-227ENST00000636549 MRPS12O15235 138 aaKnown RBP13□□□□□ -0.33
CACNA1A-227ENST00000636549 FBXL19-AS1Q494R0 122 aa13□□□□□ -0.33
CACNA1A-227ENST00000636549 Q9BRP9 147 aa13□□□□□ -0.33
CACNA1A-227ENST00000636549 OTOGLQ3ZCN5 2332 aa12.99□□□□□ -0.33
CACNA1A-227ENST00000636549 LINC01547P58512 204 aaPredicted RBP12.99□□□□□ -0.33
CACNA1A-227ENST00000636549 MBD6Q96DN6 1003 aa12.99□□□□□ -0.33
CACNA1A-227ENST00000636549 COL5A1P20908 1838 aaPredicted RBP12.99□□□□□ -0.33
CACNA1A-227ENST00000636549 SPRY4Q9C004 299 aa12.99□□□□□ -0.33
CACNA1A-227ENST00000636549 AVPP01185 164 aa12.99□□□□□ -0.33
CACNA1A-227ENST00000636549 PRR14LQ5THK1 2151 aa12.98□□□□□ -0.33
CACNA1A-227ENST00000636549 FAM208BQ5VWN6 2430 aa12.98□□□□□ -0.33
CACNA1A-227ENST00000636549 TSHBP01222 138 aa12.98□□□□□ -0.33
CACNA1A-227ENST00000636549 FAM19A3Q7Z5A8 133 aa12.98□□□□□ -0.33
CACNA1A-227ENST00000636549 PSMG3-AS1Q96PY0 264 aa12.98□□□□□ -0.33
CACNA1A-227ENST00000636549 A8MTW9 85 aa12.97□□□□□ -0.33
CACNA1A-227ENST00000636549 HIGD1BQ9P298 99 aa12.97□□□□□ -0.33
CACNA1A-227ENST00000636549 CHTF8P0CG12 524 aa12.96□□□□□ -0.33
CACNA1A-227ENST00000636549 C7orf65Q6ZTY9 151 aa12.96□□□□□ -0.33
CACNA1A-227ENST00000636549 ARHGAP32A7KAX9 2087 aa12.96□□□□□ -0.34
CACNA1A-227ENST00000636549 CRYGAP11844 174 aa12.96□□□□□ -0.34
CACNA1A-227ENST00000636549 MUC6Q6W4X9 2439 aa12.96□□□□□ -0.34
CACNA1A-227ENST00000636549 GAS8-AS1O95177 125 aa12.96□□□□□ -0.34
CACNA1A-227ENST00000636549 HIVEP2P31629 2446 aa12.94□□□□□ -0.34
CACNA1A-227ENST00000636549 C11orf71Q6IPW1 123 aa12.94□□□□□ -0.34
CACNA1A-227ENST00000636549 PSPHP1O15172 72 aa12.94□□□□□ -0.34
CACNA1A-227ENST00000636549 MRGPRG-AS1Q2M3A8 158 aa12.94□□□□□ -0.34
CACNA1A-227ENST00000636549 J3QL48 77 aa12.94□□□□□ -0.34
CACNA1A-227ENST00000636549 EBI3Q14213 229 aa12.94□□□□□ -0.34
CACNA1A-227ENST00000636549 TRBV10-3A0A0K0K1G6 114 aa12.93□□□□□ -0.34
CACNA1A-227ENST00000636549 TECTAO75443 2155 aa12.92□□□□□ -0.34
CACNA1A-227ENST00000636549 RNF185Q96GF1 192 aa12.92□□□□□ -0.34
CACNA1A-227ENST00000636549 SORL1Q92673 2214 aa12.92□□□□□ -0.34
CACNA1A-227ENST00000636549 COL4A4P53420 1690 aaPredicted RBP12.92□□□□□ -0.34
CACNA1A-227ENST00000636549 ODF3Q96PU9 254 aa12.92□□□□□ -0.34
CACNA1A-227ENST00000636549 A0A1B0GXF2 115 aa12.92□□□□□ -0.34
CACNA1A-227ENST00000636549 IGLV8-61A0A075B6I0 122 aa12.91□□□□□ -0.34
CACNA1A-227ENST00000636549 IGLV4-60A0A075B6I1 120 aa12.9□□□□□ -0.34
CACNA1A-227ENST00000636549 RNASE3P12724 160 aaKnown RBP12.9□□□□□ -0.34
CACNA1A-227ENST00000636549 PRRC2AP48634 2157 aaKnown RBP12.9□□□□□ -0.34
CACNA1A-227ENST00000636549 PCDH15Q96QU1 1955 aa12.89□□□□□ -0.35
CACNA1A-227ENST00000636549 SRCAPQ6ZRS2 3230 aa12.88□□□□□ -0.35
CACNA1A-227ENST00000636549 A0A087WYN8 130 aa12.87□□□□□ -0.35
CACNA1A-227ENST00000636549 MDFIQ99750 246 aa12.87□□□□□ -0.35
CACNA1A-227ENST00000636549 ALPK3Q96L96 1907 aa12.86□□□□□ -0.35
CACNA1A-227ENST00000636549 HCG22E2RYF7 251 aa12.86□□□□□ -0.35
CACNA1A-227ENST00000636549 A0A087WSZ3 146 aa12.86□□□□□ -0.35
CACNA1A-227ENST00000636549 HCFC1P51610 2035 aa12.86□□□□□ -0.35
CACNA1A-227ENST00000636549 C11orf21Q9P2W6 132 aa12.85□□□□□ -0.35
CACNA1A-227ENST00000636549 PCNX3Q9H6A9 2034 aa12.85□□□□□ -0.35
CACNA1A-227ENST00000636549 V9GYY9 64 aa12.85□□□□□ -0.35
CACNA1A-227ENST00000636549 BRWD1-AS2P59051 145 aa12.84□□□□□ -0.35
CACNA1A-227ENST00000636549 LINC00694P0DN24 101 aa12.84□□□□□ -0.35
CACNA1A-227ENST00000636549 UQCRQO14949 82 aa12.84□□□□□ -0.35
CACNA1A-227ENST00000636549 LINC00242Q5T6M2 205 aa12.83□□□□□ -0.36
CACNA1A-227ENST00000636549 H0Y9P7 68 aa12.83□□□□□ -0.36
CACNA1A-227ENST00000636549 CCDC179H3BU77 68 aa12.83□□□□□ -0.36
CACNA1A-227ENST00000636549 A0A087WVE0 104 aa12.82□□□□□ -0.36
CACNA1A-227ENST00000636549 TRBV30A0A0K0K1B3 111 aa12.81□□□□□ -0.36
CACNA1A-227ENST00000636549 CDC42SE2Q9NRR3 84 aa12.81□□□□□ -0.36
CACNA1A-227ENST00000636549 LINC00575Q6W349 94 aa12.8□□□□□ -0.36
CACNA1A-227ENST00000636549 C16orf90A8MZG2 172 aa12.8□□□□□ -0.36
CACNA1A-227ENST00000636549 FAM229AH3BQW9 127 aa12.8□□□□□ -0.36
CACNA1A-227ENST00000636549 MOBPQ13875 183 aa12.79□□□□□ -0.36
CACNA1A-227ENST00000636549 Q6ZPA2 131 aa12.78□□□□□ -0.36
CACNA1A-227ENST00000636549 PMAIP1Q13794 54 aa12.78□□□□□ -0.36
CACNA1A-227ENST00000636549 COX6B2Q6YFQ2 88 aa12.77□□□□□ -0.37
CACNA1A-227ENST00000636549 ZNF580Q9UK33 172 aa12.77□□□□□ -0.37
CACNA1A-227ENST00000636549 CUL9Q8IWT3 2517 aa12.76□□□□□ -0.37
CACNA1A-227ENST00000636549 NRACQ8N912 160 aa12.76□□□□□ -0.37
CACNA1A-227ENST00000636549 ODF3L2Q3SX64 289 aa12.76□□□□□ -0.37
CACNA1A-227ENST00000636549 COX17Q14061 63 aa12.76□□□□□ -0.37
CACNA1A-227ENST00000636549 Q8IZM0 81 aa12.75□□□□□ -0.37
CACNA1A-227ENST00000636549 PTPN13Q12923 2485 aa12.75□□□□□ -0.37
CACNA1A-227ENST00000636549 PLXNB1O43157 2135 aa12.75□□□□□ -0.37
CACNA1A-227ENST00000636549 Q6ZSN1 163 aa12.75□□□□□ -0.37
CACNA1A-227ENST00000636549 FHL2Q14192 279 aa12.74□□□□□ -0.37
CACNA1A-227ENST00000636549 LYPD5Q6UWN5 251 aa12.74□□□□□ -0.37
CACNA1A-227ENST00000636549 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.74□□□□□ -0.37
CACNA1A-227ENST00000636549 Q6ZRU5 148 aa12.74□□□□□ -0.37
CACNA1A-227ENST00000636549 Q8N814 137 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms