RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SPCS1Q9Y6A9 102 aa15.36■□□□□ 0.05
PNKP-220ENST00000627232 CYSRT1A8MQ03 144 aa15.35■□□□□ 0.05
PNKP-220ENST00000627232 RPL24P83731 157 aaKnown RBP15.35■□□□□ 0.05
PNKP-220ENST00000627232 SPANXDQ9BXN6 97 aa15.35■□□□□ 0.05
PNKP-220ENST00000627232 SPANXCQ9NY87 97 aa15.35■□□□□ 0.05
PNKP-220ENST00000627232 FLNBO75369 2602 aaKnown RBP15.34■□□□□ 0.05
PNKP-220ENST00000627232 SH2D6Q7Z4S9 175 aa15.32■□□□□ 0.04
PNKP-220ENST00000627232 MUSTN1Q8IVN3 82 aa15.32■□□□□ 0.04
PNKP-220ENST00000627232 APOMO95445 188 aa15.3■□□□□ 0.04
PNKP-220ENST00000627232 CFC1BP0CG36 223 aa15.3■□□□□ 0.04
PNKP-220ENST00000627232 CFC1P0CG37 223 aa15.3■□□□□ 0.04
PNKP-220ENST00000627232 MRPL23Q16540 153 aaKnown RBP15.3■□□□□ 0.04
PNKP-220ENST00000627232 PGPEP1Q9NXJ5 209 aa15.3■□□□□ 0.04
PNKP-220ENST00000627232 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.29■□□□□ 0.04
PNKP-220ENST00000627232 A4D1N5 150 aa15.29■□□□□ 0.04
PNKP-220ENST00000627232 RBX1P62877 108 aa15.29■□□□□ 0.04
PNKP-220ENST00000627232 MIAQ16674 131 aa15.29■□□□□ 0.04
PNKP-220ENST00000627232 A0A096LPF7 62 aa15.28■□□□□ 0.04
PNKP-220ENST00000627232 TMEM262E9PQX1 116 aa15.28■□□□□ 0.04
PNKP-220ENST00000627232 A0A0B4J2C4 111 aa15.27■□□□□ 0.04
PNKP-220ENST00000627232 CIRBPQ14011 172 aaKnown RBP15.27■□□□□ 0.04
PNKP-220ENST00000627232 ADAMTSL4-AS1Q5T5F5 129 aa15.27■□□□□ 0.04
PNKP-220ENST00000627232 Q9H8V8 135 aa15.27■□□□□ 0.04
PNKP-220ENST00000627232 IGHV3OR16-9A0A0B4J2B5 98 aa15.27■□□□□ 0.03
PNKP-220ENST00000627232 LINC00959A0A1B0GUT2 108 aa15.27■□□□□ 0.03
PNKP-220ENST00000627232 IFITM1P13164 125 aa15.27■□□□□ 0.03
PNKP-220ENST00000627232 HERV-K104P63124 156 aa15.27■□□□□ 0.03
PNKP-220ENST00000627232 PRO1854Q9UHT4 67 aa15.27■□□□□ 0.03
PNKP-220ENST00000627232 ICOSQ9Y6W8 199 aa15.27■□□□□ 0.03
PNKP-220ENST00000627232 IGKV3OR2-268A0A0C4DH90 116 aa15.26■□□□□ 0.03
PNKP-220ENST00000627232 TSPAN13O95857 204 aa15.26■□□□□ 0.03
PNKP-220ENST00000627232 ZNF625Q96I27 306 aaPredicted RBP15.26■□□□□ 0.03
PNKP-220ENST00000627232 C11orf68Q9H3H3 251 aaKnown RBP15.26■□□□□ 0.03
PNKP-220ENST00000627232 A0A087WZ39 114 aa15.24■□□□□ 0.03
PNKP-220ENST00000627232 HTN3P15516 51 aa15.24■□□□□ 0.03
PNKP-220ENST00000627232 SS18Q15532 418 aa15.24■□□□□ 0.03
PNKP-220ENST00000627232 G3V4G9 280 aa15.23■□□□□ 0.03
PNKP-220ENST00000627232 PRSS2P07478 247 aa15.23■□□□□ 0.03
PNKP-220ENST00000627232 RETNQ9HD89 108 aa15.23■□□□□ 0.03
PNKP-220ENST00000627232 COX7B2Q8TF08 81 aa15.22■□□□□ 0.03
PNKP-220ENST00000627232 LELP1Q5T871 98 aa15.22■□□□□ 0.03
PNKP-220ENST00000627232 LYRM7Q5U5X0 104 aa15.22■□□□□ 0.03
PNKP-220ENST00000627232 H3BNG1 76 aa15.21■□□□□ 0.03
PNKP-220ENST00000627232 LINC01561Q8N1V8 128 aa15.21■□□□□ 0.03
PNKP-220ENST00000627232 EIF4EBP3O60516 100 aaPredicted RBP15.2■□□□□ 0.02
PNKP-220ENST00000627232 IGHV3-33P01772 117 aa15.19■□□□□ 0.02
PNKP-220ENST00000627232 COPS9Q8WXC6 57 aa15.19■□□□□ 0.02
PNKP-220ENST00000627232 PPDPFQ9H3Y8 114 aa15.18■□□□□ 0.02
PNKP-220ENST00000627232 ERG28Q9UKR5 140 aa15.17■□□□□ 0.02
PNKP-220ENST00000627232 BAHCC1Q9P281 2608 aa15.17■□□□□ 0.02
PNKP-220ENST00000627232 MEIG1Q5JSS6 88 aa15.17■□□□□ 0.02
PNKP-220ENST00000627232 NBEAL2Q6ZNJ1 2754 aa15.17■□□□□ 0.02
PNKP-220ENST00000627232 TRRAPQ9Y4A5 3859 aa15.16■□□□□ 0.02
PNKP-220ENST00000627232 SFTA2Q6UW10 78 aa15.16■□□□□ 0.02
PNKP-220ENST00000627232 C5orf38Q86SI9 138 aa15.16■□□□□ 0.02
PNKP-220ENST00000627232 FBN1P35555 2871 aaKnown RBP15.15■□□□□ 0.02
PNKP-220ENST00000627232 LINC00308Q8TCZ7 52 aa15.15■□□□□ 0.02
PNKP-220ENST00000627232 LOC107984156A0A0G2JMH3 177 aa15.14■□□□□ 0.01
PNKP-220ENST00000627232 ARL17AQ8IVW1 177 aa15.14■□□□□ 0.01
PNKP-220ENST00000627232 LINC00269Q8N2A0 174 aa15.14■□□□□ 0.01
PNKP-220ENST00000627232 ANGP03950 147 aaKnown RBP15.13■□□□□ 0.01
PNKP-220ENST00000627232 XCL1P47992 114 aa15.13■□□□□ 0.01
PNKP-220ENST00000627232 TOMM7Q9P0U1 55 aa15.13■□□□□ 0.01
PNKP-220ENST00000627232 F8W1H4 67 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 NPC2P61916 151 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 REG3AQ06141 175 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 DAND5Q8N907 189 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 H3BMG7 143 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 CLPSL2Q6UWE3 100 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 CD164L2Q6UWJ8 174 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 LYPD5Q6UWN5 251 aa15.12■□□□□ 0.01
PNKP-220ENST00000627232 TRBV20-1A0A075B6N2 111 aa15.11■□□□□ 0.01
PNKP-220ENST00000627232 Q6ZTC4 211 aa15.1■□□□□ 0.01
PNKP-220ENST00000627232 A0A0J9YWU9 116 aa15.09■□□□□ 0.01
PNKP-220ENST00000627232 KPRPQ5T749 579 aaPredicted RBP15.09■□□□□ 0.01
PNKP-220ENST00000627232 Q8IZM0 81 aa15.09■□□□□ 0.01
PNKP-220ENST00000627232 CHCHD10Q8WYQ3 142 aaPredicted RBP15.09■□□□□ 0.01
PNKP-220ENST00000627232 PSMB2P49721 201 aa15.08■□□□□ 0.01
PNKP-220ENST00000627232 OCIAD2Q56VL3 154 aa15.08■□□□□ 0.01
PNKP-220ENST00000627232 Q8N3U1 123 aa15.08■□□□□ 0.01
PNKP-220ENST00000627232 TRBV30A0A0K0K1B3 111 aa15.07■□□□□ 0
PNKP-220ENST00000627232 A0A0U1RRA0 63 aa15.07■□□□□ 0
PNKP-220ENST00000627232 IBA57-AS1B1ANH7 110 aa15.07■□□□□ 0
PNKP-220ENST00000627232 Q1RN00 199 aa15.07■□□□□ 0
PNKP-220ENST00000627232 STAB1Q9NY15 2570 aa15.07■□□□□ 0
PNKP-220ENST00000627232 COX7A2LO14548 114 aa15.07■□□□□ 0
PNKP-220ENST00000627232 SCGB1C2P0DMR2 95 aa15.07■□□□□ 0
PNKP-220ENST00000627232 SOSTDC1Q6X4U4 206 aa15.07■□□□□ 0
PNKP-220ENST00000627232 PRO0461Q9UI25 63 aa15.07■□□□□ 0
PNKP-220ENST00000627232 H7C2G1 150 aa15.06■□□□□ 0
PNKP-220ENST00000627232 C6orf226Q5I0X4 101 aa15.06■□□□□ 0
PNKP-220ENST00000627232 C11orf45Q8TAV5 145 aa15.06■□□□□ 0
PNKP-220ENST00000627232 SPATA25Q9BR10 227 aa15.06■□□□□ 0
PNKP-220ENST00000627232 PRR34Q9NV39 138 aa15.06■□□□□ 0
PNKP-220ENST00000627232 TCL1BO95988 128 aa15.05■□□□□ -0
PNKP-220ENST00000627232 CMYA5Q8N3K9 4069 aa15.04■□□□□ -0
PNKP-220ENST00000627232 NANOS2P60321 138 aaKnown RBP15.02■□□□□ -0
PNKP-220ENST00000627232 TM2D3Q9BRN9 247 aa15.02■□□□□ -0
PNKP-220ENST00000627232 DEFB131BA0A096LNP1 70 aa15.02□□□□□ -0.01
PNKP-220ENST00000627232 K7EIL1 84 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms